Wall clock time and date at job start Tue Mar 31 2020 16:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31883 * 118.94998 * 2 1 4 4 C 1.32134 * 120.96137 * 180.02562 * 3 2 1 5 5 C 1.39966 * 118.92723 * 359.97438 * 4 3 2 6 6 C 1.47833 * 120.93936 * 180.02562 * 5 4 3 7 7 O 1.21556 * 120.00000 * 133.53958 * 6 5 4 8 8 N 1.34778 * 120.00082 * 313.53656 * 6 5 4 9 9 C 1.46505 * 119.99520 * 5.19311 * 8 6 5 10 10 C 1.46490 * 120.00146 * 185.19748 * 8 6 5 11 11 C 1.53003 * 109.47709 * 84.59635 * 10 8 6 12 12 H 1.09000 * 112.95865 * 308.26027 * 11 10 8 13 13 C 1.53945 * 113.77203 * 176.57835 * 11 10 8 14 14 C 1.53950 * 86.28885 * 222.09221 * 13 11 10 15 15 N 1.47585 * 113.76507 * 80.08077 * 11 10 8 16 16 C 1.36937 * 134.49603 * 318.94626 * 15 11 10 17 17 H 1.08005 * 119.99633 * 332.50191 * 16 15 11 18 18 C 1.38808 * 119.99887 * 152.51040 * 16 15 11 19 19 N 1.31619 * 119.99873 * 169.25260 * 18 16 15 20 20 Si 1.86793 * 120.00236 * 349.24642 * 18 16 15 21 21 H 1.48507 * 109.46844 * 84.70575 * 20 18 16 22 22 H 1.48503 * 109.47575 * 204.70727 * 20 18 16 23 23 H 1.48508 * 109.47442 * 324.70815 * 20 18 16 24 24 C 1.39930 * 118.12165 * 359.97438 * 5 4 3 25 25 C 1.50701 * 120.53921 * 179.97438 * 24 5 4 26 26 C 1.52992 * 109.47014 * 233.52099 * 25 24 5 27 27 C 1.53002 * 109.46717 * 113.52099 * 25 24 5 28 28 N 1.31855 * 118.94966 * 180.25450 * 2 1 3 29 29 H 1.09002 * 109.47750 * 89.99837 * 1 2 3 30 30 H 1.08998 * 109.47170 * 210.00516 * 1 2 3 31 31 H 1.09002 * 109.47114 * 330.00138 * 1 2 3 32 32 H 1.08006 * 120.53395 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47267 * 84.36232 * 9 8 6 34 34 H 1.09008 * 109.46723 * 204.35769 * 9 8 6 35 35 H 1.08993 * 109.47191 * 324.35410 * 9 8 6 36 36 H 1.09000 * 109.47503 * 204.60114 * 10 8 6 37 37 H 1.09000 * 109.47376 * 324.59959 * 10 8 6 38 38 H 1.09000 * 113.74130 * 336.43738 * 13 11 10 39 39 H 1.08998 * 113.74051 * 107.64476 * 13 11 10 40 40 H 1.09002 * 113.76868 * 137.90703 * 14 13 11 41 41 H 1.08992 * 113.76983 * 269.19488 * 14 13 11 42 42 H 0.96999 * 120.00146 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.47046 * 353.52131 * 25 24 5 44 44 H 1.09008 * 109.47520 * 300.00054 * 26 25 24 45 45 H 1.08999 * 109.47291 * 180.02562 * 26 25 24 46 46 H 1.09000 * 109.47718 * 59.99671 * 26 25 24 47 47 H 1.08991 * 109.47239 * 299.99927 * 27 25 24 48 48 H 1.08995 * 109.47336 * 60.00210 * 27 25 24 49 49 H 1.09000 * 109.46433 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1453 1.1540 0.0000 4 6 3.4659 1.2004 -0.0005 5 6 4.1855 -0.0001 -0.0005 6 6 5.6638 -0.0001 -0.0005 7 8 6.2716 -0.7253 0.7626 8 7 6.3377 0.8039 -0.8466 9 6 5.6096 1.7592 -1.6854 10 6 7.7981 0.7223 -0.9277 11 6 8.1938 -0.3960 -1.8940 12 1 7.7078 -1.3451 -1.6679 13 6 9.7122 -0.5141 -2.1181 14 6 9.3757 -0.7197 -3.6062 15 7 8.1154 -0.0086 -3.3160 16 6 7.2292 0.7184 -4.0652 17 1 6.1912 0.7727 -3.7717 18 6 7.6650 1.3853 -5.2019 19 7 6.7896 1.9052 -6.0361 20 14 9.4936 1.5452 -5.5477 21 1 9.9740 0.3251 -6.2450 22 1 9.7332 2.7328 -6.4064 23 1 10.2277 1.7045 -4.2666 24 6 3.4660 -1.2003 0.0006 25 6 4.1856 -2.5244 0.0001 26 6 3.6743 -3.3822 -1.1590 27 6 3.9248 -3.2470 1.3232 28 7 2.1452 -1.1538 -0.0051 29 1 -0.3635 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 3.9816 2.1494 -0.0001 33 1 5.4220 2.6711 -1.1185 34 1 6.2050 1.9958 -2.5673 35 1 4.6605 1.3217 -1.9945 36 1 8.1956 1.6712 -1.2878 37 1 8.2056 0.5094 0.0606 38 1 10.2588 0.4068 -1.9149 39 1 10.1593 -1.3873 -1.6429 40 1 10.0375 -0.1815 -4.2847 41 1 9.2386 -1.7643 -3.8853 42 1 7.0941 2.3716 -6.8302 43 1 5.2561 -2.3561 -0.1171 44 1 2.6037 -3.5505 -1.0418 45 1 4.1944 -4.3401 -1.1591 46 1 3.8600 -2.8674 -2.1016 47 1 4.2890 -2.6359 2.1489 48 1 2.8543 -3.4153 1.4405 49 1 4.4449 -4.2049 1.3226 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085855105.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:40 Heat of formation + Delta-G solvation = 56.732757 kcal Electronic energy + Delta-G solvation = -30207.886280 eV Core-core repulsion = 26364.755898 eV Total energy + Delta-G solvation = -3843.130382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.61776 -40.86456 -39.64928 -37.40059 -36.37364 -34.66126 -34.40778 -33.27940 -30.98122 -30.24107 -29.20739 -28.12705 -27.61804 -26.03641 -25.24700 -24.92229 -23.79205 -21.82088 -21.07223 -20.59864 -19.18060 -18.99390 -18.14843 -17.64850 -17.18436 -16.99600 -16.60002 -16.40559 -15.98319 -15.61104 -15.36518 -14.97691 -14.93560 -14.81494 -14.41876 -14.31909 -14.27958 -13.90938 -13.51335 -13.27902 -13.21016 -13.10273 -13.04637 -12.95792 -12.79663 -12.76638 -12.62601 -12.56154 -12.35431 -12.16045 -12.04996 -11.85795 -11.59283 -11.51529 -11.30210 -10.92627 -10.69397 -10.47111 -10.40471 -9.67493 -8.90150 -8.11461 -5.46659 -0.57980 -0.12597 1.33901 1.40360 1.46059 1.50750 1.93954 2.46333 2.54036 2.75872 2.90534 2.94988 3.17121 3.21734 3.33164 3.72930 3.80335 3.99403 3.99966 4.10366 4.18424 4.21192 4.26926 4.33640 4.46624 4.51670 4.54781 4.64014 4.64902 4.69478 4.72228 4.74005 4.80135 4.85371 4.88908 4.90203 4.91491 4.99832 5.04389 5.07666 5.24279 5.24330 5.35536 5.38919 5.48399 5.63318 5.75918 6.20871 6.30211 6.59133 6.89195 6.96080 7.51113 8.37779 9.07956 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.004031 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.654130 B = 6944.650058 C = 7690.778980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.322 3.678 3 N -0.534 5.534 4 C 0.189 3.811 5 C -0.259 4.259 6 C 0.570 3.430 7 O -0.554 6.554 8 N -0.588 5.588 9 C 0.066 3.934 10 C 0.123 3.877 11 C 0.132 3.868 12 H 0.046 0.954 13 C -0.122 4.122 14 C 0.084 3.916 15 N -0.640 5.640 16 C -0.210 4.210 17 H 0.072 0.928 18 C -0.031 4.031 19 N -0.961 5.961 20 Si 0.949 3.051 21 H -0.290 1.290 22 H -0.315 1.315 23 H -0.250 1.250 24 C 0.228 3.772 25 C -0.058 4.058 26 C -0.132 4.132 27 C -0.123 4.123 28 N -0.522 5.522 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.193 0.807 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.036 0.964 41 H 0.049 0.951 42 H 0.259 0.741 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.032 0.968 47 H 0.045 0.955 48 H 0.066 0.934 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.890 -5.002 15.085 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.056 3.944 3 N -0.249 5.249 4 C 0.022 3.978 5 C -0.267 4.267 6 C 0.357 3.643 7 O -0.434 6.434 8 N -0.318 5.318 9 C -0.076 4.076 10 C 0.000 4.000 11 C 0.026 3.974 12 H 0.063 0.937 13 C -0.160 4.160 14 C -0.040 4.040 15 N -0.369 5.369 16 C -0.338 4.338 17 H 0.089 0.911 18 C -0.226 4.226 19 N -0.608 5.608 20 Si 0.780 3.220 21 H -0.218 1.218 22 H -0.244 1.244 23 H -0.175 1.175 24 C 0.081 3.919 25 C -0.077 4.077 26 C -0.190 4.190 27 C -0.180 4.180 28 N -0.237 5.237 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.209 0.791 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.051 0.949 47 H 0.064 0.936 48 H 0.085 0.915 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.749 -5.145 15.212 17.419 hybrid contribution 1.604 0.384 -1.208 2.044 sum -5.145 -4.760 14.003 15.660 Atomic orbital electron populations 1.20766 0.82565 1.05588 1.05175 1.24305 1.00118 0.82996 0.86946 1.68403 1.09475 1.30429 1.16594 1.23919 0.89675 0.98151 0.86076 1.21605 0.95933 0.97281 1.11843 1.17904 0.86204 0.79907 0.80275 1.90715 1.69832 1.41888 1.40925 1.47678 1.07927 1.37396 1.38790 1.22370 0.97132 0.91694 0.96419 1.21845 0.78242 0.99979 0.99924 1.22772 0.94827 0.95561 0.84256 0.93661 1.23447 0.94910 1.03243 0.94427 1.23044 0.88188 0.95633 0.97097 1.46538 1.26793 1.58046 1.05484 1.18654 0.89888 1.19979 1.05249 0.91080 1.25635 1.00690 0.98448 0.97790 1.69871 1.34728 1.42381 1.13822 0.85821 0.83006 0.75470 0.77726 1.21769 1.24404 1.17469 1.22019 0.89463 0.95168 0.85202 1.20392 0.99008 0.89446 0.98869 1.21724 1.02499 0.99470 0.95312 1.21617 1.02500 1.00219 0.93695 1.68181 1.08524 1.30420 1.16564 0.88202 0.88108 0.88066 0.79050 0.90031 0.88967 0.93129 0.89399 0.88579 0.88958 0.88588 0.94603 0.93324 0.93159 0.89912 0.90898 0.90065 0.94925 0.93552 0.91459 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.31 71.24 0.73 -0.63 16 2 C 0.32 8.31 7.64 138.70 1.06 9.37 16 3 N -0.53 -14.68 10.32 -186.79 -1.93 -16.61 16 4 C 0.19 5.23 9.02 85.07 0.77 6.00 16 5 C -0.26 -8.09 5.01 -19.91 -0.10 -8.19 16 6 C 0.57 19.07 6.57 86.78 0.57 19.64 16 7 O -0.55 -20.15 14.75 -3.89 -0.06 -20.21 16 8 N -0.59 -19.40 2.88 -850.21 -2.45 -21.85 16 9 C 0.07 2.16 7.82 127.77 1.00 3.16 16 10 C 0.12 3.96 5.23 86.38 0.45 4.41 16 11 C 0.13 4.73 4.51 45.09 0.20 4.94 16 12 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 13 C -0.12 -3.70 7.86 31.25 0.25 -3.46 16 14 C 0.08 3.27 7.51 86.48 0.65 3.92 16 15 N -0.64 -28.31 3.19 -694.00 -2.22 -30.52 16 16 C -0.21 -10.97 9.01 84.03 0.76 -10.21 16 17 H 0.07 3.98 5.87 -2.91 -0.02 3.97 16 18 C -0.03 -1.73 5.50 84.86 0.47 -1.26 16 19 N -0.96 -57.83 13.97 21.65 0.30 -57.53 16 20 Si 0.95 45.17 24.74 68.60 1.70 46.86 16 21 H -0.29 -13.74 7.04 99.48 0.70 -13.04 16 22 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 23 H -0.25 -10.90 6.75 99.48 0.67 -10.23 16 24 C 0.23 6.96 5.52 42.92 0.24 7.20 16 25 C -0.06 -1.63 2.83 -11.54 -0.03 -1.66 16 26 C -0.13 -3.39 9.05 71.98 0.65 -2.74 16 27 C -0.12 -2.85 9.17 71.98 0.66 -2.19 16 28 N -0.52 -14.74 9.85 -175.03 -1.72 -16.46 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.19 4.38 6.12 -2.91 -0.02 4.36 16 33 H 0.08 2.06 7.02 -2.39 -0.02 2.04 16 34 H 0.09 3.72 4.87 -2.38 -0.01 3.71 16 35 H 0.05 1.72 6.18 -2.39 -0.01 1.71 16 36 H 0.09 2.84 8.03 -2.39 -0.02 2.82 16 37 H 0.10 2.79 7.52 -2.39 -0.02 2.77 16 38 H 0.09 2.63 8.10 -2.39 -0.02 2.61 16 39 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.04 1.47 3.68 -2.39 -0.01 1.46 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 43 H 0.08 2.70 5.53 -2.39 -0.01 2.69 16 44 H 0.07 1.75 7.96 -2.38 -0.02 1.73 16 45 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -67.89 381.91 2.86 -65.03 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.92 Total: 23.00 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: 8.32 Total: 28.29 kcal Atomic # 7 Polarization: -134.95 SS G_CDS: -8.02 Total: -142.97 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.06 Total: -20.21 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.70 Total: 46.86 kcal Total: -67.89 2.86 -65.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085855105.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.760 kcal (2) G-P(sol) polarization free energy of solvation -67.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds