Wall clock time and date at job start Tue Mar 31 2020 17:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31809 * 119.12476 * 2 1 4 4 C 1.32322 * 120.81553 * 180.02562 * 3 2 1 5 5 C 1.38620 * 119.10475 * 0.02562 * 4 3 2 6 6 C 1.38576 * 118.39907 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.44554 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47283 * 125.00129 * 7 6 5 9 9 C 1.50697 * 109.47296 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99664 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00191 * 179.97438 * 9 8 7 12 12 C 1.47021 * 125.64899 * 0.03248 * 11 9 8 13 13 C 1.54316 * 107.27543 * 178.89289 * 12 11 9 14 14 C 1.55163 * 102.93922 * 337.80450 * 13 12 11 15 15 H 1.08994 * 111.00440 * 277.38596 * 14 13 12 16 16 C 1.53004 * 111.00272 * 153.57661 * 14 13 12 17 17 N 1.46492 * 109.47363 * 66.45224 * 16 14 13 18 18 C 1.46505 * 119.99830 * 89.99532 * 17 16 14 19 19 C 1.36941 * 120.00350 * 270.27781 * 17 16 14 20 20 H 1.08002 * 119.99853 * 141.53545 * 19 17 16 21 21 C 1.38810 * 119.99848 * 321.54008 * 19 17 16 22 22 N 1.31609 * 120.00103 * 157.47591 * 21 19 17 23 23 Si 1.86807 * 119.99675 * 337.47256 * 21 19 17 24 24 H 1.48501 * 109.46978 * 95.66629 * 23 21 19 25 25 H 1.48494 * 109.46852 * 215.66732 * 23 21 19 26 26 H 1.48501 * 109.47163 * 335.66712 * 23 21 19 27 27 C 1.47424 * 125.64878 * 179.97438 * 11 9 8 28 28 N 1.31782 * 119.11864 * 180.29047 * 2 1 3 29 29 H 1.09010 * 109.46759 * 90.00104 * 1 2 3 30 30 H 1.08997 * 109.47461 * 210.00009 * 1 2 3 31 31 H 1.09002 * 109.46869 * 330.00691 * 1 2 3 32 32 H 1.08005 * 120.44780 * 180.02562 * 4 3 2 33 33 H 1.07998 * 120.79961 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47135 * 4.99443 * 7 6 5 35 35 H 1.09006 * 109.46601 * 244.99812 * 7 6 5 36 36 H 1.09005 * 109.46987 * 60.00165 * 8 7 6 37 37 H 1.08996 * 109.47182 * 299.99955 * 8 7 6 38 38 H 1.09005 * 109.88320 * 59.46842 * 12 11 9 39 39 H 1.09005 * 109.88245 * 298.31141 * 12 11 9 40 40 H 1.09000 * 110.72069 * 219.44222 * 13 12 11 41 41 H 1.08998 * 110.72029 * 96.16752 * 13 12 11 42 42 H 1.09004 * 109.46937 * 306.45506 * 16 14 13 43 43 H 1.09002 * 109.47081 * 186.45708 * 16 14 13 44 44 H 1.09003 * 109.46858 * 85.62937 * 18 17 16 45 45 H 1.08993 * 109.47325 * 205.62529 * 18 17 16 46 46 H 1.08994 * 109.47313 * 325.62943 * 18 17 16 47 47 H 0.97004 * 120.00198 * 179.97438 * 22 21 19 48 48 H 1.08994 * 110.36870 * 85.33634 * 27 11 9 49 49 H 1.09006 * 110.36708 * 323.01212 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4712 1.1905 -0.0005 5 6 4.1809 -0.0003 -0.0016 6 6 3.4712 -1.1905 -0.0015 7 6 4.1960 -2.5118 -0.0021 8 6 3.7164 -3.3571 1.1795 9 6 4.4408 -4.6786 1.1786 10 8 5.2603 -4.9202 0.3178 11 7 4.1786 -5.5915 2.1348 12 6 3.2142 -5.4296 3.2326 13 6 3.2336 -6.7348 4.0558 14 6 3.7924 -7.7733 3.0474 15 1 3.0035 -8.1487 2.3958 16 6 4.4919 -8.9230 3.7753 17 7 3.5051 -9.6889 4.5405 18 6 2.8180 -10.8245 3.9202 19 6 3.2205 -9.3399 5.8337 20 1 2.2053 -9.3977 6.1977 21 6 4.2368 -8.9117 6.6767 22 7 3.9521 -8.1742 7.7289 23 14 6.0085 -9.3825 6.3177 24 1 6.6700 -8.2849 5.5674 25 1 6.7283 -9.6122 7.5961 26 1 6.0356 -10.6246 5.5043 27 6 4.8106 -6.9182 2.2525 28 7 2.1483 -1.1513 -0.0058 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 3.9908 2.1373 -0.0001 33 1 5.2608 -0.0003 -0.0024 34 1 5.2683 -2.3379 0.0870 35 1 3.9895 -3.0390 -0.9336 36 1 2.6440 -3.5310 1.0903 37 1 3.9228 -2.8299 2.1109 38 1 2.2162 -5.2615 2.8276 39 1 3.5071 -4.5896 3.8625 40 1 2.2264 -7.0068 4.3712 41 1 3.8955 -6.6381 4.9164 42 1 5.2440 -8.5196 4.4535 43 1 4.9726 -9.5755 3.0464 44 1 3.4284 -11.7212 4.0277 45 1 1.8564 -10.9787 4.4095 46 1 2.6583 -10.6184 2.8619 47 1 4.6623 -7.8753 8.3183 48 1 5.7511 -6.8433 2.7982 49 1 4.9774 -7.3479 1.2647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664823968.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:17 Heat of formation + Delta-G solvation = 12.375538 kcal Electronic energy + Delta-G solvation = -28208.523551 eV Core-core repulsion = 24363.469696 eV Total energy + Delta-G solvation = -3845.053855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 10.15 seconds Orbital eigenvalues (eV) -42.09444 -41.13584 -39.10843 -37.17830 -36.11891 -34.36187 -33.86137 -33.11681 -32.20168 -30.42545 -29.46767 -28.26342 -27.67970 -26.28861 -24.38368 -23.74879 -23.03337 -22.59615 -21.38149 -20.15389 -18.80108 -18.60476 -18.31968 -17.31200 -17.17830 -16.95260 -16.65086 -16.11602 -16.05688 -15.78923 -15.70872 -15.16413 -14.93753 -14.58786 -14.35935 -14.23492 -14.12573 -13.91307 -13.72770 -13.53448 -13.47108 -13.22181 -13.19602 -13.19301 -13.00223 -12.66568 -12.48961 -12.33884 -12.17517 -11.94156 -11.81693 -11.71554 -11.59737 -11.54913 -11.27700 -10.96898 -10.59007 -10.34295 -10.22580 -9.69904 -8.70308 -8.15367 -5.51544 -0.08799 0.07911 1.29781 1.42520 1.51223 1.55752 1.94014 2.44021 2.72654 2.91102 3.06280 3.14419 3.32328 3.43568 3.65369 3.76333 3.87155 3.96826 4.04624 4.11812 4.12986 4.21388 4.31447 4.39773 4.47788 4.51222 4.54264 4.60550 4.62917 4.71568 4.73476 4.78747 4.81443 4.82276 4.92940 4.95013 5.04868 5.07850 5.08569 5.15069 5.17229 5.21171 5.38462 5.49497 5.53743 5.99328 6.05865 6.22664 6.49931 7.03287 7.06699 7.12091 7.67877 8.11515 9.03783 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.002314 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.228006 B =12098.336718 C =12277.265460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.302 3.698 3 N -0.545 5.545 4 C 0.148 3.852 5 C -0.228 4.228 6 C 0.169 3.831 7 C -0.048 4.048 8 C -0.115 4.115 9 C 0.527 3.473 10 O -0.582 6.582 11 N -0.616 5.616 12 C 0.105 3.895 13 C -0.098 4.098 14 C -0.103 4.103 15 H 0.087 0.913 16 C 0.144 3.856 17 N -0.623 5.623 18 C 0.123 3.877 19 C -0.243 4.243 20 H 0.045 0.955 21 C -0.005 4.005 22 N -0.939 5.939 23 Si 0.923 3.077 24 H -0.276 1.276 25 H -0.313 1.313 26 H -0.265 1.265 27 C 0.112 3.888 28 N -0.536 5.536 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.201 0.799 33 H 0.175 0.825 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.012 0.988 45 H 0.043 0.957 46 H 0.057 0.943 47 H 0.260 0.740 48 H 0.055 0.945 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 16.808 -16.991 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.035 3.965 3 N -0.260 5.260 4 C -0.017 4.017 5 C -0.250 4.250 6 C 0.024 3.976 7 C -0.086 4.086 8 C -0.156 4.156 9 C 0.317 3.683 10 O -0.463 6.463 11 N -0.349 5.349 12 C -0.017 4.017 13 C -0.137 4.137 14 C -0.124 4.124 15 H 0.105 0.895 16 C 0.018 3.982 17 N -0.347 5.347 18 C -0.022 4.022 19 C -0.373 4.373 20 H 0.063 0.937 21 C -0.203 4.203 22 N -0.584 5.584 23 Si 0.753 3.247 24 H -0.204 1.204 25 H -0.242 1.242 26 H -0.189 1.189 27 C -0.011 4.011 28 N -0.252 5.252 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.218 0.782 33 H 0.192 0.808 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.082 0.918 44 H 0.030 0.970 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.714 16.773 -17.371 24.299 hybrid contribution 1.901 -0.406 0.606 2.036 sum -0.813 16.367 -16.765 23.443 Atomic orbital electron populations 1.20652 0.84175 1.04786 1.04624 1.23785 0.99409 0.83283 0.90054 1.68330 1.11379 1.30570 1.15763 1.23850 0.89224 1.00102 0.88502 1.23085 1.04409 0.93350 1.04132 1.21842 0.89631 0.96416 0.89760 1.20277 0.99715 0.89632 0.99014 1.21464 1.01993 0.91263 1.00833 1.20772 0.82247 0.85868 0.79388 1.90668 1.36975 1.80140 1.38537 1.48665 1.41590 1.16640 1.27990 1.22213 0.92966 0.98856 0.87706 1.22278 1.02011 0.92751 0.96625 1.22807 0.97774 0.95522 0.96312 0.89508 1.21130 0.91206 0.92316 0.93565 1.44160 1.48395 1.31873 1.10308 1.21185 0.95726 0.88453 0.96806 1.18542 0.92402 1.39447 0.86912 0.93722 1.25851 1.00556 0.98360 0.95485 1.69965 1.33680 1.36410 1.18302 0.86185 0.83240 0.79579 0.75714 1.20351 1.24203 1.18922 1.22200 0.95936 0.82603 1.00389 1.68087 1.10247 1.31131 1.15750 0.88706 0.89202 0.88849 0.78197 0.80767 0.88160 0.89508 0.87281 0.87791 0.89367 0.90544 0.90957 0.93252 0.94826 0.91847 0.97019 0.93864 0.92448 0.93044 0.92641 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.32 71.24 0.74 -0.40 16 2 C 0.30 5.91 7.64 138.75 1.06 6.97 16 3 N -0.54 -10.34 10.34 -187.83 -1.94 -12.28 16 4 C 0.15 2.06 11.31 84.71 0.96 3.02 16 5 C -0.23 -3.16 9.80 22.44 0.22 -2.94 16 6 C 0.17 3.12 6.20 42.56 0.26 3.38 16 7 C -0.05 -0.89 4.94 29.85 0.15 -0.75 16 8 C -0.12 -2.34 4.76 29.85 0.14 -2.19 16 9 C 0.53 14.57 7.85 87.66 0.69 15.26 16 10 O -0.58 -19.64 16.24 -3.04 -0.05 -19.69 16 11 N -0.62 -17.66 3.33 -811.80 -2.70 -20.36 16 12 C 0.10 2.80 6.49 86.73 0.56 3.36 16 13 C -0.10 -3.45 5.39 31.78 0.17 -3.27 16 14 C -0.10 -3.42 3.29 -9.40 -0.03 -3.45 16 15 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 16 C 0.14 5.58 4.07 86.38 0.35 5.94 16 17 N -0.62 -27.22 2.41 -726.94 -1.75 -28.97 16 18 C 0.12 4.43 10.70 127.77 1.37 5.79 16 19 C -0.24 -12.77 8.92 84.03 0.75 -12.02 16 20 H 0.05 2.62 8.06 -2.91 -0.02 2.59 16 21 C -0.01 -0.30 5.28 84.86 0.45 0.15 16 22 N -0.94 -55.40 13.97 21.65 0.30 -55.09 16 23 Si 0.92 44.57 25.09 68.60 1.72 46.30 16 24 H -0.28 -12.77 6.68 99.48 0.66 -12.11 16 25 H -0.31 -15.59 7.11 99.48 0.71 -14.88 16 26 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 27 C 0.11 3.49 6.38 86.86 0.55 4.04 16 28 N -0.54 -11.30 9.94 -176.03 -1.75 -13.05 16 29 H 0.09 1.06 8.14 -2.38 -0.02 1.05 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.20 1.24 8.06 -2.91 -0.02 1.22 16 33 H 0.17 1.37 8.01 -2.91 -0.02 1.35 16 34 H 0.10 1.69 7.90 -2.39 -0.02 1.67 16 35 H 0.09 1.80 8.10 -2.38 -0.02 1.78 16 36 H 0.11 2.15 7.99 -2.38 -0.02 2.13 16 37 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.05 2.09 7.99 -2.39 -0.02 2.07 16 42 H 0.03 1.47 3.36 -2.38 -0.01 1.47 16 43 H 0.06 2.18 8.07 -2.39 -0.02 2.16 16 44 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.04 1.56 8.00 -2.39 -0.02 1.54 16 46 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 47 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 48 H 0.06 1.84 8.04 -2.39 -0.02 1.82 16 49 H 0.08 2.37 8.04 -2.38 -0.02 2.35 16 Total: -1.00 -69.54 396.85 3.10 -66.44 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.88 Total: 13.82 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 8.39 Total: 22.89 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -7.84 Total: -129.76 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.05 Total: -19.69 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.72 Total: 46.30 kcal Total: -69.54 3.10 -66.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664823968.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.818 kcal (2) G-P(sol) polarization free energy of solvation -69.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.15 seconds