Wall clock time and date at job start Tue Mar 31 2020 20:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30506 * 125.64608 * 2 1 4 4 C 1.34126 * 109.25016 * 180.02562 * 3 2 1 5 5 C 1.34668 * 108.02271 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.58835 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47038 * 95.02494 * 6 5 4 8 8 C 1.48646 * 111.00084 * 290.12577 * 7 6 5 9 9 C 1.54642 * 104.63364 * 201.49077 * 8 7 6 10 10 C 1.53250 * 104.67647 * 23.68066 * 9 8 7 11 11 C 1.53615 * 111.05504 * 239.01799 * 10 9 8 12 12 C 1.54706 * 101.50972 * 262.68393 * 11 10 9 13 13 N 1.46881 * 105.51455 * 335.46933 * 12 11 10 14 14 C 1.46507 * 124.37154 * 196.78826 * 13 12 11 15 15 C 1.53004 * 109.46773 * 90.00435 * 14 13 12 16 16 C 1.50695 * 109.46637 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00546 * 0.27598 * 16 15 14 18 18 C 1.37885 * 119.99721 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00035 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99853 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46986 * 90.00256 * 20 18 16 22 22 H 1.48496 * 109.47029 * 210.00273 * 20 18 16 23 23 H 1.48499 * 109.47352 * 330.00102 * 20 18 16 24 24 C 1.34756 * 111.25708 * 17.06105 * 13 12 11 25 25 O 1.21278 * 125.13512 * 178.73690 * 24 13 12 26 26 C 1.48798 * 110.99973 * 174.50687 * 7 6 5 27 27 N 1.35038 * 125.65252 * 180.31635 * 2 1 3 28 28 H 0.97001 * 126.39268 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.46746 * 89.97242 * 1 2 3 30 30 H 1.08998 * 109.46847 * 209.97667 * 1 2 3 31 31 H 1.08997 * 109.46951 * 329.97653 * 1 2 3 32 32 H 1.08003 * 125.98875 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47629 * 335.02687 * 6 5 4 34 34 H 1.09000 * 109.46755 * 215.02093 * 6 5 4 35 35 H 1.08996 * 110.40741 * 82.70085 * 8 7 6 36 36 H 1.08995 * 110.40266 * 320.27930 * 8 7 6 37 37 H 1.09003 * 110.39286 * 264.88295 * 9 8 7 38 38 H 1.08997 * 110.49462 * 142.53496 * 9 8 7 39 39 H 1.08997 * 111.02055 * 144.62343 * 11 10 9 40 40 H 1.09003 * 111.01806 * 20.73748 * 11 10 9 41 41 H 1.08997 * 110.23438 * 216.46202 * 12 11 10 42 42 H 1.08995 * 110.31108 * 94.51899 * 12 11 10 43 43 H 1.09000 * 109.46860 * 330.00633 * 14 13 12 44 44 H 1.08997 * 109.47067 * 209.99984 * 14 13 12 45 45 H 1.08992 * 109.47421 * 60.00163 * 15 14 13 46 46 H 1.08997 * 109.46955 * 299.99616 * 15 14 13 47 47 H 0.97000 * 119.99706 * 179.97438 * 19 18 16 48 48 H 1.09001 * 110.46013 * 39.48479 * 26 7 6 49 49 H 1.09008 * 110.46009 * 276.91608 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2677 1.0605 0.0000 4 6 3.5544 0.6819 -0.0006 5 6 3.5926 -0.6642 -0.0004 6 6 4.8277 -1.5278 -0.0014 7 7 5.1607 -1.9075 1.3781 8 6 5.6486 -0.7349 2.1504 9 6 6.4534 -1.3456 3.3212 10 6 6.8732 -2.7324 2.8221 11 6 6.3345 -3.8370 3.7438 12 6 7.5610 -4.1120 4.6457 13 7 8.7286 -3.6913 3.8600 14 6 10.1092 -4.0817 4.1564 15 6 10.4419 -5.3796 3.4176 16 6 11.8619 -5.7815 3.7230 17 1 12.4651 -5.1746 4.3820 18 6 12.3889 -6.9275 3.1661 19 7 11.6527 -7.6694 2.3680 20 14 14.1493 -7.4253 3.5441 21 1 14.1699 -8.2976 4.7457 22 1 14.7143 -8.1639 2.3864 23 1 14.9632 -6.2100 3.8007 24 6 8.3665 -2.8952 2.8348 25 8 9.1307 -2.3885 2.0410 26 6 6.2968 -2.8680 1.4072 27 7 2.2942 -1.0973 -0.0061 28 1 1.9952 -2.0200 -0.0108 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 4.4099 1.3411 -0.0003 33 1 5.6589 -0.9727 -0.4361 34 1 4.6426 -2.4258 -0.5908 35 1 4.8084 -0.1532 2.5294 36 1 6.2934 -0.1128 1.5298 37 1 5.8255 -1.4349 4.2078 38 1 7.3318 -0.7380 3.5384 39 1 6.0624 -4.7246 3.1726 40 1 5.4896 -3.4782 4.3317 41 1 7.6267 -5.1746 4.8791 42 1 7.4941 -3.5281 5.5636 43 1 10.2208 -4.2357 5.2297 44 1 10.7877 -3.2937 3.8298 45 1 10.3304 -5.2257 2.3444 46 1 9.7635 -6.1677 3.7442 47 1 12.0237 -8.4754 1.9759 48 1 7.0454 -2.5954 0.6633 49 1 5.9412 -3.8842 1.2365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274576673.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:49 Heat of formation + Delta-G solvation = 24.849746 kcal Electronic energy + Delta-G solvation = -28481.237303 eV Core-core repulsion = 24636.724370 eV Total energy + Delta-G solvation = -3844.512933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 26.94 seconds Orbital eigenvalues (eV) -42.33413 -40.91604 -38.07725 -36.03861 -34.32790 -33.10178 -32.66382 -31.88281 -30.59840 -29.24553 -28.42989 -27.56464 -25.27803 -24.75452 -23.30053 -21.83612 -21.70233 -21.07397 -20.75032 -20.25639 -18.66956 -17.49598 -16.65771 -16.44817 -15.75502 -15.62144 -15.57561 -15.10375 -14.73959 -14.46123 -14.38378 -14.20790 -14.01248 -13.56512 -13.37244 -13.10518 -13.05975 -12.79983 -12.76230 -12.61348 -12.56803 -12.17330 -12.04796 -11.85875 -11.58463 -11.45785 -11.27826 -10.97104 -10.90006 -10.72604 -10.63005 -10.22010 -10.18592 -10.01545 -9.89800 -9.39184 -9.14451 -8.82572 -8.43263 -8.40164 -8.04497 -6.05264 -4.08734 1.73185 2.81271 2.86523 2.94143 3.29227 3.35451 3.38872 3.49043 3.87411 4.17846 4.30643 4.39118 4.42624 4.43403 4.66755 4.80523 4.85884 4.89565 5.04574 5.10347 5.13565 5.17362 5.27161 5.30925 5.32114 5.42537 5.45061 5.55693 5.56853 5.67691 5.70071 5.76676 5.85111 5.88257 5.91998 5.99208 6.04589 6.09080 6.43805 6.49049 6.55077 6.70035 6.77838 6.97347 7.13201 7.47119 7.63658 7.81744 7.84484 7.94323 8.30500 8.62963 8.97894 9.55422 11.06112 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.028403 B = 0.002094 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.563985 B =13369.341168 C =13543.574637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.203 3.797 3 N -0.491 5.491 4 C -0.019 4.019 5 C -0.007 4.007 6 C 0.114 3.886 7 N -0.506 5.506 8 C 0.038 3.962 9 C -0.099 4.099 10 C -0.099 4.099 11 C -0.114 4.114 12 C 0.099 3.901 13 N -0.609 5.609 14 C 0.127 3.873 15 C 0.013 3.987 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.524 3.476 25 O -0.530 6.530 26 C 0.054 3.946 27 N -0.554 5.554 28 H 0.419 0.581 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.166 0.834 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.020 0.980 46 H 0.017 0.983 47 H 0.261 0.739 48 H 0.062 0.938 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.092 11.833 -0.949 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.061 4.061 3 N -0.211 5.211 4 C -0.168 4.168 5 C -0.123 4.123 6 C -0.015 4.015 7 N -0.231 5.231 8 C -0.090 4.090 9 C -0.137 4.137 10 C -0.103 4.103 11 C -0.151 4.151 12 C -0.025 4.025 13 N -0.342 5.342 14 C 0.007 3.993 15 C -0.025 4.025 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.310 3.690 25 O -0.407 6.407 26 C -0.074 4.074 27 N -0.158 5.158 28 H 0.256 0.744 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.184 0.816 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.039 0.961 46 H 0.035 0.965 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.325 12.530 -1.225 26.505 hybrid contribution 1.947 -1.462 -0.173 2.441 sum -21.378 11.067 -1.397 24.113 Atomic orbital electron populations 1.20171 0.84910 1.04058 1.03450 1.23231 0.95531 0.81765 1.05599 1.70236 1.02118 1.28651 1.20103 1.22087 0.94770 0.92024 1.07966 1.20982 0.85204 0.95206 1.10890 1.20604 0.92154 0.97761 0.90983 1.65532 1.35545 1.10862 1.11111 1.23171 0.98086 0.92845 0.94901 1.22155 0.99818 0.93419 0.98335 1.21362 0.94344 0.97516 0.97096 1.22646 0.97195 0.98019 0.97267 1.22116 0.84771 1.01267 0.94300 1.48632 1.08339 1.48319 1.28897 1.21816 0.77824 0.99765 0.99893 1.19395 0.96549 0.90483 0.96089 1.21089 0.97665 1.08419 1.28954 0.92466 1.25009 0.97902 0.96422 0.94980 1.69972 1.36522 1.15230 1.31434 0.86542 0.84684 0.78652 0.77823 1.20621 1.21170 1.19777 1.20186 0.89516 0.78426 0.80865 1.90692 1.58267 1.50530 1.41211 1.22963 0.91768 0.97641 0.95036 1.43060 1.06232 1.10006 1.56473 0.74365 0.90271 0.90825 0.89167 0.81638 0.91514 0.89753 0.89864 0.93143 0.90073 0.90793 0.89829 0.89268 0.90080 0.91611 0.91606 0.91142 0.96145 0.96465 0.92929 0.91947 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.20 1.84 8.15 -155.41 -1.27 0.58 16 3 N -0.49 -5.84 11.25 -10.81 -0.12 -5.96 16 4 C -0.02 -0.21 11.64 -17.81 -0.21 -0.42 16 5 C -0.01 -0.06 6.28 -81.60 -0.51 -0.57 16 6 C 0.11 1.04 5.37 -4.97 -0.03 1.02 16 7 N -0.51 -5.18 5.36 -231.60 -1.24 -6.43 16 8 C 0.04 0.39 5.88 -1.99 -0.01 0.38 16 9 C -0.10 -1.09 6.32 -25.74 -0.16 -1.26 16 10 C -0.10 -1.28 0.83 -155.25 -0.13 -1.41 16 11 C -0.11 -1.25 6.24 -25.51 -0.16 -1.41 16 12 C 0.10 1.30 7.36 -2.94 -0.02 1.28 16 13 N -0.61 -10.88 2.94 -172.52 -0.51 -11.39 16 14 C 0.13 2.67 5.89 -4.04 -0.02 2.65 16 15 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 16 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 20 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.52 9.50 6.64 -11.22 -0.07 9.42 16 25 O -0.53 -11.78 17.09 5.56 0.09 -11.69 16 26 C 0.05 0.66 5.65 -2.57 -0.01 0.64 16 27 N -0.55 -4.47 6.15 -6.54 -0.04 -4.51 16 28 H 0.42 2.27 8.96 -40.82 -0.37 1.90 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 33 H 0.07 0.62 7.88 -51.93 -0.41 0.21 16 34 H 0.08 0.69 8.13 -51.93 -0.42 0.26 16 35 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 36 H 0.05 0.54 7.81 -51.93 -0.41 0.14 16 37 H 0.08 0.76 7.32 -51.93 -0.38 0.38 16 38 H 0.07 0.90 7.75 -51.93 -0.40 0.50 16 39 H 0.08 0.91 7.51 -51.93 -0.39 0.52 16 40 H 0.09 0.78 7.42 -51.93 -0.39 0.39 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.57 7.93 -51.93 -0.41 1.16 16 45 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.06 0.89 7.39 -51.93 -0.38 0.50 16 49 H 0.09 1.02 7.46 -51.92 -0.39 0.64 16 LS Contribution 396.51 15.07 5.98 5.98 Total: -1.00 -35.46 396.51 -11.03 -46.48 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -8.11 Total: -0.60 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -2.79 Total: -2.37 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -1.18 Total: -54.41 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.46 -11.03 -46.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274576673.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.335 kcal (2) G-P(sol) polarization free energy of solvation -35.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.94 seconds