Wall clock time and date at job start Tue Mar 31 2020 21:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47143 * 2 1 4 4 N 1.31924 * 120.17021 * 264.07683 * 3 2 1 5 5 N 1.28283 * 122.32455 * 179.97438 * 4 3 2 6 6 C 1.31910 * 122.51594 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.01809 * 180.02562 * 6 5 4 8 8 C 1.38509 * 119.97200 * 359.72034 * 6 5 4 9 9 C 1.39724 * 120.17382 * 84.05742 * 3 2 1 10 10 C 1.48130 * 121.14489 * 0.02562 * 9 3 2 11 11 O 1.21518 * 119.99983 * 354.41482 * 10 9 3 12 12 N 1.34775 * 120.00441 * 174.41164 * 10 9 3 13 13 C 1.46493 * 120.00488 * 180.27697 * 12 10 9 14 14 C 1.52999 * 109.47238 * 179.72500 * 13 12 10 15 15 H 1.08996 * 110.43675 * 307.54210 * 14 13 12 16 16 C 1.54891 * 110.48767 * 70.22700 * 14 13 12 17 17 C 1.54890 * 102.74928 * 156.61983 * 16 14 13 18 18 C 1.54270 * 104.19685 * 322.05634 * 17 16 14 19 19 H 1.09000 * 110.07307 * 142.91625 * 18 17 16 20 20 N 1.46502 * 110.03286 * 264.32617 * 18 17 16 21 21 C 1.36931 * 119.99736 * 272.17027 * 20 18 17 22 22 H 1.08001 * 120.00276 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99735 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00227 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00002 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47024 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47098 * 120.00236 * 25 23 21 28 28 H 1.48503 * 109.47136 * 240.00113 * 25 23 21 29 29 C 1.53876 * 106.59669 * 23.61028 * 18 17 16 30 30 H 1.09006 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47106 * 300.00092 * 1 2 3 32 32 H 1.09001 * 109.47350 * 59.99846 * 1 2 3 33 33 H 1.09002 * 109.47106 * 239.99908 * 2 1 3 34 34 H 1.08998 * 109.47630 * 119.99716 * 2 1 3 35 35 H 1.08998 * 109.47383 * 89.99794 * 7 6 5 36 36 H 1.08996 * 109.47650 * 210.00249 * 7 6 5 37 37 H 1.09009 * 109.46628 * 330.00129 * 7 6 5 38 38 H 1.07999 * 121.09103 * 180.30838 * 8 6 5 39 39 H 0.97004 * 119.99828 * 0.02562 * 12 10 9 40 40 H 1.09005 * 109.47274 * 299.72558 * 13 12 10 41 41 H 1.09004 * 109.47049 * 59.72276 * 13 12 10 42 42 H 1.08997 * 110.75495 * 274.93692 * 16 14 13 43 43 H 1.08999 * 110.75366 * 38.30661 * 16 14 13 44 44 H 1.08997 * 110.48295 * 203.37962 * 17 16 14 45 45 H 1.09003 * 110.59902 * 80.79160 * 17 16 14 46 46 H 0.96995 * 119.99783 * 92.16603 * 20 18 17 47 47 H 0.96995 * 120.00380 * 179.97438 * 24 23 21 48 48 H 1.08998 * 110.03460 * 240.71485 * 29 18 17 49 49 H 1.09002 * 110.02966 * 119.28581 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3642 2.0067 -1.1344 5 7 2.7958 3.2138 -1.1825 6 6 2.9394 3.9589 -0.1035 7 6 3.4509 5.3712 -0.2252 8 6 2.6138 3.4449 1.1408 9 6 2.1485 2.1246 1.2014 10 6 1.7852 1.4990 2.4941 11 8 1.2831 0.3926 2.5137 12 7 2.0115 2.1569 3.6484 13 6 1.6578 1.5357 4.9271 14 6 2.0218 2.4828 6.0722 15 1 3.0608 2.8009 5.9873 16 6 1.0756 3.7090 6.0831 17 6 1.1590 4.1922 7.5523 18 6 1.2265 2.8893 8.3757 19 1 1.8953 3.0188 9.2266 20 7 -0.1125 2.5204 8.8419 21 6 -0.5858 3.0171 10.0269 22 1 0.0281 3.6805 10.6181 23 6 -1.8543 2.6671 10.4689 24 7 -2.6023 1.8582 9.7488 25 14 -2.4998 3.3441 12.0858 26 1 -1.4727 4.2236 12.6995 27 1 -3.7370 4.1265 11.8362 28 1 -2.8027 2.2198 13.0075 29 6 1.7751 1.8025 7.4347 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.6104 6.0517 -0.3610 36 1 3.9936 5.6405 0.6809 37 1 4.1189 5.4429 -1.0836 38 1 2.7197 4.0405 2.0354 39 1 2.4120 3.0402 3.6327 40 1 0.5868 1.3337 4.9490 41 1 2.2062 0.6005 5.0407 42 1 1.4350 4.4803 5.4018 43 1 0.0572 3.4133 5.8309 44 1 0.2701 4.7648 7.8166 45 1 2.0572 4.7896 7.7092 46 1 -0.6636 1.9243 8.3111 47 1 -3.4885 1.6133 10.0577 48 1 1.0451 1.0005 7.3248 49 1 2.7105 1.4051 7.8285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086737161.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:12 Heat of formation + Delta-G solvation = 13.807230 kcal Electronic energy + Delta-G solvation = -28151.608906 eV Core-core repulsion = 24306.617133 eV Total energy + Delta-G solvation = -3844.991773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 24.99 seconds Orbital eigenvalues (eV) -41.78065 -39.82837 -38.25805 -35.77725 -34.83643 -34.12182 -33.35757 -31.95198 -30.65733 -29.09567 -28.37263 -27.43280 -25.76948 -24.96077 -23.81351 -23.21458 -22.14144 -21.10311 -20.01310 -19.26817 -18.14648 -17.92615 -17.14820 -16.37011 -16.16069 -15.91029 -15.43006 -15.22488 -14.84648 -14.65689 -14.37286 -14.15673 -13.87502 -13.63281 -13.50541 -13.38713 -13.27991 -12.83565 -12.72161 -12.58371 -12.33285 -12.01822 -11.48864 -11.31559 -11.26710 -11.11377 -10.87221 -10.79935 -10.67955 -10.62794 -10.62423 -10.56899 -10.34662 -10.24178 -9.98639 -9.89767 -9.72679 -9.66030 -9.27663 -8.92399 -6.97455 -5.79652 -3.08178 -0.07774 0.43238 2.42897 2.69556 3.18467 3.40471 3.46242 3.48509 3.50206 3.82378 3.93381 4.16233 4.31172 4.55729 4.62004 4.75866 4.80908 4.84516 4.96552 4.99133 5.06247 5.18835 5.21094 5.26259 5.45075 5.48903 5.52507 5.55808 5.62997 5.63943 5.76619 5.80044 5.82802 5.90120 5.95538 6.01444 6.06818 6.09639 6.15188 6.25053 6.26258 6.38954 6.58821 6.66599 6.84734 7.03249 7.11161 7.68481 7.80156 8.28897 8.39503 9.50318 10.09293 10.43042 11.42947 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.017992 B = 0.002234 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.913993 B =12532.624064 C =13302.098468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 C 0.121 3.879 4 N -0.239 5.239 5 N -0.225 5.225 6 C 0.058 3.942 7 C -0.101 4.101 8 C -0.083 4.083 9 C -0.125 4.125 10 C 0.557 3.443 11 O -0.511 6.511 12 N -0.715 5.715 13 C 0.126 3.874 14 C -0.104 4.104 15 H 0.075 0.925 16 C -0.113 4.113 17 C -0.146 4.146 18 C 0.174 3.826 19 H 0.049 0.951 20 N -0.721 5.721 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.121 4.121 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.154 0.846 39 H 0.398 0.602 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.048 0.952 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.073 0.927 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.092 3.761 -19.519 24.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 C -0.024 4.024 4 N -0.080 5.080 5 N -0.069 5.069 6 C -0.087 4.087 7 C -0.159 4.159 8 C -0.113 4.113 9 C -0.140 4.140 10 C 0.342 3.658 11 O -0.387 6.387 12 N -0.366 5.366 13 C 0.003 3.997 14 C -0.123 4.123 15 H 0.093 0.907 16 C -0.151 4.151 17 C -0.187 4.187 18 C 0.064 3.936 19 H 0.067 0.933 20 N -0.362 5.362 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.160 4.160 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.172 0.828 39 H 0.233 0.767 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.092 0.908 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.828 2.897 -20.936 25.257 hybrid contribution -0.550 0.906 2.300 2.532 sum 13.278 3.803 -18.636 23.196 Atomic orbital electron populations 1.21597 0.93210 1.02669 1.01800 1.20725 0.97421 0.88537 1.04826 1.23179 0.91967 0.98761 0.88481 1.73083 1.08012 1.03077 1.23866 1.72841 1.07469 0.99560 1.26996 1.22874 0.96795 0.99002 0.90005 1.20711 1.02081 0.88845 1.04288 1.22550 0.94538 0.94403 0.99812 1.21159 1.01613 0.95229 0.95972 1.17855 0.79398 0.85519 0.83069 1.90780 1.42364 1.18834 1.86720 1.45958 1.63445 1.21046 1.06143 1.21648 1.01609 0.96150 0.80279 1.22257 0.99680 0.95990 0.94393 0.90668 1.22510 0.99219 0.95659 0.97691 1.23125 1.00967 0.99962 0.94644 1.20796 0.88371 0.90743 0.93699 0.93336 1.42548 1.12843 1.56863 1.23925 1.19292 0.98058 1.22614 0.97067 0.91175 1.24745 0.97150 1.00238 0.98867 1.69666 1.10725 1.38927 1.38724 0.86149 0.78632 0.78089 0.83509 1.20591 1.21915 1.21889 1.22470 1.01105 0.99303 0.93113 0.91491 0.91912 0.93198 0.90174 0.87202 0.89554 0.89985 0.89671 0.82844 0.76667 0.90419 0.91093 0.93095 0.91213 0.90918 0.93302 0.78267 0.93552 0.90807 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 9.51 37.15 0.35 -1.05 16 2 C -0.08 -0.80 5.48 -27.89 -0.15 -0.96 16 3 C 0.12 1.38 6.16 -82.00 -0.51 0.87 16 4 N -0.24 -2.98 11.42 33.81 0.39 -2.59 16 5 N -0.23 -2.59 11.41 33.57 0.38 -2.21 16 6 C 0.06 0.49 6.86 -82.46 -0.57 -0.08 16 7 C -0.10 -0.48 10.19 36.01 0.37 -0.11 16 8 C -0.08 -0.64 9.34 -38.78 -0.36 -1.00 16 9 C -0.13 -1.27 5.92 -104.58 -0.62 -1.89 16 10 C 0.56 6.20 7.74 -12.20 -0.09 6.10 16 11 O -0.51 -7.02 12.04 5.35 0.06 -6.96 16 12 N -0.71 -6.68 5.41 -61.16 -0.33 -7.01 16 13 C 0.13 1.41 4.96 -4.05 -0.02 1.39 16 14 C -0.10 -1.18 2.89 -88.96 -0.26 -1.44 16 15 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 16 C -0.11 -1.46 6.19 -24.74 -0.15 -1.61 16 17 C -0.15 -2.33 6.54 -25.07 -0.16 -2.50 16 18 C 0.17 3.19 3.55 -66.81 -0.24 2.96 16 19 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 20 N -0.72 -17.21 5.08 -52.34 -0.27 -17.48 16 21 C -0.24 -6.44 9.96 -15.06 -0.15 -6.59 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 25 Si 0.90 22.05 29.55 -169.99 -5.02 17.03 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 C -0.12 -1.77 6.14 -25.61 -0.16 -1.92 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.75 6.92 -51.93 -0.36 0.39 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.11 1.24 5.89 -51.93 -0.31 0.93 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.22 8.09 -51.93 -0.42 -0.20 16 37 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.15 0.64 6.65 -52.49 -0.35 0.29 16 39 H 0.40 2.66 6.66 -40.82 -0.27 2.39 16 40 H 0.08 1.03 8.02 -51.93 -0.42 0.62 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 1.04 7.97 -51.93 -0.41 0.63 16 44 H 0.07 1.37 8.04 -51.93 -0.42 0.95 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.38 9.81 7.52 -40.82 -0.31 9.50 16 47 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.07 1.19 7.31 -51.93 -0.38 0.82 16 49 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 394.93 15.07 5.95 5.95 Total: -1.00 -32.39 394.93 -8.76 -41.15 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -7.83 Total: 7.46 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -2.81 Total: -8.33 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.90 Total: -56.30 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: 0.06 Total: -6.96 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.39 -8.76 -41.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086737161.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.956 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.99 seconds