Wall clock time and date at job start Tue Mar 31 2020 16:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30789 * 125.72396 * 2 1 4 4 C 1.34420 * 109.32320 * 179.97438 * 3 2 1 5 5 C 1.33858 * 107.80121 * 359.97438 * 4 3 2 6 6 N 1.34404 * 125.72814 * 180.02562 * 2 1 3 7 7 C 1.46475 * 128.44050 * 0.16977 * 6 2 1 8 8 C 1.53284 * 108.69494 * 162.65157 * 7 6 2 9 9 C 1.53112 * 109.71065 * 50.76084 * 8 7 6 10 10 H 1.08997 * 109.52459 * 50.07219 * 9 8 7 11 11 C 1.50698 * 109.49560 * 170.14890 * 9 8 7 12 12 O 1.21281 * 120.00386 * 359.84431 * 11 9 8 13 13 N 1.34780 * 120.00276 * 179.84009 * 11 9 8 14 14 C 1.46494 * 120.00264 * 180.02562 * 13 11 9 15 15 C 1.53006 * 109.47068 * 184.98355 * 14 13 11 16 16 N 1.46497 * 112.84951 * 293.58934 * 15 14 13 17 17 C 1.36937 * 120.00294 * 305.75449 * 16 15 14 18 18 H 1.07998 * 119.99667 * 354.14198 * 17 16 15 19 19 C 1.38809 * 120.00066 * 174.14600 * 17 16 15 20 20 N 1.31624 * 120.00199 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00109 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46699 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46945 * 119.99811 * 21 19 17 24 24 H 1.48501 * 109.47146 * 240.00001 * 21 19 17 25 25 C 1.53778 * 113.61180 * 64.78582 * 15 14 13 26 26 C 1.53784 * 87.07787 * 139.97934 * 25 15 14 27 27 C 1.53781 * 87.08392 * 334.56789 * 26 25 15 28 28 C 1.50707 * 128.68539 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.46595 * 269.99456 * 1 2 3 30 30 H 1.09003 * 109.47054 * 29.99537 * 1 2 3 31 31 H 1.08996 * 109.46800 * 149.99868 * 1 2 3 32 32 H 1.08005 * 126.09996 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.59981 * 282.39638 * 7 6 2 34 34 H 1.08996 * 109.60425 * 42.87479 * 7 6 2 35 35 H 1.09000 * 109.42330 * 290.68930 * 8 7 6 36 36 H 1.08998 * 109.42917 * 170.84260 * 8 7 6 37 37 H 0.97003 * 119.99458 * 0.02562 * 13 11 9 38 38 H 1.09003 * 109.46931 * 64.98443 * 14 13 11 39 39 H 1.08997 * 109.47334 * 304.98744 * 14 13 11 40 40 H 0.97001 * 119.99688 * 125.74671 * 16 15 14 41 41 H 0.97002 * 120.00198 * 179.97438 * 20 19 17 42 42 H 1.08997 * 113.61293 * 25.43676 * 25 15 14 43 43 H 1.08988 * 113.61707 * 254.52711 * 25 15 14 44 44 H 1.09001 * 113.61119 * 89.11710 * 26 25 15 45 45 H 1.08996 * 113.61768 * 220.01750 * 26 25 15 46 46 H 1.08998 * 113.61386 * 139.98114 * 27 26 25 47 47 H 1.09001 * 113.61401 * 270.88413 * 27 26 25 48 48 H 1.09002 * 109.74071 * 44.61634 * 28 5 4 49 49 H 1.08997 * 109.78787 * 283.91560 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6823 0.0006 5 6 3.5929 -0.6559 0.0015 6 7 2.2918 -1.0911 -0.0005 7 6 1.8923 -2.5003 -0.0045 8 6 3.0926 -3.3501 -0.4364 9 6 4.3189 -2.9745 0.3999 10 1 4.0558 -2.9858 1.4576 11 6 5.4240 -3.9671 0.1461 12 8 5.2481 -4.8864 -0.6252 13 7 6.6080 -3.8333 0.7760 14 6 7.6824 -4.7979 0.5288 15 6 8.8635 -4.4937 1.4527 16 7 9.5075 -3.2131 1.1498 17 6 9.9505 -2.9528 -0.1195 18 1 9.9117 -3.7246 -0.8739 19 6 10.4495 -1.6968 -0.4364 20 7 10.4964 -0.7560 0.4829 21 14 11.0545 -1.3418 -2.1678 22 1 10.8960 -2.5571 -3.0063 23 1 10.2612 -0.2303 -2.7511 24 1 12.4879 -0.9562 -2.1219 25 6 8.5436 -4.6847 2.9446 26 6 9.9466 -5.2985 3.0861 27 6 9.8513 -5.6636 1.5953 28 6 4.7919 -1.5689 0.0029 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 4.4170 1.3397 0.0011 33 1 1.5780 -2.7941 0.9970 34 1 1.0702 -2.6453 -0.7054 35 1 3.3036 -3.1701 -1.4906 36 1 2.8619 -4.4051 -0.2886 37 1 6.7485 -3.0982 1.3932 38 1 8.0051 -4.7241 -0.5098 39 1 7.3179 -5.8062 0.7252 40 1 9.6199 -2.5496 1.8484 41 1 10.8455 0.1215 0.2615 42 1 7.7364 -5.3931 3.1309 43 1 8.4200 -3.7481 3.4881 44 1 10.7231 -4.5663 3.3075 45 1 9.9796 -6.1649 3.7465 46 1 10.7834 -5.5171 1.0495 47 1 9.4016 -6.6395 1.4126 48 1 5.5268 -1.2104 0.7238 49 1 5.2356 -1.5968 -0.9922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501999739.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:34 Heat of formation + Delta-G solvation = 25.502194 kcal Electronic energy + Delta-G solvation = -29279.801176 eV Core-core repulsion = 25435.316536 eV Total energy + Delta-G solvation = -3844.484641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.38351 -41.10733 -39.99184 -37.27252 -35.40848 -35.18940 -34.35871 -32.23801 -31.88827 -30.72052 -28.98038 -27.35526 -26.65852 -25.77908 -25.28534 -23.93243 -22.81426 -21.64221 -21.23574 -19.98370 -19.68323 -19.14553 -18.14034 -17.72823 -17.08396 -16.93529 -16.54889 -16.31443 -15.92017 -15.73697 -15.11756 -15.03585 -14.99946 -14.87797 -14.82901 -14.54770 -14.17009 -13.95476 -13.80085 -13.47971 -13.14137 -13.09698 -12.96378 -12.94940 -12.83897 -12.79150 -12.63518 -12.19183 -12.14447 -12.07452 -11.97285 -11.55812 -11.45847 -11.10391 -10.92707 -10.87211 -10.64441 -10.46350 -9.92551 -9.20194 -8.97339 -7.93611 -5.19968 1.04005 1.42752 1.46549 1.52637 1.61788 1.82066 2.09742 2.27454 2.54222 3.34141 3.40101 3.53366 3.56975 3.60495 3.75093 3.77524 3.82445 3.97873 4.01520 4.09586 4.15060 4.25476 4.26613 4.32426 4.45701 4.56305 4.62790 4.68508 4.71635 4.77372 4.85103 4.86581 4.90325 4.92263 4.95802 5.01236 5.08291 5.09635 5.13658 5.32054 5.38870 5.43106 5.52167 5.64547 5.71002 5.74619 6.30516 6.32324 6.63189 7.10211 7.26928 7.37657 8.10903 8.34812 9.28627 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.011242 B = 0.003555 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.136748 B = 7874.596700 C = 9300.133392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.203 3.797 3 N -0.535 5.535 4 C -0.046 4.046 5 C -0.023 4.023 6 N -0.452 5.452 7 C 0.104 3.896 8 C -0.109 4.109 9 C -0.098 4.098 10 H 0.123 0.877 11 C 0.515 3.485 12 O -0.585 6.585 13 N -0.698 5.698 14 C 0.132 3.868 15 C 0.161 3.839 16 N -0.704 5.704 17 C -0.219 4.219 18 H 0.064 0.936 19 C -0.059 4.059 20 N -0.958 5.958 21 Si 0.949 3.051 22 H -0.275 1.275 23 H -0.298 1.298 24 H -0.295 1.295 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.155 4.155 28 C -0.029 4.029 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.166 0.834 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.407 0.593 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.378 0.622 41 H 0.249 0.751 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.084 0.916 46 H 0.044 0.956 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.572 -7.219 5.327 21.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.060 4.060 3 N -0.256 5.256 4 C -0.193 4.193 5 C -0.137 4.137 6 N -0.136 5.136 7 C -0.016 4.016 8 C -0.147 4.147 9 C -0.119 4.119 10 H 0.141 0.859 11 C 0.302 3.698 12 O -0.466 6.466 13 N -0.347 5.347 14 C 0.006 3.994 15 C 0.069 3.931 16 N -0.344 5.344 17 C -0.351 4.351 18 H 0.082 0.918 19 C -0.252 4.252 20 N -0.609 5.609 21 Si 0.780 3.220 22 H -0.200 1.200 23 H -0.225 1.225 24 H -0.223 1.223 25 C -0.165 4.165 26 C -0.160 4.160 27 C -0.196 4.196 28 C -0.068 4.068 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.184 0.816 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.242 0.758 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.211 0.789 41 H 0.058 0.942 42 H 0.122 0.878 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.103 0.897 46 H 0.063 0.937 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.985 -7.227 4.598 21.743 hybrid contribution 1.725 0.572 -0.875 2.017 sum -18.261 -6.655 3.723 19.789 Atomic orbital electron populations 1.20348 0.81839 1.05163 1.04801 1.23923 0.97191 0.80828 1.04010 1.70410 1.02384 1.29981 1.22799 1.22007 0.95069 0.92959 1.09262 1.20952 0.86187 0.94932 1.11668 1.45478 1.05412 1.08438 1.54303 1.22311 0.98428 0.75359 1.05503 1.21639 0.92014 1.01505 0.99503 1.21373 0.94046 0.92720 1.03760 0.85866 1.20798 0.83782 0.85658 0.79569 1.90651 1.82509 1.35766 1.37647 1.45791 1.12420 1.30708 1.45754 1.21562 0.87164 0.91625 0.99016 1.21092 0.91014 0.87270 0.93705 1.42131 1.69116 1.14571 1.08541 1.19261 1.31844 0.94988 0.88975 0.91827 1.25212 1.03723 0.96409 0.99902 1.69757 1.53808 1.03805 1.33486 0.85438 0.77269 0.77448 0.81826 1.20024 1.22511 1.22275 1.23125 0.97985 1.01407 0.93958 1.22577 0.96885 1.00562 0.96011 1.23453 0.99881 0.98797 0.97441 1.20065 0.93094 0.90781 1.02877 0.88632 0.89286 0.88319 0.81619 0.86886 0.86071 0.92163 0.87433 0.75757 0.95078 0.90915 0.78871 0.94210 0.87758 0.91555 0.92064 0.89720 0.93668 0.88930 0.88733 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.24 71.24 0.73 -0.05 16 2 C 0.20 4.64 7.94 138.25 1.10 5.74 16 3 N -0.54 -16.26 11.27 -188.78 -2.13 -18.39 16 4 C -0.05 -1.41 11.84 83.30 0.99 -0.43 16 5 C -0.02 -0.60 6.57 40.73 0.27 -0.34 16 6 N -0.45 -9.66 3.13 -500.13 -1.57 -11.23 16 7 C 0.10 1.38 6.68 86.48 0.58 1.96 16 8 C -0.11 -2.01 4.66 30.73 0.14 -1.87 16 9 C -0.10 -2.16 2.55 -11.32 -0.03 -2.19 16 10 H 0.12 2.15 8.12 -2.39 -0.02 2.13 16 11 C 0.52 15.29 7.13 87.66 0.63 15.91 16 12 O -0.58 -21.15 15.81 -3.03 -0.05 -21.20 16 13 N -0.70 -21.34 5.32 -463.06 -2.46 -23.81 16 14 C 0.13 4.50 4.92 86.38 0.42 4.93 16 15 C 0.16 5.46 0.81 4.13 0.00 5.47 16 16 N -0.70 -31.14 5.23 -300.97 -1.57 -32.71 16 17 C -0.22 -11.26 9.28 84.03 0.78 -10.48 16 18 H 0.06 3.33 7.26 -2.91 -0.02 3.31 16 19 C -0.06 -3.24 5.50 84.86 0.47 -2.78 16 20 N -0.96 -55.17 13.07 21.65 0.28 -54.89 16 21 Si 0.95 45.73 29.55 68.60 2.03 47.75 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 23 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 25 C -0.13 -3.36 7.15 31.12 0.22 -3.14 16 26 C -0.12 -3.36 7.99 31.12 0.25 -3.11 16 27 C -0.16 -4.86 7.40 31.12 0.23 -4.63 16 28 C -0.03 -0.77 5.44 30.03 0.16 -0.60 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 0.66 7.59 -2.39 -0.02 0.65 16 32 H 0.17 4.89 8.06 -2.91 -0.02 4.86 16 33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.12 0.98 7.72 -2.39 -0.02 0.96 16 35 H 0.06 1.38 8.11 -2.39 -0.02 1.36 16 36 H 0.11 1.83 7.77 -2.39 -0.02 1.81 16 37 H 0.41 11.92 8.14 -92.71 -0.75 11.16 16 38 H 0.03 1.28 7.20 -2.39 -0.02 1.27 16 39 H 0.07 2.25 8.04 -2.39 -0.02 2.23 16 40 H 0.38 18.04 7.84 -92.71 -0.73 17.32 16 41 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 42 H 0.10 2.25 8.10 -2.39 -0.02 2.23 16 43 H 0.07 1.78 8.10 -2.39 -0.02 1.77 16 44 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.09 2.44 8.03 -2.39 -0.02 2.42 16 48 H 0.09 2.50 7.95 -2.39 -0.02 2.48 16 49 H 0.07 2.05 8.11 -2.39 -0.02 2.03 16 Total: -1.00 -70.94 394.08 0.95 -69.99 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: -0.52 Total: 40.09 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 6.94 Total: 4.39 kcal Atomic # 7 Polarization: -133.58 SS G_CDS: -7.45 Total: -141.03 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.05 Total: -21.20 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -70.94 0.95 -69.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501999739.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.497 kcal (2) G-P(sol) polarization free energy of solvation -70.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds