Wall clock time and date at job start Tue Mar 31 2020 21:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50691 * 109.47126 * 2 1 4 4 C 1.38551 * 120.01699 * 125.27823 * 3 2 1 5 5 C 1.40068 * 117.82102 * 180.25970 * 4 3 2 6 6 C 1.48142 * 121.14795 * 179.74206 * 5 4 3 7 7 O 1.21511 * 120.00050 * 173.87228 * 6 5 4 8 8 N 1.34783 * 119.99600 * 353.86610 * 6 5 4 9 9 C 1.46499 * 119.99566 * 179.97438 * 8 6 5 10 10 H 1.09007 * 110.05596 * 33.59044 * 9 8 6 11 11 C 1.54259 * 110.03406 * 272.16934 * 9 8 6 12 12 C 1.54891 * 104.19785 * 264.32670 * 11 9 8 13 13 C 1.54963 * 102.77615 * 322.08396 * 12 11 9 14 14 C 1.53873 * 110.03207 * 155.00299 * 9 8 6 15 15 H 1.09003 * 110.02765 * 359.95060 * 14 9 8 16 16 C 1.53003 * 110.03456 * 238.57374 * 14 9 8 17 17 N 1.46502 * 109.47003 * 175.68842 * 16 14 9 18 18 C 1.36933 * 119.99509 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00488 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99828 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99882 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00012 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46997 * 179.97438 * 22 20 18 24 24 H 1.48505 * 109.46926 * 299.99436 * 22 20 18 25 25 H 1.48498 * 109.47482 * 59.99364 * 22 20 18 26 26 C 1.39768 * 117.70872 * 359.47416 * 5 4 3 27 27 C 1.50695 * 120.17584 * 180.25137 * 26 5 4 28 28 N 1.31896 * 119.64865 * 0.26983 * 26 5 4 29 29 N 1.28276 * 122.33641 * 359.97438 * 28 26 5 30 30 H 1.08992 * 109.47475 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47556 * 300.00175 * 1 2 3 32 32 H 1.09005 * 109.46880 * 59.99653 * 1 2 3 33 33 H 1.09001 * 109.47037 * 239.99895 * 2 1 3 34 34 H 1.08999 * 109.46488 * 120.00512 * 2 1 3 35 35 H 1.08005 * 121.08660 * 0.02562 * 4 3 2 36 36 H 0.96994 * 120.00376 * 0.02562 * 8 6 5 37 37 H 1.08999 * 110.48709 * 23.00725 * 11 9 8 38 38 H 1.09002 * 110.48677 * 145.51688 * 11 9 8 39 39 H 1.09002 * 110.75276 * 80.37282 * 12 11 9 40 40 H 1.09000 * 110.75573 * 203.74178 * 12 11 9 41 41 H 1.08996 * 110.47699 * 279.23372 * 13 12 11 42 42 H 1.08996 * 110.52716 * 156.56587 * 13 12 11 43 43 H 1.08996 * 109.46952 * 55.68550 * 16 14 9 44 44 H 1.08996 * 109.46762 * 295.68645 * 16 14 9 45 45 H 0.96997 * 120.00015 * 0.02562 * 17 16 14 46 46 H 0.97006 * 120.00125 * 0.02562 * 21 20 18 47 47 H 1.08999 * 109.47598 * 83.70925 * 27 26 5 48 48 H 1.08993 * 109.47283 * 203.71344 * 27 26 5 49 49 H 1.09003 * 109.46726 * 323.71059 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9166 1.8432 0.9794 5 6 3.3496 3.1747 0.9388 6 6 4.2902 3.7058 1.9526 7 8 4.7392 4.8289 1.8356 8 7 4.6479 2.9433 3.0049 9 6 5.5785 3.4683 4.0071 10 1 5.4312 4.5415 4.1281 11 6 7.0326 3.1791 3.5809 12 6 7.3935 1.8699 4.3257 13 6 6.6945 2.0516 5.6967 14 6 5.3640 2.7520 5.3520 15 1 4.5668 2.0143 5.2591 16 6 5.0110 3.7704 6.4379 17 7 4.7090 3.0673 7.6872 18 6 4.3647 3.7773 8.8063 19 1 4.3153 4.8556 8.7679 20 6 4.0790 3.1112 9.9902 21 7 4.1387 1.7972 10.0369 22 14 3.6086 4.0797 11.5167 23 1 3.3542 3.1414 12.6393 24 1 4.7166 4.9989 11.8807 25 1 2.3805 4.8686 11.2436 26 6 2.8682 3.9835 -0.0945 27 6 3.3023 5.4231 -0.1945 28 7 2.0316 3.4801 -0.9813 29 7 1.6351 2.2610 -0.9357 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.2578 1.1690 1.7511 36 1 4.2897 2.0467 3.0982 37 1 7.0921 3.0334 2.5024 38 1 7.6899 3.9910 3.8921 39 1 6.9923 1.0033 3.8000 40 1 8.4727 1.7816 4.4508 41 1 7.2977 2.6799 6.3519 42 1 6.5069 1.0836 6.1613 43 1 4.1404 4.3472 6.1258 44 1 5.8550 4.4423 6.5939 45 1 4.7537 2.0990 7.7217 46 1 4.3826 1.2943 9.2441 47 1 4.2597 5.4788 -0.7124 48 1 2.5552 5.9900 -0.7499 49 1 3.4058 5.8417 0.8066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482687956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:29 Heat of formation + Delta-G solvation = 13.595668 kcal Electronic energy + Delta-G solvation = -28463.356020 eV Core-core repulsion = 24618.355074 eV Total energy + Delta-G solvation = -3845.000947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -41.75210 -40.11230 -38.26346 -35.65576 -34.88110 -34.19611 -33.52113 -31.79607 -31.49257 -28.60862 -28.37389 -27.71480 -26.09548 -24.29717 -23.82143 -22.99639 -22.31471 -21.36339 -20.23096 -19.89806 -18.05316 -17.84516 -17.18282 -16.48289 -16.08604 -15.91820 -15.51002 -15.39973 -14.86791 -14.71649 -14.45085 -14.15731 -13.98317 -13.73785 -13.60526 -13.34876 -13.22102 -13.17622 -12.67328 -12.47636 -12.25090 -12.19801 -11.73593 -11.62927 -11.41740 -11.15394 -11.04413 -10.90331 -10.80673 -10.63706 -10.61912 -10.61058 -10.54040 -10.37221 -10.01322 -9.85784 -9.72728 -9.32541 -9.14007 -8.92166 -7.05242 -6.14704 -3.14420 -0.04758 0.46562 2.44210 2.70639 3.21285 3.49657 3.52219 3.52851 3.70235 3.82077 3.97721 4.18684 4.30261 4.47030 4.61172 4.62856 4.68488 4.69583 4.83943 4.88412 5.06752 5.13630 5.26025 5.27823 5.41019 5.45336 5.45996 5.47410 5.57530 5.58604 5.61095 5.62822 5.66542 5.69671 5.77040 5.87966 5.90004 5.92614 5.94577 6.07954 6.10429 6.28100 6.36615 6.42952 6.60923 6.71884 7.13660 7.77122 7.81739 8.31822 8.71728 9.18277 10.04654 10.19380 11.33879 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.002659 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.514692 B =10528.546549 C =11233.634361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.068 4.068 3 C 0.059 3.941 4 C -0.080 4.080 5 C -0.129 4.129 6 C 0.561 3.439 7 O -0.516 6.516 8 N -0.708 5.708 9 C 0.146 3.854 10 H 0.098 0.902 11 C -0.130 4.130 12 C -0.125 4.125 13 C -0.113 4.113 14 C -0.105 4.105 15 H 0.076 0.924 16 C 0.167 3.833 17 N -0.742 5.742 18 C -0.332 4.332 19 H 0.064 0.936 20 C -0.045 4.045 21 N -0.944 5.944 22 Si 1.079 2.921 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.295 1.295 26 C 0.118 3.882 27 C -0.106 4.106 28 N -0.242 5.242 29 N -0.220 5.220 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.154 0.846 36 H 0.398 0.602 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.019 0.981 44 H 0.024 0.976 45 H 0.367 0.633 46 H 0.254 0.746 47 H 0.087 0.913 48 H 0.076 0.924 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.449 -3.213 -22.014 22.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.085 4.085 4 C -0.110 4.110 5 C -0.143 4.143 6 C 0.346 3.654 7 O -0.393 6.393 8 N -0.359 5.359 9 C 0.042 3.958 10 H 0.116 0.884 11 C -0.168 4.168 12 C -0.163 4.163 13 C -0.151 4.151 14 C -0.124 4.124 15 H 0.094 0.906 16 C 0.039 3.961 17 N -0.387 5.387 18 C -0.463 4.463 19 H 0.082 0.918 20 C -0.242 4.242 21 N -0.590 5.590 22 Si 0.910 3.090 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.223 1.223 26 C -0.026 4.026 27 C -0.164 4.164 28 N -0.084 5.084 29 N -0.062 5.062 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.171 0.829 36 H 0.234 0.766 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.036 0.964 44 H 0.042 0.958 45 H 0.200 0.800 46 H 0.065 0.935 47 H 0.106 0.894 48 H 0.094 0.906 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.581 -2.000 -21.823 21.922 hybrid contribution 1.104 -0.911 -0.259 1.454 sum 0.523 -2.911 -22.082 22.279 Atomic orbital electron populations 1.21720 0.93469 1.02388 1.02985 1.20477 0.97566 0.88741 1.03932 1.22868 0.94556 0.98854 0.92209 1.22574 0.94724 0.95173 0.98483 1.21152 1.00130 0.94942 0.98093 1.17863 0.80849 0.85372 0.81286 1.90759 1.54464 1.18257 1.75800 1.46113 1.47276 1.18255 1.24241 1.21762 0.87940 0.99864 0.86263 0.88405 1.22745 0.95606 0.98441 1.00054 1.22556 1.00390 0.97011 0.96336 1.22398 0.95302 1.00898 0.96472 1.22257 0.98472 0.98333 0.93329 0.90594 1.20662 0.97141 0.92779 0.85483 1.42317 1.84336 1.05150 1.06929 1.20035 1.43756 0.91990 0.90493 0.91794 1.25773 1.00628 0.97400 1.00409 1.70898 1.51470 1.05422 1.31168 0.83249 0.75864 0.74194 0.75685 1.21001 1.22220 1.22258 1.23159 0.91350 0.98814 0.89291 1.20980 1.01820 0.87850 1.05703 1.73095 1.08983 1.05362 1.20940 1.72757 1.16945 0.97500 1.19038 0.91685 0.92606 0.91369 0.89254 0.89670 0.82892 0.76637 0.91604 0.90422 0.91956 0.91502 0.90629 0.91366 0.96362 0.95834 0.80017 0.93511 0.89411 0.90551 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.78 37.16 0.36 -0.62 16 2 C -0.07 -0.43 6.35 -27.89 -0.18 -0.61 16 3 C 0.06 0.56 6.25 -82.46 -0.52 0.04 16 4 C -0.08 -0.69 9.29 -38.78 -0.36 -1.05 16 5 C -0.13 -1.40 5.92 -104.57 -0.62 -2.02 16 6 C 0.56 6.68 7.73 -12.19 -0.09 6.59 16 7 O -0.52 -7.38 13.18 5.36 0.07 -7.31 16 8 N -0.71 -7.52 4.99 -53.57 -0.27 -7.78 16 9 C 0.15 1.81 2.90 -66.82 -0.19 1.61 16 10 H 0.10 1.40 7.10 -51.93 -0.37 1.03 16 11 C -0.13 -1.43 6.54 -25.08 -0.16 -1.60 16 12 C -0.13 -1.32 6.91 -24.70 -0.17 -1.49 16 13 C -0.11 -1.53 6.05 -25.03 -0.15 -1.68 16 14 C -0.10 -1.50 2.73 -89.50 -0.24 -1.74 16 15 H 0.08 1.07 7.62 -51.93 -0.40 0.68 16 16 C 0.17 3.25 5.31 -4.04 -0.02 3.23 16 17 N -0.74 -18.13 5.44 -59.91 -0.33 -18.46 16 18 C -0.33 -9.31 9.99 -15.06 -0.15 -9.46 16 19 H 0.06 1.78 7.83 -52.48 -0.41 1.37 16 20 C -0.04 -1.29 5.50 -17.43 -0.10 -1.38 16 21 N -0.94 -28.75 13.70 55.49 0.76 -27.99 16 22 Si 1.08 25.76 29.92 -169.99 -5.09 20.68 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.12 1.40 6.91 -82.00 -0.57 0.83 16 27 C -0.11 -1.11 8.98 36.00 0.32 -0.78 16 28 N -0.24 -3.11 11.42 33.81 0.39 -2.72 16 29 N -0.22 -2.63 11.04 33.57 0.37 -2.26 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.53 7.96 -51.93 -0.41 0.11 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.37 7.92 -51.93 -0.41 -0.04 16 35 H 0.15 0.83 6.60 -52.48 -0.35 0.48 16 36 H 0.40 3.31 6.55 -40.82 -0.27 3.04 16 37 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 1.16 7.77 -51.93 -0.40 0.75 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.02 0.47 8.02 -51.93 -0.42 0.06 16 45 H 0.37 9.04 6.36 -40.82 -0.26 8.78 16 46 H 0.25 7.54 6.78 -40.82 -0.28 7.27 16 47 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.11 1.22 5.93 -51.93 -0.31 0.91 16 LS Contribution 394.03 15.07 5.94 5.94 Total: -1.00 -33.74 394.03 -8.71 -42.45 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.72 Total: 7.59 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -2.84 Total: -10.13 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.92 Total: -59.21 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.07 Total: -7.31 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.09 Total: 20.68 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.74 -8.71 -42.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482687956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.043 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds