Wall clock time and date at job start Tue Mar 31 2020 17:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31818 * 119.12426 * 2 1 4 4 C 1.32315 * 120.81751 * 179.97438 * 3 2 1 5 5 C 1.38613 * 119.10491 * 0.02562 * 4 3 2 6 6 C 1.38574 * 118.39975 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.44751 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47257 * 125.00363 * 7 6 5 9 9 C 1.50701 * 109.47257 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99995 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00310 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00368 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.45785 * 324.98155 * 12 11 9 14 14 C 1.53043 * 109.45572 * 84.93669 * 12 11 9 15 15 C 1.53186 * 109.31296 * 181.38626 * 14 12 11 16 16 N 1.46926 * 108.77700 * 305.36486 * 15 14 12 17 17 C 1.36938 * 120.63138 * 233.62854 * 16 15 14 18 18 H 1.08001 * 119.99376 * 150.14595 * 17 16 15 19 19 C 1.38809 * 120.00241 * 330.14637 * 17 16 15 20 20 N 1.31622 * 119.99625 * 344.49772 * 19 17 16 21 21 Si 1.86796 * 120.00200 * 164.49676 * 19 17 16 22 22 H 1.48500 * 109.47059 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47229 * 120.00014 * 21 19 17 24 24 H 1.48504 * 109.47271 * 239.99881 * 21 19 17 25 25 C 1.46929 * 118.73449 * 53.61023 * 16 15 14 26 26 H 1.08998 * 109.71141 * 66.24926 * 25 16 15 27 27 C 1.53003 * 109.58138 * 186.60539 * 25 16 15 28 28 C 1.53036 * 109.46140 * 205.00385 * 12 11 9 29 29 N 1.31772 * 119.12572 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47150 * 90.00219 * 1 2 3 31 31 H 1.08995 * 109.47144 * 210.00055 * 1 2 3 32 32 H 1.08997 * 109.47412 * 330.00386 * 1 2 3 33 33 H 1.07997 * 120.44461 * 180.02562 * 4 3 2 34 34 H 1.08004 * 120.79922 * 179.73005 * 5 4 3 35 35 H 1.09007 * 109.47247 * 245.00104 * 7 6 5 36 36 H 1.09003 * 109.47229 * 5.00151 * 7 6 5 37 37 H 1.08996 * 109.46929 * 299.99521 * 8 7 6 38 38 H 1.08999 * 109.47511 * 60.00111 * 8 7 6 39 39 H 0.97003 * 119.99347 * 0.02562 * 11 9 8 40 40 H 1.09000 * 109.49626 * 301.33822 * 14 12 11 41 41 H 1.08997 * 109.49563 * 61.43426 * 14 12 11 42 42 H 1.09002 * 109.58794 * 185.57542 * 15 14 12 43 43 H 1.09003 * 109.58848 * 65.15248 * 15 14 12 44 44 H 0.96999 * 119.99885 * 180.02562 * 20 19 17 45 45 H 1.09006 * 109.47047 * 179.28453 * 27 25 16 46 46 H 1.09000 * 109.47308 * 299.28421 * 27 25 16 47 47 H 1.09003 * 109.47181 * 59.28939 * 27 25 16 48 48 H 1.09002 * 109.49725 * 298.56693 * 28 12 11 49 49 H 1.09000 * 109.49957 * 58.66937 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1906 0.0005 5 6 4.1808 0.0000 0.0005 6 6 3.4712 -1.1903 0.0005 7 6 4.1961 -2.5115 -0.0001 8 6 3.7164 -3.3570 1.1815 9 6 4.4408 -4.6784 1.1805 10 8 5.2598 -4.9205 0.3193 11 7 4.1787 -5.5914 2.1367 12 6 4.8825 -6.8763 2.1355 13 1 5.0553 -7.1946 1.1074 14 6 6.2250 -6.7228 2.8539 15 6 6.9732 -8.0591 2.8205 16 7 6.1040 -9.1020 3.3822 17 6 6.5420 -9.8982 4.4066 18 1 5.8362 -10.2964 5.1206 19 6 7.8929 -10.1935 4.5273 20 7 8.7067 -9.9773 3.5156 21 14 8.5559 -10.8978 6.1253 22 1 7.4452 -11.0446 7.1000 23 1 9.1659 -12.2265 5.8653 24 1 9.5838 -9.9815 6.6813 25 6 4.7557 -9.2739 2.8242 26 1 4.8260 -9.6254 1.7948 27 6 3.9800 -10.2924 3.6620 28 6 4.0323 -7.9240 2.8576 29 7 2.1483 -1.1511 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 3.9906 2.1374 0.0009 34 1 5.2608 -0.0001 -0.0035 35 1 3.9897 -3.0388 -0.9316 36 1 5.2684 -2.3377 0.0891 37 1 3.9228 -2.8298 2.1129 38 1 2.6441 -3.5309 1.0923 39 1 3.5234 -5.3979 2.8253 40 1 6.8206 -5.9597 2.3529 41 1 6.0521 -6.4284 3.8891 42 1 7.8838 -7.9830 3.4148 43 1 7.2267 -8.3103 1.7905 44 1 9.6507 -10.1840 3.5998 45 1 2.9760 -10.4091 3.2541 46 1 4.4963 -11.2521 3.6369 47 1 3.9151 -9.9415 4.6920 48 1 3.8801 -7.6183 3.8928 49 1 3.0673 -8.0159 2.3592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281670351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:51 Heat of formation + Delta-G solvation = -5.520855 kcal Electronic energy + Delta-G solvation = -27975.194324 eV Core-core repulsion = 24129.364423 eV Total energy + Delta-G solvation = -3845.829901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.08125 -40.98279 -39.28608 -36.31552 -35.89331 -34.35311 -34.21517 -33.14875 -32.41173 -31.13773 -29.43143 -28.05530 -27.14810 -26.29303 -24.24374 -23.69703 -22.94872 -22.15212 -21.35004 -20.75460 -18.62164 -18.42516 -18.01621 -17.30800 -16.93629 -16.81250 -16.49681 -16.14116 -16.08058 -15.74678 -15.52861 -15.06382 -14.87168 -14.78477 -14.55687 -14.26131 -13.99511 -13.68664 -13.54920 -13.33139 -13.20513 -13.03825 -12.95039 -12.72082 -12.67137 -12.60304 -12.35814 -12.28257 -12.04986 -11.83427 -11.80881 -11.71263 -11.53510 -11.48344 -11.30046 -10.77907 -10.55772 -10.33407 -10.21707 -9.96534 -8.63516 -7.83451 -5.30299 -0.07787 0.08309 1.46640 1.48695 1.58682 1.69213 2.20781 2.52876 2.73996 2.93624 3.16626 3.32720 3.49232 3.60480 3.75934 3.89325 4.05469 4.09485 4.14029 4.16932 4.24228 4.28863 4.41135 4.49354 4.59228 4.62566 4.64574 4.73117 4.73682 4.77375 4.85219 4.86195 4.96054 4.98373 5.08313 5.09575 5.09820 5.13640 5.17909 5.40126 5.49526 5.50569 5.55832 5.61204 5.71921 5.74011 6.06308 6.44043 6.64082 7.12540 7.17755 7.33713 7.89442 8.42704 9.24077 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.024528 B = 0.002015 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.281001 B =13891.395236 C =14459.867152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.301 3.699 3 N -0.546 5.546 4 C 0.149 3.851 5 C -0.230 4.230 6 C 0.171 3.829 7 C -0.052 4.052 8 C -0.116 4.116 9 C 0.509 3.491 10 O -0.586 6.586 11 N -0.712 5.712 12 C 0.161 3.839 13 H 0.054 0.946 14 C -0.129 4.129 15 C 0.183 3.817 16 N -0.603 5.603 17 C -0.246 4.246 18 H 0.080 0.920 19 C -0.059 4.059 20 N -0.941 5.941 21 Si 0.964 3.036 22 H -0.261 1.261 23 H -0.297 1.297 24 H -0.295 1.295 25 C 0.158 3.842 26 H 0.009 0.991 27 C -0.127 4.127 28 C -0.118 4.118 29 N -0.534 5.534 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.200 0.800 34 H 0.172 0.828 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.415 0.585 40 H 0.045 0.955 41 H 0.061 0.939 42 H 0.053 0.947 43 H -0.014 1.014 44 H 0.246 0.754 45 H 0.077 0.923 46 H 0.038 0.962 47 H 0.055 0.945 48 H 0.076 0.924 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.675 21.442 -4.029 27.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.034 3.966 3 N -0.261 5.261 4 C -0.016 4.016 5 C -0.252 4.252 6 C 0.026 3.974 7 C -0.090 4.090 8 C -0.156 4.156 9 C 0.297 3.703 10 O -0.467 6.467 11 N -0.363 5.363 12 C 0.056 3.944 13 H 0.072 0.928 14 C -0.169 4.169 15 C 0.057 3.943 16 N -0.327 5.327 17 C -0.376 4.376 18 H 0.098 0.902 19 C -0.253 4.253 20 N -0.588 5.588 21 Si 0.793 3.207 22 H -0.185 1.185 23 H -0.224 1.224 24 H -0.222 1.222 25 C 0.052 3.948 26 H 0.027 0.973 27 C -0.184 4.184 28 C -0.157 4.157 29 N -0.250 5.250 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.217 0.783 34 H 0.189 0.811 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.251 0.749 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.004 0.996 44 H 0.055 0.945 45 H 0.095 0.905 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.094 0.906 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.969 21.218 -4.625 27.560 hybrid contribution 1.973 -0.593 0.637 2.157 sum -14.996 20.625 -3.988 25.810 Atomic orbital electron populations 1.20651 0.84020 1.04881 1.04614 1.23821 0.99465 0.83262 0.90009 1.68333 1.11299 1.30664 1.15834 1.23819 0.89256 1.00028 0.88506 1.23082 1.04353 0.93491 1.04253 1.21828 0.89657 0.96327 0.89628 1.20277 0.99569 0.89766 0.99381 1.21475 1.02165 0.91220 1.00765 1.21209 0.82072 0.86608 0.80394 1.90713 1.36681 1.80122 1.39159 1.46062 1.43502 1.16170 1.30560 1.20629 0.91651 0.83353 0.98760 0.92786 1.22294 0.96759 0.98012 0.99876 1.20437 0.93393 0.85899 0.94605 1.44431 1.12083 1.36566 1.39599 1.19571 0.91805 1.23626 1.02625 0.90246 1.25904 0.98345 1.01023 1.00069 1.70210 1.03732 1.54055 1.30787 0.85250 0.78248 0.76964 0.80280 1.18518 1.22400 1.22171 1.20653 0.85299 0.94043 0.94845 0.97282 1.21710 0.98884 0.98019 0.99781 1.22174 0.98203 0.94334 1.00985 1.68082 1.10074 1.31062 1.15782 0.88831 0.88948 0.88826 0.78321 0.81056 0.89859 0.88645 0.87135 0.86679 0.74860 0.93602 0.92003 0.92851 0.99608 0.94455 0.90452 0.94232 0.92594 0.90579 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.32 71.23 0.74 -0.23 16 2 C 0.30 5.46 7.64 138.75 1.06 6.52 16 3 N -0.55 -9.80 10.34 -187.85 -1.94 -11.74 16 4 C 0.15 1.99 11.31 84.71 0.96 2.95 16 5 C -0.23 -3.14 9.80 22.44 0.22 -2.92 16 6 C 0.17 3.03 6.20 42.56 0.26 3.29 16 7 C -0.05 -0.94 4.94 29.85 0.15 -0.80 16 8 C -0.12 -2.03 5.57 29.85 0.17 -1.86 16 9 C 0.51 13.32 7.79 87.66 0.68 14.00 16 10 O -0.59 -20.98 15.65 -3.05 -0.05 -21.03 16 11 N -0.71 -17.57 5.08 -442.40 -2.25 -19.81 16 12 C 0.16 5.35 2.42 45.02 0.11 5.46 16 13 H 0.05 2.12 7.58 -2.39 -0.02 2.11 16 14 C -0.13 -5.10 5.65 30.67 0.17 -4.93 16 15 C 0.18 9.20 5.28 86.36 0.46 9.66 16 16 N -0.60 -29.71 2.99 -675.22 -2.02 -31.73 16 17 C -0.25 -13.09 8.58 84.03 0.72 -12.36 16 18 H 0.08 4.01 6.23 -2.91 -0.02 4.00 16 19 C -0.06 -3.29 4.94 84.86 0.42 -2.87 16 20 N -0.94 -56.86 11.23 21.65 0.24 -56.62 16 21 Si 0.96 44.86 29.58 68.60 2.03 46.89 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 C 0.16 6.24 3.50 44.98 0.16 6.40 16 26 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 27 C -0.13 -4.34 7.95 71.98 0.57 -3.77 16 28 C -0.12 -3.56 4.84 30.67 0.15 -3.41 16 29 N -0.53 -10.44 9.94 -176.03 -1.75 -12.19 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.17 1.44 8.01 -2.91 -0.02 1.42 16 35 H 0.08 1.77 8.10 -2.38 -0.02 1.75 16 36 H 0.10 1.69 7.90 -2.39 -0.02 1.68 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.12 1.78 7.98 -2.39 -0.02 1.76 16 39 H 0.41 7.21 8.60 -92.71 -0.80 6.42 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.05 3.02 6.15 -2.39 -0.01 3.01 16 43 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 44 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 45 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 46 H 0.04 1.52 7.67 -2.39 -0.02 1.50 16 47 H 0.06 1.89 7.40 -2.39 -0.02 1.87 16 48 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -74.85 394.38 1.41 -73.44 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.15 Total: 17.67 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 6.99 Total: 15.12 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -7.71 Total: -132.09 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.05 Total: -21.03 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -74.85 1.41 -73.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281670351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.923 kcal (2) G-P(sol) polarization free energy of solvation -74.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds