Wall clock time and date at job start Tue Mar 31 2020 17:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31818 * 119.12426 * 2 1 4 4 C 1.32315 * 120.81751 * 179.97438 * 3 2 1 5 5 C 1.38613 * 119.10491 * 0.02562 * 4 3 2 6 6 C 1.38574 * 118.39975 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.44751 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47257 * 125.00363 * 7 6 5 9 9 C 1.50701 * 109.47257 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99995 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00310 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00368 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.45785 * 324.98155 * 12 11 9 14 14 C 1.53043 * 109.45572 * 84.93669 * 12 11 9 15 15 C 1.53186 * 109.31296 * 181.38626 * 14 12 11 16 16 N 1.46926 * 108.77700 * 305.36486 * 15 14 12 17 17 C 1.36938 * 120.63138 * 233.62854 * 16 15 14 18 18 H 1.08001 * 119.99376 * 150.14595 * 17 16 15 19 19 C 1.38809 * 120.00241 * 330.14637 * 17 16 15 20 20 N 1.31622 * 119.99625 * 344.49772 * 19 17 16 21 21 Si 1.86796 * 120.00200 * 164.49676 * 19 17 16 22 22 H 1.48500 * 109.47059 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47229 * 120.00014 * 21 19 17 24 24 H 1.48504 * 109.47271 * 239.99881 * 21 19 17 25 25 C 1.46929 * 118.73449 * 53.61023 * 16 15 14 26 26 H 1.08998 * 109.71141 * 66.24926 * 25 16 15 27 27 C 1.53003 * 109.58138 * 186.60539 * 25 16 15 28 28 C 1.53036 * 109.46140 * 205.00385 * 12 11 9 29 29 N 1.31772 * 119.12572 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47150 * 90.00219 * 1 2 3 31 31 H 1.08995 * 109.47144 * 210.00055 * 1 2 3 32 32 H 1.08997 * 109.47412 * 330.00386 * 1 2 3 33 33 H 1.07997 * 120.44461 * 180.02562 * 4 3 2 34 34 H 1.08004 * 120.79922 * 179.73005 * 5 4 3 35 35 H 1.09007 * 109.47247 * 245.00104 * 7 6 5 36 36 H 1.09003 * 109.47229 * 5.00151 * 7 6 5 37 37 H 1.08996 * 109.46929 * 299.99521 * 8 7 6 38 38 H 1.08999 * 109.47511 * 60.00111 * 8 7 6 39 39 H 0.97003 * 119.99347 * 0.02562 * 11 9 8 40 40 H 1.09000 * 109.49626 * 301.33822 * 14 12 11 41 41 H 1.08997 * 109.49563 * 61.43426 * 14 12 11 42 42 H 1.09002 * 109.58794 * 185.57542 * 15 14 12 43 43 H 1.09003 * 109.58848 * 65.15248 * 15 14 12 44 44 H 0.96999 * 119.99885 * 180.02562 * 20 19 17 45 45 H 1.09006 * 109.47047 * 179.28453 * 27 25 16 46 46 H 1.09000 * 109.47308 * 299.28421 * 27 25 16 47 47 H 1.09003 * 109.47181 * 59.28939 * 27 25 16 48 48 H 1.09002 * 109.49725 * 298.56693 * 28 12 11 49 49 H 1.09000 * 109.49957 * 58.66937 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1906 0.0005 5 6 4.1808 0.0000 0.0005 6 6 3.4712 -1.1903 0.0005 7 6 4.1961 -2.5115 -0.0001 8 6 3.7164 -3.3570 1.1815 9 6 4.4408 -4.6784 1.1805 10 8 5.2598 -4.9205 0.3193 11 7 4.1787 -5.5914 2.1367 12 6 4.8825 -6.8763 2.1355 13 1 5.0553 -7.1946 1.1074 14 6 6.2250 -6.7228 2.8539 15 6 6.9732 -8.0591 2.8205 16 7 6.1040 -9.1020 3.3822 17 6 6.5420 -9.8982 4.4066 18 1 5.8362 -10.2964 5.1206 19 6 7.8929 -10.1935 4.5273 20 7 8.7067 -9.9773 3.5156 21 14 8.5559 -10.8978 6.1253 22 1 7.4452 -11.0446 7.1000 23 1 9.1659 -12.2265 5.8653 24 1 9.5838 -9.9815 6.6813 25 6 4.7557 -9.2739 2.8242 26 1 4.8260 -9.6254 1.7948 27 6 3.9800 -10.2924 3.6620 28 6 4.0323 -7.9240 2.8576 29 7 2.1483 -1.1511 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 3.9906 2.1374 0.0009 34 1 5.2608 -0.0001 -0.0035 35 1 3.9897 -3.0388 -0.9316 36 1 5.2684 -2.3377 0.0891 37 1 3.9228 -2.8298 2.1129 38 1 2.6441 -3.5309 1.0923 39 1 3.5234 -5.3979 2.8253 40 1 6.8206 -5.9597 2.3529 41 1 6.0521 -6.4284 3.8891 42 1 7.8838 -7.9830 3.4148 43 1 7.2267 -8.3103 1.7905 44 1 9.6507 -10.1840 3.5998 45 1 2.9760 -10.4091 3.2541 46 1 4.4963 -11.2521 3.6369 47 1 3.9151 -9.9415 4.6920 48 1 3.8801 -7.6183 3.8928 49 1 3.0673 -8.0159 2.3592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281670351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:52 Heat of formation + Delta-G solvation = 15.475999 kcal Electronic energy + Delta-G solvation = -27974.283832 eV Core-core repulsion = 24129.364423 eV Total energy + Delta-G solvation = -3844.919409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.43650 -39.74797 -37.72115 -35.41787 -34.52611 -33.75139 -32.44624 -31.95197 -31.10277 -29.50494 -28.85134 -26.54956 -26.03408 -24.64825 -23.49866 -22.31430 -21.83992 -20.82256 -20.00962 -19.17158 -17.94028 -17.23693 -16.45027 -16.16103 -15.92620 -15.53640 -15.46756 -15.38698 -15.03639 -14.09395 -13.93897 -13.83181 -13.66752 -13.44634 -13.26484 -13.07560 -12.97029 -12.77397 -12.61738 -12.55186 -12.30050 -11.60425 -11.52897 -11.21270 -11.17797 -11.10793 -10.91353 -10.89254 -10.81730 -10.66146 -10.29493 -10.13480 -10.03793 -9.81818 -9.73414 -9.70163 -9.55505 -9.31353 -8.69016 -8.42002 -6.62908 -5.76870 -3.21145 0.55349 0.71836 2.80057 3.26460 3.36895 3.42344 3.44907 3.46521 3.56195 3.74875 4.14584 4.49229 4.54757 4.70454 4.81913 4.88027 4.96217 5.03441 5.12921 5.17701 5.27802 5.37046 5.39779 5.45543 5.49194 5.54417 5.60082 5.73459 5.78631 5.81510 6.00437 6.09436 6.16205 6.26964 6.32261 6.42796 6.44071 6.52474 6.65525 6.69210 6.79521 6.90958 7.03995 7.10467 7.38626 7.67668 7.73477 7.77191 7.83463 8.41365 8.47878 9.22981 9.86559 10.44081 11.31841 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.024528 B = 0.002015 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.281001 B =13891.395236 C =14459.867152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.318 3.682 3 N -0.528 5.528 4 C 0.152 3.848 5 C -0.232 4.232 6 C 0.186 3.814 7 C -0.056 4.056 8 C -0.132 4.132 9 C 0.510 3.490 10 O -0.542 6.542 11 N -0.725 5.725 12 C 0.150 3.850 13 H 0.081 0.919 14 C -0.146 4.146 15 C 0.175 3.825 16 N -0.587 5.587 17 C -0.250 4.250 18 H 0.070 0.930 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.171 3.829 26 H 0.027 0.973 27 C -0.135 4.135 28 C -0.134 4.134 29 N -0.517 5.517 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.395 0.605 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.020 0.980 44 H 0.253 0.747 45 H 0.038 0.962 46 H 0.062 0.938 47 H 0.053 0.947 48 H 0.063 0.937 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.151 19.800 -5.338 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 N -0.243 5.243 4 C -0.013 4.013 5 C -0.254 4.254 6 C 0.039 3.961 7 C -0.094 4.094 8 C -0.172 4.172 9 C 0.296 3.704 10 O -0.420 6.420 11 N -0.374 5.374 12 C 0.047 3.953 13 H 0.099 0.901 14 C -0.186 4.186 15 C 0.049 3.951 16 N -0.311 5.311 17 C -0.380 4.380 18 H 0.088 0.912 19 C -0.197 4.197 20 N -0.546 5.546 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.063 3.937 26 H 0.044 0.956 27 C -0.193 4.193 28 C -0.174 4.174 29 N -0.232 5.232 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.186 0.814 34 H 0.167 0.833 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.228 0.772 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.038 0.962 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.081 0.919 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.374 19.559 -5.962 24.994 hybrid contribution 1.208 -0.108 1.133 1.660 sum -13.166 19.451 -4.829 23.980 Atomic orbital electron populations 1.20572 0.85687 1.04214 1.03921 1.23293 0.98223 0.83357 0.90041 1.68266 1.10236 1.30550 1.15235 1.23238 0.89667 0.98684 0.89731 1.22821 1.03181 0.94117 1.05282 1.21802 0.89548 0.95991 0.88716 1.20369 0.99393 0.89585 1.00101 1.21546 1.02243 0.93706 0.99718 1.20511 0.82782 0.85654 0.81463 1.90719 1.34611 1.79181 1.37461 1.46333 1.43613 1.17610 1.29875 1.21038 0.92388 0.81252 1.00650 0.90112 1.22560 0.95723 1.01176 0.99169 1.20729 0.93628 0.83339 0.97407 1.44166 1.10618 1.36648 1.39657 1.19195 0.91673 1.24819 1.02292 0.91238 1.25121 0.97741 0.99608 0.97217 1.70036 1.03932 1.51873 1.28747 0.86264 0.78827 0.78363 0.83552 1.20289 1.21775 1.21660 1.20361 0.86712 0.91013 0.95584 0.95580 1.21793 0.97513 1.00111 0.99856 1.22375 0.97727 0.97306 0.99956 1.68089 1.09604 1.30519 1.14981 0.89618 0.89503 0.89653 0.81431 0.83294 0.88357 0.88777 0.89246 0.87970 0.77185 0.92951 0.92754 0.89425 0.96169 0.93716 0.94320 0.91884 0.92781 0.91853 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.32 36.00 0.37 -0.19 16 2 C 0.32 3.11 7.64 -157.20 -1.20 1.91 16 3 N -0.53 -5.18 10.34 -10.73 -0.11 -5.29 16 4 C 0.15 1.19 11.31 -17.20 -0.19 0.99 16 5 C -0.23 -1.82 9.80 -39.32 -0.39 -2.21 16 6 C 0.19 1.78 6.20 -82.25 -0.51 1.27 16 7 C -0.06 -0.55 4.94 -27.88 -0.14 -0.69 16 8 C -0.13 -1.30 5.57 -27.88 -0.16 -1.45 16 9 C 0.51 7.05 7.79 -10.99 -0.09 6.96 16 10 O -0.54 -9.69 15.65 5.55 0.09 -9.60 16 11 N -0.72 -9.78 5.08 -53.77 -0.27 -10.06 16 12 C 0.15 2.57 2.42 -67.89 -0.16 2.41 16 13 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 14 C -0.15 -2.87 5.65 -26.61 -0.15 -3.02 16 15 C 0.18 4.21 5.28 -3.71 -0.02 4.19 16 16 N -0.59 -14.29 2.99 -164.77 -0.49 -14.78 16 17 C -0.25 -6.62 8.58 -15.06 -0.13 -6.75 16 18 H 0.07 1.79 6.23 -52.49 -0.33 1.47 16 19 C 0.00 0.05 4.94 -17.43 -0.09 -0.04 16 20 N -0.90 -26.11 11.23 55.49 0.62 -25.49 16 21 Si 0.90 21.48 29.58 -169.99 -5.03 16.45 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.17 3.45 3.50 -67.59 -0.24 3.22 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 C -0.14 -2.47 7.95 37.16 0.30 -2.17 16 28 C -0.13 -2.21 4.84 -26.61 -0.13 -2.34 16 29 N -0.52 -5.42 9.94 -6.99 -0.07 -5.49 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.15 0.82 8.01 -52.48 -0.42 0.40 16 35 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.09 0.88 7.90 -51.93 -0.41 0.47 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.93 7.98 -51.93 -0.41 0.52 16 39 H 0.39 4.19 8.60 -40.82 -0.35 3.83 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 2.36 6.15 -51.93 -0.32 2.04 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 1.25 7.67 -51.93 -0.40 0.85 16 47 H 0.05 0.99 7.40 -51.93 -0.38 0.61 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 394.38 15.07 5.94 5.94 Total: -1.00 -32.95 394.38 -10.28 -43.24 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -8.05 Total: 2.97 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -2.92 Total: 2.11 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.32 Total: -61.11 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.95 -10.28 -43.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281670351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.712 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds