Wall clock time and date at job start Tue Mar 31 2020 16:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30789 * 125.72396 * 2 1 4 4 C 1.34420 * 109.32320 * 179.97438 * 3 2 1 5 5 C 1.33858 * 107.80121 * 359.97438 * 4 3 2 6 6 N 1.34404 * 125.72814 * 180.02562 * 2 1 3 7 7 C 1.46475 * 128.44050 * 0.16977 * 6 2 1 8 8 C 1.53284 * 108.69494 * 162.65157 * 7 6 2 9 9 C 1.53112 * 109.71065 * 50.76084 * 8 7 6 10 10 H 1.08997 * 109.52459 * 50.07219 * 9 8 7 11 11 C 1.50698 * 109.49560 * 170.14890 * 9 8 7 12 12 O 1.21281 * 120.00386 * 359.84431 * 11 9 8 13 13 N 1.34780 * 120.00276 * 179.84009 * 11 9 8 14 14 C 1.46494 * 120.00264 * 180.02562 * 13 11 9 15 15 C 1.53006 * 109.47068 * 184.98355 * 14 13 11 16 16 N 1.46497 * 112.84951 * 293.58934 * 15 14 13 17 17 C 1.36937 * 120.00294 * 305.75449 * 16 15 14 18 18 H 1.07998 * 119.99667 * 354.14198 * 17 16 15 19 19 C 1.38809 * 120.00066 * 174.14600 * 17 16 15 20 20 N 1.31624 * 120.00199 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00109 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46699 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46945 * 119.99811 * 21 19 17 24 24 H 1.48501 * 109.47146 * 240.00001 * 21 19 17 25 25 C 1.53778 * 113.61180 * 64.78582 * 15 14 13 26 26 C 1.53784 * 87.07787 * 139.97934 * 25 15 14 27 27 C 1.53781 * 87.08392 * 334.56789 * 26 25 15 28 28 C 1.50707 * 128.68539 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.46595 * 269.99456 * 1 2 3 30 30 H 1.09003 * 109.47054 * 29.99537 * 1 2 3 31 31 H 1.08996 * 109.46800 * 149.99868 * 1 2 3 32 32 H 1.08005 * 126.09996 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.59981 * 282.39638 * 7 6 2 34 34 H 1.08996 * 109.60425 * 42.87479 * 7 6 2 35 35 H 1.09000 * 109.42330 * 290.68930 * 8 7 6 36 36 H 1.08998 * 109.42917 * 170.84260 * 8 7 6 37 37 H 0.97003 * 119.99458 * 0.02562 * 13 11 9 38 38 H 1.09003 * 109.46931 * 64.98443 * 14 13 11 39 39 H 1.08997 * 109.47334 * 304.98744 * 14 13 11 40 40 H 0.97001 * 119.99688 * 125.74671 * 16 15 14 41 41 H 0.97002 * 120.00198 * 179.97438 * 20 19 17 42 42 H 1.08997 * 113.61293 * 25.43676 * 25 15 14 43 43 H 1.08988 * 113.61707 * 254.52711 * 25 15 14 44 44 H 1.09001 * 113.61119 * 89.11710 * 26 25 15 45 45 H 1.08996 * 113.61768 * 220.01750 * 26 25 15 46 46 H 1.08998 * 113.61386 * 139.98114 * 27 26 25 47 47 H 1.09001 * 113.61401 * 270.88413 * 27 26 25 48 48 H 1.09002 * 109.74071 * 44.61634 * 28 5 4 49 49 H 1.08997 * 109.78787 * 283.91560 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6823 0.0006 5 6 3.5929 -0.6559 0.0015 6 7 2.2918 -1.0911 -0.0005 7 6 1.8923 -2.5003 -0.0045 8 6 3.0926 -3.3501 -0.4364 9 6 4.3189 -2.9745 0.3999 10 1 4.0558 -2.9858 1.4576 11 6 5.4240 -3.9671 0.1461 12 8 5.2481 -4.8864 -0.6252 13 7 6.6080 -3.8333 0.7760 14 6 7.6824 -4.7979 0.5288 15 6 8.8635 -4.4937 1.4527 16 7 9.5075 -3.2131 1.1498 17 6 9.9505 -2.9528 -0.1195 18 1 9.9117 -3.7246 -0.8739 19 6 10.4495 -1.6968 -0.4364 20 7 10.4964 -0.7560 0.4829 21 14 11.0545 -1.3418 -2.1678 22 1 10.8960 -2.5571 -3.0063 23 1 10.2612 -0.2303 -2.7511 24 1 12.4879 -0.9562 -2.1219 25 6 8.5436 -4.6847 2.9446 26 6 9.9466 -5.2985 3.0861 27 6 9.8513 -5.6636 1.5953 28 6 4.7919 -1.5689 0.0029 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 4.4170 1.3397 0.0011 33 1 1.5780 -2.7941 0.9970 34 1 1.0702 -2.6453 -0.7054 35 1 3.3036 -3.1701 -1.4906 36 1 2.8619 -4.4051 -0.2886 37 1 6.7485 -3.0982 1.3932 38 1 8.0051 -4.7241 -0.5098 39 1 7.3179 -5.8062 0.7252 40 1 9.6199 -2.5496 1.8484 41 1 10.8455 0.1215 0.2615 42 1 7.7364 -5.3931 3.1309 43 1 8.4200 -3.7481 3.4881 44 1 10.7231 -4.5663 3.3075 45 1 9.9796 -6.1649 3.7465 46 1 10.7834 -5.5171 1.0495 47 1 9.4016 -6.6395 1.4126 48 1 5.5268 -1.2104 0.7238 49 1 5.2356 -1.5968 -0.9922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501999739.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:35 Heat of formation + Delta-G solvation = 45.164447 kcal Electronic energy + Delta-G solvation = -29278.948557 eV Core-core repulsion = 25435.316536 eV Total energy + Delta-G solvation = -3843.632022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.42601 -39.82171 -38.66062 -36.26910 -34.08120 -33.44683 -33.27305 -31.33557 -30.12002 -29.81432 -27.71447 -26.32402 -25.28939 -24.36174 -23.96940 -22.82176 -21.53195 -20.71530 -20.02191 -19.03329 -18.27582 -17.29921 -16.87872 -16.79730 -16.03811 -15.65445 -15.27450 -14.97065 -14.47623 -14.18911 -14.14745 -14.02346 -13.79976 -13.72243 -13.47381 -13.20474 -13.10140 -13.03449 -12.67693 -12.53263 -12.08527 -11.94724 -11.88268 -11.77536 -11.38009 -11.25120 -11.14175 -11.06174 -10.89251 -10.43092 -10.28175 -10.11674 -9.99017 -9.75092 -9.54832 -9.54671 -9.49971 -8.92741 -8.55340 -8.18781 -7.09331 -5.87276 -3.17548 2.00260 2.66681 2.86380 3.13306 3.38223 3.45787 3.46818 3.47644 4.25286 4.37728 4.42631 4.49363 4.52175 4.69086 4.88399 4.93854 5.01343 5.14072 5.17407 5.18995 5.22894 5.28812 5.34546 5.40715 5.42498 5.49451 5.58098 5.59789 5.65150 5.74264 5.86747 5.91261 5.97649 5.99435 6.08247 6.14664 6.27948 6.33105 6.37199 6.46788 6.66654 6.78090 6.82864 6.92167 7.00077 7.18072 7.66330 7.90197 8.08819 8.31082 8.52961 9.43006 9.95570 10.31072 11.34427 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.011242 B = 0.003555 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.136748 B = 7874.596700 C = 9300.133392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.199 3.801 3 N -0.494 5.494 4 C -0.019 4.019 5 C -0.016 4.016 6 N -0.454 5.454 7 C 0.104 3.896 8 C -0.113 4.113 9 C -0.109 4.109 10 H 0.098 0.902 11 C 0.515 3.485 12 O -0.553 6.553 13 N -0.699 5.699 14 C 0.124 3.876 15 C 0.176 3.824 16 N -0.699 5.699 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.005 4.005 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C -0.145 4.145 26 C -0.130 4.130 27 C -0.156 4.156 28 C -0.037 4.037 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.172 0.828 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.403 0.597 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.387 0.613 41 H 0.255 0.745 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.099 0.901 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.960 -5.216 4.084 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.063 4.063 3 N -0.213 5.213 4 C -0.166 4.166 5 C -0.130 4.130 6 N -0.139 5.139 7 C -0.018 4.018 8 C -0.151 4.151 9 C -0.131 4.131 10 H 0.116 0.884 11 C 0.300 3.700 12 O -0.432 6.432 13 N -0.348 5.348 14 C -0.002 4.002 15 C 0.082 3.918 16 N -0.339 5.339 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.202 4.202 20 N -0.576 5.576 21 Si 0.733 3.267 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.183 4.183 26 C -0.168 4.168 27 C -0.197 4.197 28 C -0.075 4.075 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.189 0.811 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.238 0.762 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.221 0.779 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.117 0.883 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.360 -5.170 3.349 18.420 hybrid contribution 0.949 0.051 -0.473 1.062 sum -16.410 -5.118 2.876 17.429 Atomic orbital electron populations 1.20126 0.85175 1.03725 1.03247 1.23070 0.95498 0.81405 1.06334 1.70441 1.02062 1.28082 1.20752 1.21883 0.94742 0.92066 1.07957 1.21045 0.85204 0.95389 1.11376 1.45279 1.06344 1.07133 1.55095 1.22020 0.98860 0.77859 1.03042 1.21673 0.91922 1.00458 1.01019 1.21398 0.94810 0.94947 1.01944 0.88420 1.20231 0.83458 0.85659 0.80611 1.90667 1.81931 1.34197 1.36446 1.45779 1.12539 1.30870 1.45604 1.21748 0.86733 0.90375 1.01328 1.20797 0.90887 0.88834 0.91240 1.42101 1.68794 1.13015 1.10036 1.19122 1.34096 0.95705 0.87887 0.91153 1.24699 1.01975 0.95991 0.97517 1.69656 1.51814 1.03792 1.32360 0.86206 0.78183 0.77926 0.84422 1.20538 1.21764 1.21866 1.23182 0.97283 1.00705 0.97125 1.22643 0.97343 0.99975 0.96793 1.23450 1.01558 0.98252 0.96453 1.20216 0.93153 0.89866 1.04275 0.90386 0.89337 0.91132 0.81098 0.89712 0.88952 0.90115 0.88454 0.76220 0.91363 0.92523 0.77850 0.93466 0.90514 0.91647 0.90116 0.92733 0.90889 0.91424 0.88300 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.24 36.01 0.37 -0.13 16 2 C 0.20 2.46 7.94 -155.75 -1.24 1.22 16 3 N -0.49 -7.52 11.27 -11.02 -0.12 -7.64 16 4 C -0.02 -0.29 11.84 -17.96 -0.21 -0.50 16 5 C -0.02 -0.22 6.57 -81.73 -0.54 -0.76 16 6 N -0.45 -5.33 3.13 -109.43 -0.34 -5.67 16 7 C 0.10 0.88 6.68 -3.91 -0.03 0.86 16 8 C -0.11 -1.17 4.66 -26.53 -0.12 -1.29 16 9 C -0.11 -1.29 2.55 -91.44 -0.23 -1.53 16 10 H 0.10 1.00 8.12 -51.93 -0.42 0.58 16 11 C 0.52 7.88 7.13 -10.98 -0.08 7.80 16 12 O -0.55 -10.21 15.81 5.56 0.09 -10.12 16 13 N -0.70 -10.95 5.32 -60.29 -0.32 -11.27 16 14 C 0.12 2.15 4.92 -4.04 -0.02 2.13 16 15 C 0.18 3.07 0.81 -131.01 -0.11 2.96 16 16 N -0.70 -15.30 5.23 -46.48 -0.24 -15.54 16 17 C -0.24 -5.99 9.28 -15.06 -0.14 -6.13 16 18 H 0.07 1.80 7.26 -52.49 -0.38 1.42 16 19 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 20 N -0.93 -26.05 13.07 55.49 0.73 -25.33 16 21 Si 0.90 21.69 29.55 -169.99 -5.02 16.67 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 C -0.14 -2.11 7.15 -25.92 -0.19 -2.30 16 26 C -0.13 -1.93 7.99 -25.92 -0.21 -2.14 16 27 C -0.16 -2.56 7.40 -25.92 -0.19 -2.75 16 28 C -0.04 -0.47 5.44 -27.60 -0.15 -0.62 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.40 7.59 -51.93 -0.39 0.01 16 32 H 0.17 2.32 8.06 -52.48 -0.42 1.90 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.59 7.72 -51.93 -0.40 0.19 16 35 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 36 H 0.10 0.97 7.77 -51.93 -0.40 0.57 16 37 H 0.40 6.05 8.14 -40.82 -0.33 5.71 16 38 H 0.07 1.39 7.20 -51.93 -0.37 1.02 16 39 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 40 H 0.39 9.10 7.84 -40.82 -0.32 8.78 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 43 H 0.06 0.96 8.10 -51.94 -0.42 0.53 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 47 H 0.07 0.98 8.03 -51.93 -0.42 0.57 16 48 H 0.10 1.27 7.95 -51.93 -0.41 0.86 16 49 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -31.54 394.08 -10.53 -42.07 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -8.05 Total: 14.31 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.17 Total: -3.42 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -0.31 Total: -65.44 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.54 -10.53 -42.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501999739.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.238 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds