Wall clock time and date at job start Tue Mar 31 2020 20:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30506 * 125.64608 * 2 1 4 4 C 1.34126 * 109.25016 * 180.02562 * 3 2 1 5 5 C 1.34668 * 108.02271 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.58835 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47038 * 95.02494 * 6 5 4 8 8 C 1.48646 * 111.00084 * 290.12577 * 7 6 5 9 9 C 1.54642 * 104.63364 * 201.49077 * 8 7 6 10 10 C 1.53250 * 104.67647 * 23.68066 * 9 8 7 11 11 C 1.53615 * 111.05504 * 239.01799 * 10 9 8 12 12 C 1.54706 * 101.50972 * 262.68393 * 11 10 9 13 13 N 1.46881 * 105.51455 * 335.46933 * 12 11 10 14 14 C 1.46507 * 124.37154 * 196.78826 * 13 12 11 15 15 C 1.53004 * 109.46773 * 90.00435 * 14 13 12 16 16 C 1.50695 * 109.46637 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00546 * 0.27598 * 16 15 14 18 18 C 1.37885 * 119.99721 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00035 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99853 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46986 * 90.00256 * 20 18 16 22 22 H 1.48496 * 109.47029 * 210.00273 * 20 18 16 23 23 H 1.48499 * 109.47352 * 330.00102 * 20 18 16 24 24 C 1.34756 * 111.25708 * 17.06105 * 13 12 11 25 25 O 1.21278 * 125.13512 * 178.73690 * 24 13 12 26 26 C 1.48798 * 110.99973 * 174.50687 * 7 6 5 27 27 N 1.35038 * 125.65252 * 180.31635 * 2 1 3 28 28 H 0.97001 * 126.39268 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.46746 * 89.97242 * 1 2 3 30 30 H 1.08998 * 109.46847 * 209.97667 * 1 2 3 31 31 H 1.08997 * 109.46951 * 329.97653 * 1 2 3 32 32 H 1.08003 * 125.98875 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47629 * 335.02687 * 6 5 4 34 34 H 1.09000 * 109.46755 * 215.02093 * 6 5 4 35 35 H 1.08996 * 110.40741 * 82.70085 * 8 7 6 36 36 H 1.08995 * 110.40266 * 320.27930 * 8 7 6 37 37 H 1.09003 * 110.39286 * 264.88295 * 9 8 7 38 38 H 1.08997 * 110.49462 * 142.53496 * 9 8 7 39 39 H 1.08997 * 111.02055 * 144.62343 * 11 10 9 40 40 H 1.09003 * 111.01806 * 20.73748 * 11 10 9 41 41 H 1.08997 * 110.23438 * 216.46202 * 12 11 10 42 42 H 1.08995 * 110.31108 * 94.51899 * 12 11 10 43 43 H 1.09000 * 109.46860 * 330.00633 * 14 13 12 44 44 H 1.08997 * 109.47067 * 209.99984 * 14 13 12 45 45 H 1.08992 * 109.47421 * 60.00163 * 15 14 13 46 46 H 1.08997 * 109.46955 * 299.99616 * 15 14 13 47 47 H 0.97000 * 119.99706 * 179.97438 * 19 18 16 48 48 H 1.09001 * 110.46013 * 39.48479 * 26 7 6 49 49 H 1.09008 * 110.46009 * 276.91608 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2677 1.0605 0.0000 4 6 3.5544 0.6819 -0.0006 5 6 3.5926 -0.6642 -0.0004 6 6 4.8277 -1.5278 -0.0014 7 7 5.1607 -1.9075 1.3781 8 6 5.6486 -0.7349 2.1504 9 6 6.4534 -1.3456 3.3212 10 6 6.8732 -2.7324 2.8221 11 6 6.3345 -3.8370 3.7438 12 6 7.5610 -4.1120 4.6457 13 7 8.7286 -3.6913 3.8600 14 6 10.1092 -4.0817 4.1564 15 6 10.4419 -5.3796 3.4176 16 6 11.8619 -5.7815 3.7230 17 1 12.4651 -5.1746 4.3820 18 6 12.3889 -6.9275 3.1661 19 7 11.6527 -7.6694 2.3680 20 14 14.1493 -7.4253 3.5441 21 1 14.1699 -8.2976 4.7457 22 1 14.7143 -8.1639 2.3864 23 1 14.9632 -6.2100 3.8007 24 6 8.3665 -2.8952 2.8348 25 8 9.1307 -2.3885 2.0410 26 6 6.2968 -2.8680 1.4072 27 7 2.2942 -1.0973 -0.0061 28 1 1.9952 -2.0200 -0.0108 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 4.4099 1.3411 -0.0003 33 1 5.6589 -0.9727 -0.4361 34 1 4.6426 -2.4258 -0.5908 35 1 4.8084 -0.1532 2.5294 36 1 6.2934 -0.1128 1.5298 37 1 5.8255 -1.4349 4.2078 38 1 7.3318 -0.7380 3.5384 39 1 6.0624 -4.7246 3.1726 40 1 5.4896 -3.4782 4.3317 41 1 7.6267 -5.1746 4.8791 42 1 7.4941 -3.5281 5.5636 43 1 10.2208 -4.2357 5.2297 44 1 10.7877 -3.2937 3.8298 45 1 10.3304 -5.2257 2.3444 46 1 9.7635 -6.1677 3.7442 47 1 12.0237 -8.4754 1.9759 48 1 7.0454 -2.5954 0.6633 49 1 5.9412 -3.8842 1.2365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274576673.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:36 Heat of formation + Delta-G solvation = 0.104687 kcal Electronic energy + Delta-G solvation = -28482.310330 eV Core-core repulsion = 24636.724370 eV Total energy + Delta-G solvation = -3845.585959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.04606 -42.10558 -39.18201 -37.50453 -35.88954 -34.61215 -33.45159 -32.95316 -31.67384 -30.57051 -29.47664 -28.46854 -26.97415 -25.75605 -24.39655 -23.53021 -22.53516 -21.83372 -21.65481 -21.42361 -19.96604 -18.69591 -18.25185 -17.41740 -17.21713 -16.75890 -16.61778 -16.36613 -16.12635 -15.65185 -15.41261 -15.17183 -14.87624 -14.69692 -14.53767 -14.43198 -14.26869 -13.92662 -13.78517 -13.58435 -13.46059 -13.35539 -13.15005 -12.92212 -12.83892 -12.69252 -12.59964 -12.47736 -12.31312 -12.01186 -11.97652 -11.75590 -11.59416 -11.42625 -10.96177 -10.94119 -10.69645 -10.60392 -9.71226 -9.57138 -9.17570 -8.25539 -6.38183 1.02186 1.37826 1.40313 1.50450 1.53330 2.08238 2.14746 2.21126 2.39952 2.92937 3.07976 3.33185 3.35839 3.48829 3.63846 3.87558 3.97888 4.02942 4.09105 4.24115 4.30106 4.31910 4.38431 4.46069 4.49140 4.51701 4.61171 4.65524 4.69947 4.75081 4.79199 4.81968 4.86351 4.90392 4.96256 5.05077 5.06557 5.14161 5.18023 5.27270 5.31782 5.44874 5.57771 5.63528 5.76465 5.80922 5.84688 6.13514 6.27902 6.56651 6.76956 7.13799 7.18477 7.31616 8.86510 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.028403 B = 0.002094 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.563985 B =13369.341168 C =13543.574637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.205 3.795 3 N -0.532 5.532 4 C -0.040 4.040 5 C -0.005 4.005 6 C 0.116 3.884 7 N -0.493 5.493 8 C 0.041 3.959 9 C -0.094 4.094 10 C -0.092 4.092 11 C -0.100 4.100 12 C 0.092 3.908 13 N -0.617 5.617 14 C 0.141 3.859 15 C 0.025 3.975 16 C -0.546 4.546 17 H 0.066 0.934 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.970 3.030 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.265 1.265 24 C 0.510 3.490 25 O -0.585 6.585 26 C 0.056 3.944 27 N -0.546 5.546 28 H 0.432 0.568 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.166 0.834 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.039 0.961 37 H 0.111 0.889 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.051 0.949 45 H -0.027 1.027 46 H 0.002 0.998 47 H 0.265 0.735 48 H 0.034 0.966 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.005 11.403 0.772 27.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.060 4.060 3 N -0.253 5.253 4 C -0.188 4.188 5 C -0.122 4.122 6 C -0.013 4.013 7 N -0.217 5.217 8 C -0.087 4.087 9 C -0.132 4.132 10 C -0.096 4.096 11 C -0.138 4.138 12 C -0.030 4.030 13 N -0.349 5.349 14 C 0.019 3.981 15 C -0.013 4.013 16 C -0.584 4.584 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.794 3.206 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.189 1.189 24 C 0.298 3.702 25 O -0.466 6.466 26 C -0.072 4.072 27 N -0.150 5.150 28 H 0.273 0.727 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.183 0.817 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.058 0.942 37 H 0.129 0.871 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.146 0.854 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.069 0.931 45 H -0.009 1.009 46 H 0.021 0.979 47 H 0.073 0.927 48 H 0.052 0.948 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -25.282 12.084 0.528 28.027 hybrid contribution 2.503 -1.316 -0.757 2.928 sum -22.779 10.767 -0.228 25.197 Atomic orbital electron populations 1.20341 0.82220 1.05233 1.04637 1.23930 0.96958 0.81345 1.03727 1.70221 1.02748 1.30359 1.21988 1.22242 0.94888 0.92844 1.08865 1.20868 0.85794 0.94694 1.10875 1.20599 0.91950 0.98231 0.90496 1.65567 1.33942 1.10431 1.11721 1.23151 0.98120 0.92775 0.94612 1.22193 0.99730 0.91713 0.99563 1.21342 0.90230 0.99683 0.98307 1.22712 0.97183 0.97277 0.96588 1.22475 0.83553 1.01691 0.95275 1.48748 1.08372 1.48110 1.29644 1.21371 0.79933 0.96434 1.00353 1.19195 0.95868 0.92593 0.93628 1.21547 0.98801 1.08825 1.29219 0.91596 1.26020 1.02818 0.96385 0.94583 1.70109 1.38779 1.15780 1.32457 0.85369 0.78650 0.78556 0.78000 1.19037 1.20935 1.18890 1.21170 0.91767 0.77442 0.79808 1.90646 1.60295 1.52579 1.43042 1.22905 0.91736 0.98680 0.93895 1.43033 1.05516 1.10680 1.55814 0.72739 0.88989 0.88374 0.89243 0.81659 0.92132 0.88470 0.88861 0.94250 0.87074 0.92289 0.89599 0.85410 0.90278 0.88480 0.89072 0.93075 1.00877 0.97941 0.92677 0.94803 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.51 71.24 0.75 0.23 16 2 C 0.20 3.39 8.15 138.13 1.13 4.51 16 3 N -0.53 -12.36 11.25 -188.12 -2.12 -14.47 16 4 C -0.04 -0.86 11.64 83.52 0.97 0.11 16 5 C -0.01 -0.10 6.28 40.95 0.26 0.16 16 6 C 0.12 2.03 5.37 85.56 0.46 2.49 16 7 N -0.49 -9.37 5.36 -886.63 -4.75 -14.12 16 8 C 0.04 0.81 5.88 86.52 0.51 1.32 16 9 C -0.09 -1.90 6.32 31.24 0.20 -1.70 16 10 C -0.09 -2.28 0.83 -52.66 -0.04 -2.32 16 11 C -0.10 -1.90 6.24 31.38 0.20 -1.71 16 12 C 0.09 2.20 7.36 86.89 0.64 2.84 16 13 N -0.62 -22.14 2.94 -818.15 -2.41 -24.55 16 14 C 0.14 6.06 5.89 86.38 0.51 6.57 16 15 C 0.03 1.37 5.30 29.85 0.16 1.52 16 16 C -0.55 -31.41 9.11 25.60 0.23 -31.17 16 17 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 18 C 0.00 0.01 5.46 84.66 0.46 0.47 16 19 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 20 Si 0.97 44.53 29.54 68.60 2.03 46.55 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 23 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 24 C 0.51 18.98 6.64 87.51 0.58 19.56 16 25 O -0.58 -27.65 17.09 -3.02 -0.05 -27.71 16 26 C 0.06 1.34 5.65 86.06 0.49 1.83 16 27 N -0.55 -7.72 6.15 -174.60 -1.07 -8.80 16 28 H 0.43 3.54 8.96 -92.71 -0.83 2.71 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.06 1.15 7.88 -2.39 -0.02 1.14 16 34 H 0.10 1.46 8.13 -2.39 -0.02 1.44 16 35 H 0.09 1.69 8.13 -2.39 -0.02 1.67 16 36 H 0.04 0.86 7.81 -2.39 -0.02 0.84 16 37 H 0.11 1.61 7.32 -2.39 -0.02 1.60 16 38 H 0.06 1.40 7.75 -2.39 -0.02 1.38 16 39 H 0.09 1.63 7.51 -2.39 -0.02 1.62 16 40 H 0.13 1.54 7.42 -2.39 -0.02 1.52 16 41 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 44 H 0.05 2.37 7.93 -2.39 -0.02 2.35 16 45 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 46 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.26 15.24 8.31 -92.71 -0.77 14.46 16 48 H 0.03 1.01 7.39 -2.39 -0.02 0.99 16 49 H 0.10 2.17 7.46 -2.38 -0.02 2.16 16 Total: -1.00 -81.17 396.51 -0.49 -81.65 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.12 Total: 13.80 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 7.49 Total: 4.71 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -10.07 Total: -119.01 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -81.17 -0.49 -81.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274576673.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.757 kcal (2) G-P(sol) polarization free energy of solvation -81.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds