Wall clock time and date at job start Tue Mar 31 2020 19:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30500 * 125.64358 * 2 1 4 4 C 1.34133 * 109.25550 * 179.97438 * 3 2 1 5 5 C 1.34677 * 108.01794 * 359.73211 * 4 3 2 6 6 N 1.35041 * 125.65557 * 179.97438 * 2 1 3 7 7 C 1.46503 * 126.39242 * 0.03569 * 6 2 1 8 8 C 1.50696 * 109.47015 * 85.00417 * 7 6 2 9 9 O 1.21283 * 120.00240 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00012 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00161 * 179.97438 * 10 8 7 12 12 C 1.53004 * 115.55304 * 179.97438 * 11 10 8 13 13 C 1.53050 * 109.45376 * 39.42245 * 12 11 10 14 14 C 1.53192 * 109.30905 * 181.37040 * 13 12 11 15 15 N 1.46924 * 108.77591 * 305.36282 * 14 13 12 16 16 C 1.36939 * 120.62993 * 233.58522 * 15 14 13 17 17 H 1.08002 * 119.99754 * 151.83452 * 16 15 14 18 18 C 1.38804 * 119.99958 * 331.83412 * 16 15 14 19 19 N 1.31622 * 120.00247 * 343.08098 * 18 16 15 20 20 Si 1.86810 * 119.99877 * 163.08052 * 18 16 15 21 21 H 1.48493 * 109.47005 * 90.00021 * 20 18 16 22 22 H 1.48501 * 109.47040 * 209.99959 * 20 18 16 23 23 H 1.48500 * 109.46752 * 329.99813 * 20 18 16 24 24 C 1.46927 * 118.74101 * 53.86337 * 15 14 13 25 25 C 1.53032 * 109.44921 * 159.47781 * 12 11 10 26 26 C 1.52998 * 117.50213 * 325.67095 * 11 10 8 27 27 C 1.53006 * 117.49848 * 34.33328 * 11 10 8 28 28 H 1.09002 * 109.46901 * 270.03455 * 1 2 3 29 29 H 1.08997 * 109.47352 * 30.04224 * 1 2 3 30 30 H 1.09004 * 109.46840 * 150.04066 * 1 2 3 31 31 H 1.07991 * 125.99450 * 180.02562 * 4 3 2 32 32 H 1.07999 * 126.59328 * 180.28493 * 5 4 3 33 33 H 1.08993 * 109.47200 * 325.00028 * 7 6 2 34 34 H 1.09004 * 109.46738 * 204.99544 * 7 6 2 35 35 H 0.97000 * 120.00186 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.46188 * 279.45087 * 12 11 10 37 37 H 1.08996 * 109.50047 * 61.41906 * 13 12 11 38 38 H 1.08996 * 109.52136 * 301.33822 * 13 12 11 39 39 H 1.09001 * 109.58625 * 185.57597 * 14 13 12 40 40 H 1.08998 * 109.58584 * 65.15378 * 14 13 12 41 41 H 0.97001 * 120.00021 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.58724 * 65.92301 * 24 15 14 43 43 H 1.08989 * 109.58969 * 186.35241 * 24 15 14 44 44 H 1.09004 * 109.50458 * 298.57809 * 25 12 11 45 45 H 1.08998 * 109.49939 * 58.64335 * 25 12 11 46 46 H 1.08996 * 117.50362 * 214.99940 * 26 11 10 47 47 H 1.09007 * 117.49748 * 0.02562 * 26 11 10 48 48 H 1.09001 * 117.49743 * 359.97013 * 27 11 10 49 49 H 1.08993 * 117.50052 * 144.97135 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6821 0.0006 5 6 3.5926 -0.6641 0.0069 6 7 2.2942 -1.0973 0.0005 7 6 1.8426 -2.4910 0.0004 8 6 1.5708 -2.9308 -1.4151 9 8 1.7374 -2.1562 -2.3334 10 7 1.1426 -4.1849 -1.6606 11 6 0.8778 -4.6124 -3.0367 12 6 0.3968 -6.0558 -3.1984 13 6 -0.5765 -6.3984 -2.0680 14 6 -1.0295 -7.8545 -2.2135 15 7 -1.5797 -8.0461 -3.5623 16 6 -2.8320 -8.5720 -3.7367 17 1 -3.4106 -8.3106 -4.6104 18 6 -3.3577 -9.4411 -2.7907 19 7 -2.5630 -10.0210 -1.9162 20 14 -5.1930 -9.7878 -2.7586 21 1 -5.4922 -10.9516 -3.6310 22 1 -5.6154 -10.0904 -1.3674 23 1 -5.9303 -8.5969 -3.2518 24 6 -0.7585 -7.6683 -4.7205 25 6 -0.3106 -6.2091 -4.5467 26 6 0.3189 -3.5685 -4.0056 27 6 1.7699 -4.0377 -4.1390 28 1 -0.3633 0.0006 1.0277 29 1 -0.3634 0.8896 -0.5145 30 1 -0.3633 -0.8904 -0.5132 31 1 4.4097 1.3412 0.0011 32 1 4.4777 -1.2830 0.0133 33 1 0.9296 -2.5771 0.5893 34 1 2.6166 -3.1236 0.4351 35 1 1.0098 -4.8046 -0.9263 36 1 1.2521 -6.7303 -3.1581 37 1 -1.4437 -5.7404 -2.1226 38 1 -0.0795 -6.2662 -1.1069 39 1 -1.7968 -8.0744 -1.4712 40 1 -0.1773 -8.5185 -2.0687 41 1 -2.9304 -10.6287 -1.2554 42 1 0.1154 -8.3174 -4.7761 43 1 -1.3468 -7.7653 -5.6328 44 1 -1.1804 -5.5529 -4.5781 45 1 0.3758 -5.9419 -5.3501 46 1 -0.3918 -3.9098 -4.7581 47 1 0.1486 -2.5635 -3.6193 48 1 2.5535 -3.3413 -3.8404 49 1 2.0140 -4.6879 -4.9790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508162084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:05 Heat of formation + Delta-G solvation = 64.265678 kcal Electronic energy + Delta-G solvation = -29207.477903 eV Core-core repulsion = 25364.674173 eV Total energy + Delta-G solvation = -3842.803730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.11540 -41.59332 -39.52731 -37.47715 -35.08718 -34.58851 -34.03057 -32.64373 -32.18830 -31.15646 -29.01894 -27.66538 -27.33197 -24.80465 -23.72744 -23.44949 -22.63514 -22.24401 -21.25780 -20.69480 -20.06646 -18.99608 -18.53882 -18.04204 -16.86215 -16.75825 -16.46763 -16.34334 -15.72726 -15.41650 -15.26091 -15.17670 -15.04343 -14.73099 -14.58572 -14.46734 -14.06587 -13.98779 -13.90708 -13.50379 -13.40900 -13.24196 -13.12881 -12.94170 -12.60008 -12.53240 -12.35732 -12.25553 -12.05677 -11.87626 -11.62084 -11.41254 -11.26609 -11.14645 -10.98202 -10.91104 -10.50736 -10.39124 -9.63601 -9.26852 -8.63929 -7.86044 -5.30306 0.96728 1.38921 1.46792 1.49080 1.57917 1.64602 2.15697 2.20104 2.52535 2.94243 3.28414 3.44463 3.59312 3.62923 3.74699 3.76278 3.81750 3.90978 4.01515 4.11258 4.22215 4.28640 4.42116 4.43554 4.55724 4.58420 4.66361 4.69233 4.74725 4.81525 4.83431 4.93708 4.99023 4.99712 5.06833 5.16356 5.24889 5.27428 5.30345 5.33230 5.43052 5.52530 5.57317 5.68383 5.82549 5.83616 6.16773 6.41991 6.46911 7.10462 7.14721 7.18466 7.90147 8.40354 9.19772 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.019998 B = 0.002575 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.825727 B =10873.211391 C =11472.106552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.203 3.797 3 N -0.535 5.535 4 C -0.056 4.056 5 C -0.047 4.047 6 N -0.442 5.442 7 C 0.085 3.915 8 C 0.494 3.506 9 O -0.555 6.555 10 N -0.679 5.679 11 C 0.115 3.885 12 C -0.032 4.032 13 C -0.116 4.116 14 C 0.176 3.824 15 N -0.611 5.611 16 C -0.261 4.261 17 H 0.062 0.938 18 C -0.048 4.048 19 N -0.932 5.932 20 Si 0.961 3.039 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.273 1.273 24 C 0.140 3.860 25 C -0.114 4.114 26 C -0.181 4.181 27 C -0.171 4.171 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.182 0.818 32 H 0.202 0.798 33 H 0.151 0.849 34 H 0.160 0.840 35 H 0.419 0.581 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.054 0.946 40 H -0.001 1.001 41 H 0.250 0.750 42 H 0.016 0.984 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.102 0.898 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.213 14.151 5.861 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.060 4.060 3 N -0.255 5.255 4 C -0.203 4.203 5 C -0.180 4.180 6 N -0.125 5.125 7 C -0.041 4.041 8 C 0.280 3.720 9 O -0.433 6.433 10 N -0.330 5.330 11 C 0.028 3.972 12 C -0.051 4.051 13 C -0.155 4.155 14 C 0.050 3.950 15 N -0.334 5.334 16 C -0.391 4.391 17 H 0.079 0.921 18 C -0.243 4.243 19 N -0.579 5.579 20 Si 0.789 3.211 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.198 1.198 24 C 0.014 3.986 25 C -0.153 4.153 26 C -0.219 4.219 27 C -0.209 4.209 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.199 0.801 32 H 0.219 0.781 33 H 0.169 0.831 34 H 0.177 0.823 35 H 0.258 0.742 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.017 0.983 41 H 0.059 0.941 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.120 0.880 47 H 0.105 0.895 48 H 0.109 0.891 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.973 15.254 5.353 19.538 hybrid contribution -0.589 -1.580 0.177 1.695 sum 10.384 13.674 5.530 18.038 Atomic orbital electron populations 1.20255 0.83677 1.04096 1.04525 1.23701 0.96655 0.81461 1.04181 1.70193 1.03574 1.29703 1.22054 1.22641 0.94711 0.94049 1.08864 1.23124 0.87565 0.96866 1.10400 1.44975 1.06638 1.06573 1.54325 1.21980 1.07005 0.80862 0.94258 1.21206 0.76930 0.81824 0.92041 1.90760 1.52197 1.53824 1.46542 1.45240 1.66459 1.13060 1.08268 1.20708 1.03779 0.93262 0.79493 1.20512 0.97560 0.90819 0.96195 1.21981 0.98181 0.97770 0.97614 1.20615 0.95699 0.91703 0.86978 1.44336 1.14805 1.72870 1.01420 1.19459 0.92026 1.19977 1.07665 0.92054 1.25708 1.01658 0.96821 1.00134 1.70158 1.34559 1.31349 1.21787 0.85381 0.81204 0.77914 0.76568 1.21415 1.21733 1.19808 1.21146 0.93490 0.93659 0.90277 1.22074 0.99706 0.97136 0.96374 1.23429 0.97130 0.99103 1.02254 1.23327 0.94389 1.03074 1.00119 0.88035 0.89773 0.90655 0.80065 0.78096 0.83128 0.82260 0.74187 0.90619 0.93185 0.90400 0.92794 0.98288 0.94105 0.96613 0.93073 0.92292 0.90360 0.87990 0.89512 0.89147 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.04 71.24 0.71 -0.42 16 2 C 0.20 4.65 7.89 138.13 1.09 5.74 16 3 N -0.54 -14.73 11.25 -188.13 -2.12 -16.85 16 4 C -0.06 -1.28 11.87 83.52 0.99 -0.29 16 5 C -0.05 -0.87 11.58 83.09 0.96 0.09 16 6 N -0.44 -8.17 2.24 -518.34 -1.16 -9.33 16 7 C 0.08 0.95 6.16 85.63 0.53 1.48 16 8 C 0.49 9.30 7.60 87.66 0.67 9.97 16 9 O -0.56 -15.38 11.90 -3.04 -0.04 -15.42 16 10 N -0.68 -12.17 5.39 -422.91 -2.28 -14.45 16 11 C 0.12 2.70 2.98 3.61 0.01 2.71 16 12 C -0.03 -0.85 2.45 -10.76 -0.03 -0.88 16 13 C -0.12 -3.57 5.02 30.68 0.15 -3.42 16 14 C 0.18 7.63 5.30 86.36 0.46 8.09 16 15 N -0.61 -28.85 2.99 -698.27 -2.09 -30.94 16 16 C -0.26 -13.86 9.58 84.03 0.81 -13.06 16 17 H 0.06 3.22 7.89 -2.91 -0.02 3.20 16 18 C -0.05 -2.57 4.92 84.86 0.42 -2.16 16 19 N -0.93 -52.86 11.20 21.65 0.24 -52.62 16 20 Si 0.96 43.53 29.59 68.60 2.03 45.55 16 21 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 C 0.14 5.39 6.54 86.51 0.57 5.96 16 25 C -0.11 -3.38 4.02 30.82 0.12 -3.26 16 26 C -0.18 -4.70 8.84 30.62 0.27 -4.43 16 27 C -0.17 -4.17 9.06 30.62 0.28 -3.89 16 28 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.19 7.82 -2.38 -0.02 1.17 16 31 H 0.18 3.22 8.06 -2.92 -0.02 3.19 16 32 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.15 0.88 7.91 -2.39 -0.02 0.86 16 34 H 0.16 0.67 8.13 -2.39 -0.02 0.65 16 35 H 0.42 5.42 6.81 -92.71 -0.63 4.78 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.83 6.41 -2.39 -0.02 1.81 16 39 H 0.05 2.71 6.06 -2.39 -0.01 2.70 16 40 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 42 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.05 1.97 7.93 -2.39 -0.02 1.96 16 44 H 0.06 1.86 6.84 -2.39 -0.02 1.84 16 45 H 0.08 1.96 6.87 -2.39 -0.02 1.95 16 46 H 0.10 2.62 5.91 -2.39 -0.01 2.61 16 47 H 0.09 2.56 6.38 -2.38 -0.02 2.54 16 48 H 0.09 2.48 6.37 -2.39 -0.02 2.47 16 49 H 0.10 2.31 7.27 -2.39 -0.02 2.29 16 Total: -1.00 -74.56 381.61 2.93 -71.63 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.33 Total: 20.20 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 8.01 Total: 2.22 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -7.40 Total: -124.19 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.04 Total: -15.42 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -74.56 2.93 -71.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508162084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.894 kcal (2) G-P(sol) polarization free energy of solvation -74.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds