Wall clock time and date at job start Tue Mar 31 2020 22:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47199 * 2 1 4 4 N 1.32149 * 120.54224 * 89.99594 * 3 2 1 5 5 C 1.31868 * 120.96684 * 180.02562 * 4 3 2 6 6 N 1.31871 * 122.09752 * 359.97438 * 5 4 3 7 7 C 1.32140 * 120.96537 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.53559 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47268 * 269.98083 * 8 7 6 10 10 C 1.39947 * 118.92708 * 359.97438 * 7 6 5 11 11 C 1.47837 * 120.94032 * 179.97438 * 10 7 6 12 12 O 1.21554 * 119.99728 * 270.02660 * 11 10 7 13 13 N 1.34774 * 120.00073 * 90.02085 * 11 10 7 14 14 C 1.46497 * 120.00127 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.64352 * 325.70669 * 14 13 11 16 16 C 1.55158 * 110.71720 * 88.84343 * 14 13 11 17 17 C 1.55129 * 101.48348 * 153.73454 * 16 14 13 18 18 N 1.47429 * 104.94175 * 323.22514 * 17 16 14 19 19 C 1.36937 * 125.64683 * 203.96741 * 18 17 16 20 20 H 1.07996 * 119.99998 * 169.88711 * 19 18 17 21 21 C 1.38809 * 119.99686 * 349.89079 * 19 18 17 22 22 N 1.31620 * 120.00622 * 350.46867 * 21 19 18 23 23 Si 1.86800 * 119.99760 * 170.46718 * 21 19 18 24 24 H 1.48502 * 109.47410 * 94.13588 * 23 21 19 25 25 H 1.48500 * 109.47421 * 214.13677 * 23 21 19 26 26 H 1.48496 * 109.47359 * 334.13428 * 23 21 19 27 27 C 1.47020 * 108.70316 * 24.00260 * 18 17 16 28 28 H 1.08999 * 109.88158 * 239.52140 * 27 18 17 29 29 C 1.52999 * 109.88247 * 118.35811 * 27 18 17 30 30 H 1.09006 * 109.47309 * 300.00300 * 1 2 3 31 31 H 1.08998 * 109.46719 * 59.99912 * 1 2 3 32 32 H 1.08998 * 109.47510 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47036 * 239.99235 * 2 1 3 34 34 H 1.09001 * 109.46679 * 119.99573 * 2 1 3 35 35 H 1.08002 * 118.94726 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47195 * 29.98067 * 8 7 6 37 37 H 1.09003 * 109.46931 * 149.97856 * 8 7 6 38 38 H 1.08990 * 109.47081 * 60.00238 * 9 8 7 39 39 H 1.09002 * 109.46810 * 180.02562 * 9 8 7 40 40 H 1.08997 * 109.46917 * 299.99194 * 9 8 7 41 41 H 0.97003 * 119.99973 * 0.02562 * 13 11 10 42 42 H 1.08999 * 111.00946 * 271.94058 * 16 14 13 43 43 H 1.08998 * 111.00443 * 35.79339 * 16 14 13 44 44 H 1.09000 * 110.41780 * 204.29461 * 17 16 14 45 45 H 1.08997 * 110.20687 * 82.04470 * 17 16 14 46 46 H 0.96995 * 120.00190 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.47221 * 302.19094 * 29 27 18 48 48 H 1.09008 * 109.47060 * 62.19021 * 29 27 18 49 49 H 1.08994 * 109.47207 * 182.19052 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2562 2.0539 1.1381 5 6 2.6953 3.2973 1.1479 6 7 2.9316 3.9657 0.0360 7 6 2.7351 3.4096 -1.1464 8 6 3.0089 4.1822 -2.4110 9 6 1.7417 4.9247 -2.8396 10 6 2.2695 2.0911 -1.2054 11 6 2.0337 1.4257 -2.5043 12 8 0.9443 1.5030 -3.0378 13 7 3.0267 0.7334 -3.0969 14 6 2.7929 0.0735 -4.3837 15 1 1.7690 -0.2950 -4.4462 16 6 3.1018 1.0379 -5.5593 17 6 3.4662 0.0400 -6.6898 18 7 4.1964 -1.0486 -6.0151 19 6 5.0939 -1.8954 -6.6089 20 1 5.6981 -2.5536 -6.0023 21 6 5.2272 -1.9075 -7.9905 22 7 4.3687 -1.2495 -8.7404 23 14 6.6251 -2.8578 -8.7856 24 1 6.1527 -4.2162 -9.1558 25 1 7.0794 -2.1424 -10.0051 26 1 7.7546 -2.9704 -7.8283 27 6 3.8006 -1.0752 -4.5994 28 1 4.6755 -0.9244 -3.9670 29 6 3.1407 -2.4153 -4.2686 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 2.8667 3.7837 2.0968 36 1 3.8082 4.9013 -2.2316 37 1 3.3106 3.4930 -3.1998 38 1 1.4401 5.6139 -2.0510 39 1 1.9397 5.4831 -3.7545 40 1 0.9425 4.2056 -3.0192 41 1 3.8960 0.6714 -2.6709 42 1 2.2234 1.6271 -5.8225 43 1 3.9471 1.6840 -5.3227 44 1 4.1035 0.5217 -7.4313 45 1 2.5606 -0.3444 -7.1590 46 1 4.4616 -1.2583 -9.7059 47 1 2.2789 -2.5662 -4.9187 48 1 3.8580 -3.2215 -4.4231 49 1 2.8152 -2.4131 -3.2284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088864357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:03 Heat of formation + Delta-G solvation = 19.625616 kcal Electronic energy + Delta-G solvation = -29702.530431 eV Core-core repulsion = 25857.790963 eV Total energy + Delta-G solvation = -3844.739468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.64933 -39.55644 -37.61003 -35.96216 -34.46767 -34.07887 -32.10333 -31.78949 -30.80744 -30.41649 -28.66171 -25.96281 -25.57809 -24.44688 -24.04621 -23.31351 -21.07012 -21.03733 -20.28782 -19.85480 -18.26236 -17.58536 -16.85524 -16.73868 -16.15775 -15.26434 -14.78612 -14.74295 -14.47782 -14.30551 -14.11511 -13.97974 -13.94257 -13.83824 -13.46007 -13.01434 -12.85854 -12.54712 -12.18328 -12.12590 -11.94544 -11.85569 -11.79410 -11.62738 -11.28228 -11.22489 -11.17215 -10.98199 -10.82257 -10.66160 -10.59927 -10.50349 -10.12129 -9.97577 -9.85667 -9.68646 -9.63470 -9.52631 -8.81667 -8.62809 -6.89512 -5.79829 -3.13618 0.42074 0.73200 2.46063 3.09372 3.35980 3.38353 3.42403 3.43837 3.68854 3.70039 3.96312 4.42896 4.53519 4.64599 4.82151 4.89364 5.01498 5.02657 5.07140 5.20351 5.25801 5.34499 5.37652 5.43317 5.50867 5.52067 5.66898 5.71511 5.72633 5.74484 5.82603 5.96305 6.04933 6.05616 6.09563 6.13927 6.23018 6.26703 6.41135 6.52533 6.60245 6.67294 6.81379 7.02913 7.43633 7.48768 7.55401 7.73032 7.76657 8.14403 8.20321 9.12875 9.74810 10.40844 11.32761 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.003131 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.267053 B = 8941.502660 C = 9601.473341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C 0.217 3.783 4 N -0.522 5.522 5 C 0.309 3.691 6 N -0.522 5.522 7 C 0.218 3.782 8 C -0.084 4.084 9 C -0.145 4.145 10 C -0.228 4.228 11 C 0.574 3.426 12 O -0.522 6.522 13 N -0.706 5.706 14 C 0.135 3.865 15 H 0.096 0.904 16 C -0.155 4.155 17 C 0.175 3.825 18 N -0.593 5.593 19 C -0.229 4.229 20 H 0.076 0.924 21 C -0.004 4.004 22 N -0.916 5.916 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.155 3.845 28 H 0.035 0.965 29 C -0.155 4.155 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.200 0.800 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.399 0.601 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.029 0.971 46 H 0.253 0.747 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 8.378 17.709 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C 0.070 3.930 4 N -0.236 5.236 5 C 0.022 3.978 6 N -0.236 5.236 7 C 0.071 3.929 8 C -0.122 4.122 9 C -0.203 4.203 10 C -0.236 4.236 11 C 0.357 3.643 12 O -0.398 6.398 13 N -0.356 5.356 14 C 0.031 3.969 15 H 0.114 0.886 16 C -0.195 4.195 17 C 0.049 3.951 18 N -0.319 5.319 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.201 4.201 22 N -0.562 5.562 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.047 3.953 28 H 0.053 0.947 29 C -0.214 4.214 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.216 0.784 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.233 0.767 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.047 0.953 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.975 8.823 17.955 20.615 hybrid contribution 1.036 -0.919 -0.886 1.644 sum -3.939 7.903 17.069 19.218 Atomic orbital electron populations 1.21708 0.92851 1.02916 1.02866 1.20671 0.97669 0.89228 1.04505 1.21850 0.88065 0.96414 0.86665 1.68286 1.14898 1.10930 1.29532 1.25112 0.88782 0.86948 0.97003 1.68291 1.18605 1.38286 0.98425 1.21867 0.87233 0.89298 0.94463 1.20687 1.00453 0.99539 0.91478 1.21700 0.96518 1.00448 1.01620 1.21557 1.07996 0.97713 0.96295 1.17667 0.84715 0.78599 0.83348 1.90815 1.24015 1.60412 1.64522 1.46147 1.14244 1.52246 1.22995 1.22225 1.00477 0.93319 0.80873 0.88573 1.23446 1.00483 0.98385 0.97152 1.21443 0.95813 0.86296 0.91506 1.44477 1.48820 1.35646 1.02913 1.18946 1.11660 1.15553 0.89534 0.90620 1.24818 0.98916 1.00346 0.96056 1.69948 1.35951 1.46150 1.04163 0.86151 0.81741 0.79179 0.78943 1.21607 1.21612 1.20618 1.21011 0.93437 0.91838 0.88986 0.94711 1.22237 1.01171 0.99344 0.98673 0.92258 0.91566 0.91236 0.89463 0.88892 0.78373 0.88894 0.89355 0.92304 0.91172 0.91582 0.76681 0.91650 0.91978 0.90971 0.95267 0.93626 0.92796 0.92588 0.94484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.90 37.16 0.37 -1.09 16 2 C -0.08 -0.85 5.91 -27.88 -0.16 -1.02 16 3 C 0.22 2.57 6.12 -81.82 -0.50 2.06 16 4 N -0.52 -5.95 10.36 -10.48 -0.11 -6.06 16 5 C 0.31 3.15 12.27 -92.03 -1.13 2.02 16 6 N -0.52 -6.03 10.36 -10.48 -0.11 -6.13 16 7 C 0.22 2.63 6.12 -81.82 -0.50 2.13 16 8 C -0.08 -0.90 5.91 -27.88 -0.16 -1.07 16 9 C -0.14 -1.53 9.90 37.16 0.37 -1.16 16 10 C -0.23 -2.88 5.66 -104.69 -0.59 -3.47 16 11 C 0.57 8.06 4.51 -12.33 -0.06 8.00 16 12 O -0.52 -8.93 16.64 5.32 0.09 -8.84 16 13 N -0.71 -9.59 5.19 -52.98 -0.27 -9.86 16 14 C 0.14 2.26 2.79 -66.10 -0.18 2.07 16 15 H 0.10 1.73 7.33 -51.93 -0.38 1.35 16 16 C -0.16 -2.81 6.79 -24.46 -0.17 -2.98 16 17 C 0.17 4.03 5.42 -2.41 -0.01 4.02 16 18 N -0.59 -14.11 3.13 -162.44 -0.51 -14.62 16 19 C -0.23 -6.04 9.85 -15.06 -0.15 -6.18 16 20 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 21 C 0.00 -0.12 5.40 -17.43 -0.09 -0.21 16 22 N -0.92 -26.01 10.69 55.49 0.59 -25.42 16 23 Si 0.91 21.40 29.56 -169.99 -5.03 16.38 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C 0.16 2.93 3.48 -66.96 -0.23 2.69 16 28 H 0.04 0.64 7.70 -51.93 -0.40 0.24 16 29 C -0.15 -2.74 9.13 37.16 0.34 -2.40 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.93 7.18 -51.93 -0.37 0.55 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.20 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.01 7.18 -51.93 -0.37 0.63 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 41 H 0.40 4.73 8.32 -40.82 -0.34 4.39 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.86 6.94 -51.93 -0.36 1.50 16 45 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 1.04 8.04 -51.92 -0.42 0.62 16 49 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 398.95 15.07 6.01 6.01 Total: -1.00 -30.69 398.95 -10.30 -40.99 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -8.10 Total: 4.15 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -2.87 Total: 3.41 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.41 Total: -62.10 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.69 -10.30 -40.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088864357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.617 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds