Wall clock time and date at job start Tue Mar 31 2020 19:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30500 * 125.64358 * 2 1 4 4 C 1.34133 * 109.25550 * 179.97438 * 3 2 1 5 5 C 1.34677 * 108.01794 * 359.73211 * 4 3 2 6 6 N 1.35041 * 125.65557 * 179.97438 * 2 1 3 7 7 C 1.46503 * 126.39242 * 0.03569 * 6 2 1 8 8 C 1.50696 * 109.47015 * 85.00417 * 7 6 2 9 9 O 1.21283 * 120.00240 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00012 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00161 * 179.97438 * 10 8 7 12 12 C 1.53004 * 115.55304 * 179.97438 * 11 10 8 13 13 C 1.53050 * 109.45376 * 39.42245 * 12 11 10 14 14 C 1.53192 * 109.30905 * 181.37040 * 13 12 11 15 15 N 1.46924 * 108.77591 * 305.36282 * 14 13 12 16 16 C 1.36939 * 120.62993 * 233.58522 * 15 14 13 17 17 H 1.08002 * 119.99754 * 151.83452 * 16 15 14 18 18 C 1.38804 * 119.99958 * 331.83412 * 16 15 14 19 19 N 1.31622 * 120.00247 * 343.08098 * 18 16 15 20 20 Si 1.86810 * 119.99877 * 163.08052 * 18 16 15 21 21 H 1.48493 * 109.47005 * 90.00021 * 20 18 16 22 22 H 1.48501 * 109.47040 * 209.99959 * 20 18 16 23 23 H 1.48500 * 109.46752 * 329.99813 * 20 18 16 24 24 C 1.46927 * 118.74101 * 53.86337 * 15 14 13 25 25 C 1.53032 * 109.44921 * 159.47781 * 12 11 10 26 26 C 1.52998 * 117.50213 * 325.67095 * 11 10 8 27 27 C 1.53006 * 117.49848 * 34.33328 * 11 10 8 28 28 H 1.09002 * 109.46901 * 270.03455 * 1 2 3 29 29 H 1.08997 * 109.47352 * 30.04224 * 1 2 3 30 30 H 1.09004 * 109.46840 * 150.04066 * 1 2 3 31 31 H 1.07991 * 125.99450 * 180.02562 * 4 3 2 32 32 H 1.07999 * 126.59328 * 180.28493 * 5 4 3 33 33 H 1.08993 * 109.47200 * 325.00028 * 7 6 2 34 34 H 1.09004 * 109.46738 * 204.99544 * 7 6 2 35 35 H 0.97000 * 120.00186 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.46188 * 279.45087 * 12 11 10 37 37 H 1.08996 * 109.50047 * 61.41906 * 13 12 11 38 38 H 1.08996 * 109.52136 * 301.33822 * 13 12 11 39 39 H 1.09001 * 109.58625 * 185.57597 * 14 13 12 40 40 H 1.08998 * 109.58584 * 65.15378 * 14 13 12 41 41 H 0.97001 * 120.00021 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.58724 * 65.92301 * 24 15 14 43 43 H 1.08989 * 109.58969 * 186.35241 * 24 15 14 44 44 H 1.09004 * 109.50458 * 298.57809 * 25 12 11 45 45 H 1.08998 * 109.49939 * 58.64335 * 25 12 11 46 46 H 1.08996 * 117.50362 * 214.99940 * 26 11 10 47 47 H 1.09007 * 117.49748 * 0.02562 * 26 11 10 48 48 H 1.09001 * 117.49743 * 359.97013 * 27 11 10 49 49 H 1.08993 * 117.50052 * 144.97135 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6821 0.0006 5 6 3.5926 -0.6641 0.0069 6 7 2.2942 -1.0973 0.0005 7 6 1.8426 -2.4910 0.0004 8 6 1.5708 -2.9308 -1.4151 9 8 1.7374 -2.1562 -2.3334 10 7 1.1426 -4.1849 -1.6606 11 6 0.8778 -4.6124 -3.0367 12 6 0.3968 -6.0558 -3.1984 13 6 -0.5765 -6.3984 -2.0680 14 6 -1.0295 -7.8545 -2.2135 15 7 -1.5797 -8.0461 -3.5623 16 6 -2.8320 -8.5720 -3.7367 17 1 -3.4106 -8.3106 -4.6104 18 6 -3.3577 -9.4411 -2.7907 19 7 -2.5630 -10.0210 -1.9162 20 14 -5.1930 -9.7878 -2.7586 21 1 -5.4922 -10.9516 -3.6310 22 1 -5.6154 -10.0904 -1.3674 23 1 -5.9303 -8.5969 -3.2518 24 6 -0.7585 -7.6683 -4.7205 25 6 -0.3106 -6.2091 -4.5467 26 6 0.3189 -3.5685 -4.0056 27 6 1.7699 -4.0377 -4.1390 28 1 -0.3633 0.0006 1.0277 29 1 -0.3634 0.8896 -0.5145 30 1 -0.3633 -0.8904 -0.5132 31 1 4.4097 1.3412 0.0011 32 1 4.4777 -1.2830 0.0133 33 1 0.9296 -2.5771 0.5893 34 1 2.6166 -3.1236 0.4351 35 1 1.0098 -4.8046 -0.9263 36 1 1.2521 -6.7303 -3.1581 37 1 -1.4437 -5.7404 -2.1226 38 1 -0.0795 -6.2662 -1.1069 39 1 -1.7968 -8.0744 -1.4712 40 1 -0.1773 -8.5185 -2.0687 41 1 -2.9304 -10.6287 -1.2554 42 1 0.1154 -8.3174 -4.7761 43 1 -1.3468 -7.7653 -5.6328 44 1 -1.1804 -5.5529 -4.5781 45 1 0.3758 -5.9419 -5.3501 46 1 -0.3918 -3.9098 -4.7581 47 1 0.1486 -2.5635 -3.6193 48 1 2.5535 -3.3413 -3.8404 49 1 2.0140 -4.6879 -4.9790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508162084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:06 Heat of formation + Delta-G solvation = 83.907825 kcal Electronic energy + Delta-G solvation = -29206.626156 eV Core-core repulsion = 25364.674173 eV Total energy + Delta-G solvation = -3841.951983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -42.33833 -40.60260 -38.30248 -36.07722 -34.27377 -33.32178 -32.63622 -31.91319 -30.57434 -29.57111 -28.25163 -26.89809 -25.64167 -23.37902 -22.37960 -22.21816 -21.64419 -21.29394 -19.99889 -19.88043 -18.78209 -18.04544 -17.31042 -16.76976 -15.78865 -15.70936 -15.48621 -14.89251 -14.47748 -14.46539 -14.02649 -13.93519 -13.85203 -13.60514 -13.43153 -13.20542 -12.99083 -12.83095 -12.79587 -12.57716 -12.54498 -12.49170 -11.51257 -11.42400 -11.22656 -11.03059 -10.81531 -10.73061 -10.52036 -10.38596 -10.24716 -10.13899 -10.11130 -9.93615 -9.71071 -9.53618 -9.43810 -8.64199 -8.52832 -8.48501 -6.73277 -5.85740 -3.28002 1.75299 2.19458 2.35146 2.96294 3.03672 3.32497 3.39976 3.42370 3.99101 4.22469 4.27391 4.31634 4.44254 4.55862 4.56434 4.80045 4.94334 5.08693 5.13998 5.25395 5.27143 5.30029 5.37972 5.41646 5.56608 5.60652 5.62492 5.68792 5.85671 5.92417 6.02006 6.06900 6.08181 6.22290 6.37005 6.40128 6.43887 6.48929 6.57848 6.58960 6.65427 6.74913 6.91299 6.92744 7.23647 7.29592 7.55459 7.73714 7.90665 7.95339 8.38756 9.15073 9.78284 10.34860 11.22825 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.019998 B = 0.002575 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.825727 B =10873.211391 C =11472.106552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.221 3.779 3 N -0.493 5.493 4 C -0.027 4.027 5 C -0.052 4.052 6 N -0.441 5.441 7 C 0.083 3.917 8 C 0.492 3.508 9 O -0.515 6.515 10 N -0.685 5.685 11 C 0.105 3.895 12 C -0.041 4.041 13 C -0.132 4.132 14 C 0.171 3.829 15 N -0.591 5.591 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.904 5.904 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.145 3.855 25 C -0.126 4.126 26 C -0.176 4.176 27 C -0.178 4.178 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.407 0.593 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.017 0.983 41 H 0.254 0.746 42 H 0.018 0.982 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.101 0.899 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.539 13.897 5.175 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.041 4.041 3 N -0.212 5.212 4 C -0.174 4.174 5 C -0.184 4.184 6 N -0.124 5.124 7 C -0.044 4.044 8 C 0.276 3.724 9 O -0.390 6.390 10 N -0.336 5.336 11 C 0.018 3.982 12 C -0.060 4.060 13 C -0.172 4.172 14 C 0.045 3.955 15 N -0.314 5.314 16 C -0.381 4.381 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.018 3.982 25 C -0.165 4.165 26 C -0.214 4.214 27 C -0.216 4.216 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.186 0.814 32 H 0.189 0.811 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.244 0.756 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.106 0.894 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.289 15.000 4.661 18.777 hybrid contribution -0.426 -1.489 0.456 1.614 sum 9.863 13.511 5.117 17.493 Atomic orbital electron populations 1.20193 0.85103 1.04309 1.03234 1.23248 0.95612 0.81103 1.04170 1.70250 1.02312 1.28048 1.20625 1.22220 0.94775 0.92676 1.07733 1.22619 0.86660 0.96954 1.12179 1.44811 1.06785 1.05778 1.55034 1.21695 1.04346 0.82001 0.96371 1.20670 0.78184 0.82530 0.91013 1.90760 1.50563 1.52835 1.44884 1.45352 1.66639 1.12619 1.09002 1.21033 1.04284 0.94760 0.78113 1.20675 0.98122 0.89566 0.97640 1.22217 0.97831 1.02144 0.94982 1.20761 0.97592 0.88611 0.88488 1.44051 1.14914 1.72728 0.99722 1.19173 0.90629 1.20406 1.07919 0.91728 1.25041 0.98121 0.96464 1.00001 1.70023 1.33209 1.30512 1.21099 0.86323 0.85492 0.78168 0.76959 1.21370 1.21558 1.20472 1.21002 0.94184 0.91315 0.91688 1.22236 0.99314 1.00316 0.94646 1.23507 0.96628 0.99578 1.01704 1.23379 0.95107 1.03382 0.99781 0.90138 0.89043 0.91015 0.81392 0.81079 0.85979 0.85922 0.75628 0.91004 0.92248 0.93945 0.89393 0.96459 0.93643 0.96440 0.92621 0.91653 0.92851 0.88027 0.88094 0.88042 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.04 36.01 0.36 -0.27 16 2 C 0.22 2.66 7.89 -155.42 -1.23 1.43 16 3 N -0.49 -6.84 11.25 -10.81 -0.12 -6.96 16 4 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 5 C -0.05 -0.54 11.58 -16.56 -0.19 -0.73 16 6 N -0.44 -4.60 2.24 -115.19 -0.26 -4.86 16 7 C 0.08 0.62 6.16 -5.19 -0.03 0.59 16 8 C 0.49 5.34 7.60 -10.99 -0.08 5.26 16 9 O -0.52 -7.56 11.90 5.55 0.07 -7.50 16 10 N -0.69 -7.28 5.39 -47.60 -0.26 -7.54 16 11 C 0.10 1.37 2.98 -131.81 -0.39 0.98 16 12 C -0.04 -0.60 2.45 -90.58 -0.22 -0.82 16 13 C -0.13 -2.16 5.02 -26.61 -0.13 -2.30 16 14 C 0.17 3.73 5.30 -3.71 -0.02 3.71 16 15 N -0.59 -13.95 2.99 -172.06 -0.51 -14.46 16 16 C -0.25 -6.64 9.58 -15.06 -0.14 -6.78 16 17 H 0.06 1.69 7.89 -52.49 -0.41 1.27 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -25.20 11.20 55.49 0.62 -24.58 16 20 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.14 2.84 6.54 -3.48 -0.02 2.82 16 25 C -0.13 -1.99 4.02 -26.39 -0.11 -2.10 16 26 C -0.18 -2.44 8.84 -26.69 -0.24 -2.68 16 27 C -0.18 -2.38 9.06 -26.69 -0.24 -2.62 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.63 7.82 -51.93 -0.41 0.22 16 31 H 0.17 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.12 0.63 7.91 -51.93 -0.41 0.22 16 34 H 0.12 0.58 8.13 -51.93 -0.42 0.15 16 35 H 0.41 3.48 6.81 -40.82 -0.28 3.20 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.04 0.57 6.41 -51.93 -0.33 0.23 16 39 H 0.09 2.18 6.06 -51.93 -0.31 1.86 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 1.08 7.93 -51.94 -0.41 0.67 16 44 H 0.06 1.09 6.84 -51.93 -0.36 0.73 16 45 H 0.05 0.74 6.87 -51.93 -0.36 0.39 16 46 H 0.10 1.39 5.91 -51.93 -0.31 1.09 16 47 H 0.10 1.54 6.38 -51.93 -0.33 1.21 16 48 H 0.10 1.49 6.37 -51.93 -0.33 1.15 16 49 H 0.09 1.17 7.27 -51.93 -0.38 0.80 16 LS Contribution 381.61 15.07 5.75 5.75 Total: -1.00 -33.29 381.61 -10.30 -43.58 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.57 Total: 4.64 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.99 Total: -4.06 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -0.53 Total: -58.39 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.07 Total: -7.50 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.29 -10.30 -43.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508162084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.490 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds