Wall clock time and date at job start Tue Mar 31 2020 22:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47199 * 2 1 4 4 N 1.32149 * 120.54224 * 89.99594 * 3 2 1 5 5 C 1.31868 * 120.96684 * 180.02562 * 4 3 2 6 6 N 1.31871 * 122.09752 * 359.97438 * 5 4 3 7 7 C 1.32140 * 120.96537 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.53559 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47268 * 269.98083 * 8 7 6 10 10 C 1.39947 * 118.92708 * 359.97438 * 7 6 5 11 11 C 1.47837 * 120.94032 * 179.97438 * 10 7 6 12 12 O 1.21554 * 119.99728 * 270.02660 * 11 10 7 13 13 N 1.34774 * 120.00073 * 90.02085 * 11 10 7 14 14 C 1.46497 * 120.00127 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.64352 * 325.70669 * 14 13 11 16 16 C 1.55158 * 110.71720 * 88.84343 * 14 13 11 17 17 C 1.55129 * 101.48348 * 153.73454 * 16 14 13 18 18 N 1.47429 * 104.94175 * 323.22514 * 17 16 14 19 19 C 1.36937 * 125.64683 * 203.96741 * 18 17 16 20 20 H 1.07996 * 119.99998 * 169.88711 * 19 18 17 21 21 C 1.38809 * 119.99686 * 349.89079 * 19 18 17 22 22 N 1.31620 * 120.00622 * 350.46867 * 21 19 18 23 23 Si 1.86800 * 119.99760 * 170.46718 * 21 19 18 24 24 H 1.48502 * 109.47410 * 94.13588 * 23 21 19 25 25 H 1.48500 * 109.47421 * 214.13677 * 23 21 19 26 26 H 1.48496 * 109.47359 * 334.13428 * 23 21 19 27 27 C 1.47020 * 108.70316 * 24.00260 * 18 17 16 28 28 H 1.08999 * 109.88158 * 239.52140 * 27 18 17 29 29 C 1.52999 * 109.88247 * 118.35811 * 27 18 17 30 30 H 1.09006 * 109.47309 * 300.00300 * 1 2 3 31 31 H 1.08998 * 109.46719 * 59.99912 * 1 2 3 32 32 H 1.08998 * 109.47510 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47036 * 239.99235 * 2 1 3 34 34 H 1.09001 * 109.46679 * 119.99573 * 2 1 3 35 35 H 1.08002 * 118.94726 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47195 * 29.98067 * 8 7 6 37 37 H 1.09003 * 109.46931 * 149.97856 * 8 7 6 38 38 H 1.08990 * 109.47081 * 60.00238 * 9 8 7 39 39 H 1.09002 * 109.46810 * 180.02562 * 9 8 7 40 40 H 1.08997 * 109.46917 * 299.99194 * 9 8 7 41 41 H 0.97003 * 119.99973 * 0.02562 * 13 11 10 42 42 H 1.08999 * 111.00946 * 271.94058 * 16 14 13 43 43 H 1.08998 * 111.00443 * 35.79339 * 16 14 13 44 44 H 1.09000 * 110.41780 * 204.29461 * 17 16 14 45 45 H 1.08997 * 110.20687 * 82.04470 * 17 16 14 46 46 H 0.96995 * 120.00190 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.47221 * 302.19094 * 29 27 18 48 48 H 1.09008 * 109.47060 * 62.19021 * 29 27 18 49 49 H 1.08994 * 109.47207 * 182.19052 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2562 2.0539 1.1381 5 6 2.6953 3.2973 1.1479 6 7 2.9316 3.9657 0.0360 7 6 2.7351 3.4096 -1.1464 8 6 3.0089 4.1822 -2.4110 9 6 1.7417 4.9247 -2.8396 10 6 2.2695 2.0911 -1.2054 11 6 2.0337 1.4257 -2.5043 12 8 0.9443 1.5030 -3.0378 13 7 3.0267 0.7334 -3.0969 14 6 2.7929 0.0735 -4.3837 15 1 1.7690 -0.2950 -4.4462 16 6 3.1018 1.0379 -5.5593 17 6 3.4662 0.0400 -6.6898 18 7 4.1964 -1.0486 -6.0151 19 6 5.0939 -1.8954 -6.6089 20 1 5.6981 -2.5536 -6.0023 21 6 5.2272 -1.9075 -7.9905 22 7 4.3687 -1.2495 -8.7404 23 14 6.6251 -2.8578 -8.7856 24 1 6.1527 -4.2162 -9.1558 25 1 7.0794 -2.1424 -10.0051 26 1 7.7546 -2.9704 -7.8283 27 6 3.8006 -1.0752 -4.5994 28 1 4.6755 -0.9244 -3.9670 29 6 3.1407 -2.4153 -4.2686 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 2.8667 3.7837 2.0968 36 1 3.8082 4.9013 -2.2316 37 1 3.3106 3.4930 -3.1998 38 1 1.4401 5.6139 -2.0510 39 1 1.9397 5.4831 -3.7545 40 1 0.9425 4.2056 -3.0192 41 1 3.8960 0.6714 -2.6709 42 1 2.2234 1.6271 -5.8225 43 1 3.9471 1.6840 -5.3227 44 1 4.1035 0.5217 -7.4313 45 1 2.5606 -0.3444 -7.1590 46 1 4.4616 -1.2583 -9.7059 47 1 2.2789 -2.5662 -4.9187 48 1 3.8580 -3.2215 -4.4231 49 1 2.8152 -2.4131 -3.2284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088864357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:46 Heat of formation + Delta-G solvation = 1.703153 kcal Electronic energy + Delta-G solvation = -29703.307608 eV Core-core repulsion = 25857.790963 eV Total energy + Delta-G solvation = -3845.516645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 14.85 seconds Orbital eigenvalues (eV) -42.55927 -40.79316 -39.13333 -36.80623 -35.64318 -35.31150 -33.82456 -32.62608 -32.08196 -31.74039 -30.35989 -27.15455 -26.42202 -25.99289 -25.64569 -24.17150 -22.43711 -21.88435 -21.69694 -21.46390 -19.15271 -18.82701 -18.61545 -17.59722 -17.50777 -16.67392 -16.15824 -15.82680 -15.69048 -15.67529 -15.28073 -15.20373 -14.96417 -14.74385 -14.67579 -14.34168 -13.98324 -13.85213 -13.79879 -13.35307 -13.19612 -12.90646 -12.88465 -12.80720 -12.66267 -12.60519 -12.57687 -12.28802 -12.11018 -12.08115 -12.05765 -11.94032 -11.61099 -11.52662 -11.44827 -11.08285 -10.66591 -10.59827 -10.40016 -10.10667 -8.85476 -7.84592 -5.19328 -0.45293 -0.15158 1.33686 1.48872 1.49439 1.58654 1.93358 2.51289 2.52989 2.84714 2.92668 3.12383 3.35563 3.43589 3.67766 3.75451 3.83421 3.92564 3.99401 4.10694 4.17934 4.21320 4.22507 4.25566 4.40120 4.51457 4.57495 4.62793 4.63479 4.70122 4.82816 4.90210 4.91222 4.92522 4.94913 5.00391 5.04863 5.10533 5.15246 5.22637 5.29001 5.36304 5.50413 5.56454 5.60835 5.73296 5.80443 6.22681 6.37386 6.92159 7.02903 7.10218 7.78595 8.44115 9.27230 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.003131 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.267053 B = 8941.502660 C = 9601.473341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C 0.216 3.784 4 N -0.529 5.529 5 C 0.312 3.688 6 N -0.530 5.530 7 C 0.215 3.785 8 C -0.084 4.084 9 C -0.140 4.140 10 C -0.244 4.244 11 C 0.585 3.415 12 O -0.553 6.553 13 N -0.694 5.694 14 C 0.155 3.845 15 H 0.086 0.914 16 C -0.139 4.139 17 C 0.182 3.818 18 N -0.612 5.612 19 C -0.231 4.231 20 H 0.083 0.917 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.972 3.028 24 H -0.290 1.290 25 H -0.297 1.297 26 H -0.267 1.267 27 C 0.151 3.849 28 H 0.053 0.947 29 C -0.147 4.147 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.236 0.764 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.411 0.589 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.039 0.961 45 H -0.004 1.004 46 H 0.246 0.754 47 H 0.034 0.966 48 H 0.045 0.955 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 8.689 20.534 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C 0.069 3.931 4 N -0.243 5.243 5 C 0.025 3.975 6 N -0.244 5.244 7 C 0.069 3.931 8 C -0.122 4.122 9 C -0.198 4.198 10 C -0.251 4.251 11 C 0.370 3.630 12 O -0.431 6.431 13 N -0.345 5.345 14 C 0.050 3.950 15 H 0.104 0.896 16 C -0.178 4.178 17 C 0.056 3.944 18 N -0.337 5.337 19 C -0.360 4.360 20 H 0.101 0.899 21 C -0.256 4.256 22 N -0.597 5.597 23 Si 0.801 3.199 24 H -0.217 1.217 25 H -0.223 1.223 26 H -0.192 1.192 27 C 0.044 3.956 28 H 0.071 0.929 29 C -0.206 4.206 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.252 0.748 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.248 0.752 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.057 0.943 45 H 0.014 0.986 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.064 0.936 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.060 9.133 20.844 23.116 hybrid contribution 0.725 -0.978 -1.651 2.052 sum -3.335 8.155 19.193 21.118 Atomic orbital electron populations 1.21663 0.92800 1.03624 1.01774 1.20737 0.97603 0.88584 1.05162 1.22095 0.87452 0.97028 0.86539 1.68387 1.15386 1.11501 1.29059 1.25894 0.87015 0.86584 0.97970 1.68380 1.19144 1.38404 0.98515 1.22052 0.86810 0.89117 0.95170 1.20727 1.00915 0.99657 0.90873 1.21652 0.95687 0.99982 1.02465 1.21404 1.09970 0.98209 0.95563 1.17784 0.83919 0.77789 0.83521 1.90808 1.25363 1.61422 1.65495 1.45895 1.14934 1.51887 1.21772 1.21777 0.99247 0.92236 0.81789 0.89627 1.23247 1.01154 0.97582 0.95832 1.21161 0.93606 0.87128 0.92499 1.44710 1.48639 1.35483 1.04913 1.19309 1.11712 1.15150 0.89862 0.89947 1.25591 1.01259 1.01946 0.96811 1.70146 1.37714 1.48057 1.03775 0.85163 0.79411 0.77526 0.77802 1.21706 1.22348 1.19184 1.21207 0.94583 0.93247 0.86514 0.92948 1.22127 0.99971 0.98018 1.00480 0.91902 0.93996 0.89680 0.89801 0.87159 0.74817 0.87349 0.90069 0.91792 0.89870 0.93897 0.75210 0.91024 0.90649 0.94304 0.98623 0.94427 0.94692 0.93583 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.90 71.98 0.71 -1.90 16 2 C -0.08 -1.53 5.91 29.85 0.18 -1.35 16 3 C 0.22 4.66 6.12 42.92 0.26 4.93 16 4 N -0.53 -10.68 10.36 -187.06 -1.94 -12.61 16 5 C 0.31 5.45 12.27 180.84 2.22 7.67 16 6 N -0.53 -10.95 10.36 -187.06 -1.94 -12.89 16 7 C 0.22 4.80 6.12 42.93 0.26 5.06 16 8 C -0.08 -1.68 5.91 29.85 0.18 -1.50 16 9 C -0.14 -2.79 9.90 71.98 0.71 -2.08 16 10 C -0.24 -5.78 5.66 -19.91 -0.11 -5.89 16 11 C 0.59 15.77 4.51 86.78 0.39 16.16 16 12 O -0.55 -18.75 16.64 -3.89 -0.06 -18.81 16 13 N -0.69 -17.66 5.19 -439.80 -2.28 -19.95 16 14 C 0.15 5.03 2.79 46.18 0.13 5.16 16 15 H 0.09 3.04 7.33 -2.39 -0.02 3.03 16 16 C -0.14 -5.01 6.79 32.06 0.22 -4.79 16 17 C 0.18 8.68 5.42 86.93 0.47 9.15 16 18 N -0.61 -29.35 3.13 -667.84 -2.09 -31.44 16 19 C -0.23 -12.26 9.85 84.03 0.83 -11.43 16 20 H 0.08 4.16 7.85 -2.91 -0.02 4.14 16 21 C -0.06 -3.45 5.40 84.86 0.46 -2.99 16 22 N -0.95 -55.84 10.69 21.65 0.23 -55.61 16 23 Si 0.97 44.52 29.56 68.60 2.03 46.55 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 25 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 C 0.15 5.53 3.48 45.34 0.16 5.68 16 28 H 0.05 1.78 7.70 -2.39 -0.02 1.76 16 29 C -0.15 -5.01 9.13 71.98 0.66 -4.35 16 30 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.04 0.98 8.07 -2.39 -0.02 0.96 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.59 7.18 -2.39 -0.02 1.58 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.24 2.12 8.06 -2.91 -0.02 2.09 16 36 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.73 7.18 -2.39 -0.02 1.71 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.04 1.05 8.07 -2.39 -0.02 1.03 16 41 H 0.41 8.72 8.32 -92.71 -0.77 7.95 16 42 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.04 2.09 6.94 -2.39 -0.02 2.07 16 45 H 0.00 -0.23 8.07 -2.39 -0.02 -0.25 16 46 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 47 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.05 1.65 8.04 -2.38 -0.02 1.63 16 49 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -67.74 398.95 1.84 -65.90 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.17 Total: 21.35 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 7.72 Total: 17.52 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -8.02 Total: -132.50 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.06 Total: -18.81 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -67.74 1.84 -65.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088864357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.601 kcal (2) G-P(sol) polarization free energy of solvation -67.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.85 seconds