Wall clock time and date at job start Tue Mar 31 2020 21:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50691 * 109.47126 * 2 1 4 4 C 1.38551 * 120.01699 * 125.27823 * 3 2 1 5 5 C 1.40068 * 117.82102 * 180.25970 * 4 3 2 6 6 C 1.48142 * 121.14795 * 179.74206 * 5 4 3 7 7 O 1.21511 * 120.00050 * 173.87228 * 6 5 4 8 8 N 1.34783 * 119.99600 * 353.86610 * 6 5 4 9 9 C 1.46499 * 119.99566 * 179.97438 * 8 6 5 10 10 H 1.09007 * 110.05596 * 33.59044 * 9 8 6 11 11 C 1.54259 * 110.03406 * 272.16934 * 9 8 6 12 12 C 1.54891 * 104.19785 * 264.32670 * 11 9 8 13 13 C 1.54963 * 102.77615 * 322.08396 * 12 11 9 14 14 C 1.53873 * 110.03207 * 155.00299 * 9 8 6 15 15 H 1.09003 * 110.02765 * 359.95060 * 14 9 8 16 16 C 1.53003 * 110.03456 * 238.57374 * 14 9 8 17 17 N 1.46502 * 109.47003 * 175.68842 * 16 14 9 18 18 C 1.36933 * 119.99509 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00488 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99828 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99882 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00012 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46997 * 179.97438 * 22 20 18 24 24 H 1.48505 * 109.46926 * 299.99436 * 22 20 18 25 25 H 1.48498 * 109.47482 * 59.99364 * 22 20 18 26 26 C 1.39768 * 117.70872 * 359.47416 * 5 4 3 27 27 C 1.50695 * 120.17584 * 180.25137 * 26 5 4 28 28 N 1.31896 * 119.64865 * 0.26983 * 26 5 4 29 29 N 1.28276 * 122.33641 * 359.97438 * 28 26 5 30 30 H 1.08992 * 109.47475 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47556 * 300.00175 * 1 2 3 32 32 H 1.09005 * 109.46880 * 59.99653 * 1 2 3 33 33 H 1.09001 * 109.47037 * 239.99895 * 2 1 3 34 34 H 1.08999 * 109.46488 * 120.00512 * 2 1 3 35 35 H 1.08005 * 121.08660 * 0.02562 * 4 3 2 36 36 H 0.96994 * 120.00376 * 0.02562 * 8 6 5 37 37 H 1.08999 * 110.48709 * 23.00725 * 11 9 8 38 38 H 1.09002 * 110.48677 * 145.51688 * 11 9 8 39 39 H 1.09002 * 110.75276 * 80.37282 * 12 11 9 40 40 H 1.09000 * 110.75573 * 203.74178 * 12 11 9 41 41 H 1.08996 * 110.47699 * 279.23372 * 13 12 11 42 42 H 1.08996 * 110.52716 * 156.56587 * 13 12 11 43 43 H 1.08996 * 109.46952 * 55.68550 * 16 14 9 44 44 H 1.08996 * 109.46762 * 295.68645 * 16 14 9 45 45 H 0.96997 * 120.00015 * 0.02562 * 17 16 14 46 46 H 0.97006 * 120.00125 * 0.02562 * 21 20 18 47 47 H 1.08999 * 109.47598 * 83.70925 * 27 26 5 48 48 H 1.08993 * 109.47283 * 203.71344 * 27 26 5 49 49 H 1.09003 * 109.46726 * 323.71059 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9166 1.8432 0.9794 5 6 3.3496 3.1747 0.9388 6 6 4.2902 3.7058 1.9526 7 8 4.7392 4.8289 1.8356 8 7 4.6479 2.9433 3.0049 9 6 5.5785 3.4683 4.0071 10 1 5.4312 4.5415 4.1281 11 6 7.0326 3.1791 3.5809 12 6 7.3935 1.8699 4.3257 13 6 6.6945 2.0516 5.6967 14 6 5.3640 2.7520 5.3520 15 1 4.5668 2.0143 5.2591 16 6 5.0110 3.7704 6.4379 17 7 4.7090 3.0673 7.6872 18 6 4.3647 3.7773 8.8063 19 1 4.3153 4.8556 8.7679 20 6 4.0790 3.1112 9.9902 21 7 4.1387 1.7972 10.0369 22 14 3.6086 4.0797 11.5167 23 1 3.3542 3.1414 12.6393 24 1 4.7166 4.9989 11.8807 25 1 2.3805 4.8686 11.2436 26 6 2.8682 3.9835 -0.0945 27 6 3.3023 5.4231 -0.1945 28 7 2.0316 3.4801 -0.9813 29 7 1.6351 2.2610 -0.9357 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.2578 1.1690 1.7511 36 1 4.2897 2.0467 3.0982 37 1 7.0921 3.0334 2.5024 38 1 7.6899 3.9910 3.8921 39 1 6.9923 1.0033 3.8000 40 1 8.4727 1.7816 4.4508 41 1 7.2977 2.6799 6.3519 42 1 6.5069 1.0836 6.1613 43 1 4.1404 4.3472 6.1258 44 1 5.8550 4.4423 6.5939 45 1 4.7537 2.0990 7.7217 46 1 4.3826 1.2943 9.2441 47 1 4.2597 5.4788 -0.7124 48 1 2.5552 5.9900 -0.7499 49 1 3.4058 5.8417 0.8066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482687956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:27 Heat of formation + Delta-G solvation = -8.278327 kcal Electronic energy + Delta-G solvation = -28464.304548 eV Core-core repulsion = 24618.355074 eV Total energy + Delta-G solvation = -3845.949474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 10.17 seconds Orbital eigenvalues (eV) -42.57761 -41.08691 -39.35982 -36.74089 -36.27707 -35.17788 -34.43300 -33.27591 -32.48104 -30.06327 -29.33071 -28.61586 -26.96205 -26.03107 -24.52215 -24.37285 -23.47602 -22.24707 -21.24967 -20.97927 -19.51263 -18.79679 -18.58461 -17.54887 -16.89359 -16.81164 -16.73256 -16.33963 -16.07009 -15.72662 -15.54157 -15.41923 -15.06470 -14.95051 -14.91131 -14.65513 -14.37886 -13.95615 -13.55746 -13.41102 -13.18259 -12.89079 -12.77712 -12.72756 -12.60694 -12.53982 -12.18255 -12.01507 -11.91441 -11.86934 -11.85403 -11.83214 -11.55930 -11.46192 -11.42290 -11.26152 -10.94411 -10.66220 -10.58554 -10.19306 -9.12943 -8.41614 -5.35389 -0.85736 -0.30118 1.54186 1.57845 1.66847 1.78035 1.83736 2.38731 2.69053 2.78420 3.06322 3.21978 3.34088 3.38106 3.45204 3.58056 3.62357 3.80625 3.94673 3.98521 4.06497 4.29696 4.34307 4.36981 4.38030 4.41834 4.52361 4.54158 4.55930 4.62205 4.63971 4.68873 4.87017 4.88324 4.91873 4.95025 5.02085 5.03836 5.09018 5.15513 5.18410 5.23490 5.28021 5.39394 5.42502 5.46635 5.56368 6.27229 6.49676 6.93070 7.08133 7.50550 7.98362 8.09028 9.10780 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.002659 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.514692 B =10528.546549 C =11233.634361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.067 4.067 3 C 0.060 3.940 4 C -0.064 4.064 5 C -0.140 4.140 6 C 0.564 3.436 7 O -0.544 6.544 8 N -0.697 5.697 9 C 0.154 3.846 10 H 0.076 0.924 11 C -0.124 4.124 12 C -0.111 4.111 13 C -0.112 4.112 14 C -0.092 4.092 15 H 0.084 0.916 16 C 0.166 3.834 17 N -0.751 5.751 18 C -0.339 4.339 19 H 0.060 0.940 20 C -0.099 4.099 21 N -0.972 5.972 22 Si 1.125 2.875 23 H -0.290 1.290 24 H -0.279 1.279 25 H -0.280 1.280 26 C 0.105 3.895 27 C -0.100 4.100 28 N -0.268 5.268 29 N -0.245 5.245 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.191 0.809 36 H 0.412 0.588 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.007 0.993 44 H 0.017 0.983 45 H 0.364 0.636 46 H 0.246 0.754 47 H 0.091 0.909 48 H 0.082 0.918 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.837 -4.655 -22.454 22.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.086 4.086 4 C -0.093 4.093 5 C -0.154 4.154 6 C 0.350 3.650 7 O -0.423 6.423 8 N -0.349 5.349 9 C 0.049 3.951 10 H 0.094 0.906 11 C -0.162 4.162 12 C -0.148 4.148 13 C -0.150 4.150 14 C -0.111 4.111 15 H 0.102 0.898 16 C 0.039 3.961 17 N -0.396 5.396 18 C -0.471 4.471 19 H 0.079 0.921 20 C -0.291 4.291 21 N -0.619 5.619 22 Si 0.950 3.050 23 H -0.216 1.216 24 H -0.205 1.205 25 H -0.206 1.206 26 C -0.040 4.040 27 C -0.158 4.158 28 N -0.110 5.110 29 N -0.087 5.087 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.208 0.792 36 H 0.250 0.750 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.025 0.975 44 H 0.035 0.965 45 H 0.197 0.803 46 H 0.057 0.943 47 H 0.110 0.890 48 H 0.101 0.899 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.196 -3.439 -22.317 22.581 hybrid contribution 0.961 -0.467 -0.152 1.079 sum 0.765 -3.906 -22.469 22.819 Atomic orbital electron populations 1.21713 0.93925 1.03184 1.01718 1.20653 0.97075 0.86951 1.05902 1.23404 0.94004 0.99787 0.91376 1.22984 0.93238 0.94554 0.98572 1.21077 1.00540 0.95988 0.97812 1.17973 0.80615 0.84974 0.81443 1.90755 1.55519 1.19517 1.76475 1.45917 1.46822 1.18753 1.23364 1.21506 0.89406 0.98428 0.85727 0.90567 1.22693 0.94140 0.98749 1.00635 1.22498 1.00906 0.97367 0.94062 1.22338 0.94683 0.99958 0.98039 1.22084 0.99293 0.97179 0.92538 0.89784 1.20773 0.96187 0.93826 0.85267 1.42457 1.84218 1.05136 1.07741 1.20361 1.42719 0.92199 0.91778 0.92148 1.27128 1.00866 0.97584 1.03485 1.70995 1.53495 1.06362 1.31079 0.82661 0.76622 0.73351 0.72397 1.21607 1.20487 1.20621 1.23316 0.91571 0.99364 0.89728 1.20912 1.02234 0.87640 1.05023 1.73047 1.09895 1.06171 1.21866 1.72679 1.17816 0.97646 1.20524 0.89853 0.93498 0.93041 0.88113 0.86779 0.79156 0.74961 0.90629 0.90716 0.89784 0.90318 0.92892 0.91723 0.97460 0.96507 0.80310 0.94337 0.89032 0.89874 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.78 71.98 0.70 -0.99 16 2 C -0.07 -0.65 6.35 29.85 0.19 -0.46 16 3 C 0.06 0.99 6.25 42.62 0.27 1.26 16 4 C -0.06 -0.93 9.29 22.79 0.21 -0.72 16 5 C -0.14 -2.86 5.92 -19.83 -0.12 -2.97 16 6 C 0.56 12.71 7.73 86.87 0.67 13.38 16 7 O -0.54 -15.41 13.18 -3.75 -0.05 -15.46 16 8 N -0.70 -13.25 4.99 -441.69 -2.20 -15.45 16 9 C 0.15 3.61 2.90 45.71 0.13 3.74 16 10 H 0.08 2.16 7.10 -2.38 -0.02 2.15 16 11 C -0.12 -2.45 6.54 31.67 0.21 -2.24 16 12 C -0.11 -2.01 6.91 31.91 0.22 -1.79 16 13 C -0.11 -2.88 6.05 31.69 0.19 -2.69 16 14 C -0.09 -2.52 2.73 -10.07 -0.03 -2.55 16 15 H 0.08 2.20 7.62 -2.39 -0.02 2.18 16 16 C 0.17 6.49 5.31 86.38 0.46 6.95 16 17 N -0.75 -36.94 5.44 -343.45 -1.87 -38.81 16 18 C -0.34 -19.10 9.99 84.04 0.84 -18.26 16 19 H 0.06 3.38 7.83 -2.91 -0.02 3.35 16 20 C -0.10 -5.68 5.50 84.86 0.47 -5.22 16 21 N -0.97 -59.43 13.70 21.65 0.30 -59.14 16 22 Si 1.12 51.56 29.92 68.60 2.05 53.61 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 26 C 0.11 2.48 6.91 42.92 0.30 2.77 16 27 C -0.10 -2.14 8.98 71.23 0.64 -1.50 16 28 N -0.27 -6.91 11.42 -46.94 -0.54 -7.45 16 29 N -0.24 -5.72 11.04 -47.69 -0.53 -6.25 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.76 7.96 -2.38 -0.02 0.74 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.11 0.48 7.92 -2.39 -0.02 0.46 16 35 H 0.19 1.18 6.60 -2.91 -0.02 1.16 16 36 H 0.41 5.42 6.55 -92.71 -0.61 4.81 16 37 H 0.08 1.40 8.04 -2.39 -0.02 1.38 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.05 1.60 7.77 -2.39 -0.02 1.58 16 42 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.02 0.69 8.02 -2.39 -0.02 0.67 16 45 H 0.36 18.10 6.36 -92.71 -0.59 17.51 16 46 H 0.25 14.81 6.78 -92.70 -0.63 14.18 16 47 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.09 2.23 5.93 -2.39 -0.01 2.21 16 Total: -1.00 -74.25 394.03 2.43 -71.82 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -0.08 Total: 28.41 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 5.35 Total: -11.28 kcal Atomic # 7 Polarization: -122.26 SS G_CDS: -4.84 Total: -127.10 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.05 Total: -15.46 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.61 kcal Total: -74.25 2.43 -71.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482687956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.537 kcal (2) G-P(sol) polarization free energy of solvation -74.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.18 seconds