Wall clock time and date at job start Tue Mar 31 2020 17:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31804 * 119.12364 * 2 1 4 4 C 1.32318 * 120.81495 * 180.02562 * 3 2 1 5 5 C 1.38618 * 119.10829 * 359.97438 * 4 3 2 6 6 C 1.38584 * 118.39528 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.44804 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47343 * 124.99812 * 7 6 5 9 9 C 1.50702 * 109.47528 * 180.02562 * 8 7 6 10 10 O 1.21287 * 119.99532 * 359.97438 * 9 8 7 11 11 N 1.34767 * 120.00378 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99945 * 180.02562 * 11 9 8 13 13 H 1.08996 * 110.01320 * 325.05367 * 12 11 9 14 14 C 1.53869 * 110.03687 * 86.44919 * 12 11 9 15 15 C 1.54270 * 106.63967 * 119.30767 * 14 12 11 16 16 C 1.54961 * 104.16191 * 336.44607 * 15 14 12 17 17 C 1.54268 * 110.06860 * 203.64340 * 12 11 9 18 18 H 1.09001 * 110.48482 * 145.62227 * 17 12 11 19 19 C 1.53001 * 110.49168 * 22.97616 * 17 12 11 20 20 N 1.46498 * 109.47314 * 174.99938 * 19 17 12 21 21 C 1.36939 * 119.99788 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99948 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99715 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00340 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99925 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47077 * 90.00192 * 25 23 21 27 27 H 1.48501 * 109.47005 * 210.00028 * 25 23 21 28 28 H 1.48500 * 109.47048 * 329.99563 * 25 23 21 29 29 N 1.31777 * 119.11801 * 180.29340 * 2 1 3 30 30 H 1.09006 * 109.47140 * 89.99830 * 1 2 3 31 31 H 1.08996 * 109.47790 * 209.99972 * 1 2 3 32 32 H 1.09008 * 109.47028 * 330.00635 * 1 2 3 33 33 H 1.07999 * 120.44642 * 180.02562 * 4 3 2 34 34 H 1.07994 * 120.80430 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47059 * 4.99458 * 7 6 5 36 36 H 1.08998 * 109.46942 * 244.99822 * 7 6 5 37 37 H 1.09003 * 109.47332 * 59.99813 * 8 7 6 38 38 H 1.09004 * 109.46702 * 299.99917 * 8 7 6 39 39 H 0.96998 * 119.99967 * 359.97438 * 11 9 8 40 40 H 1.09002 * 110.03268 * 238.61854 * 14 12 11 41 41 H 1.08995 * 110.03391 * 0.02562 * 14 12 11 42 42 H 1.08997 * 110.48585 * 95.09409 * 15 14 12 43 43 H 1.09002 * 110.48442 * 217.73292 * 15 14 12 44 44 H 1.09001 * 110.71970 * 279.57802 * 16 15 14 45 45 H 1.08998 * 110.76825 * 156.22170 * 16 15 14 46 46 H 1.08999 * 109.46664 * 295.00419 * 19 17 12 47 47 H 1.08996 * 109.46836 * 54.99656 * 19 17 12 48 48 H 0.96998 * 119.99943 * 0.02562 * 20 19 17 49 49 H 0.96999 * 119.99784 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4711 1.1905 -0.0005 5 6 4.1809 -0.0002 -0.0005 6 6 3.4712 -1.1905 -0.0005 7 6 4.1960 -2.5118 -0.0011 8 6 3.7164 -3.3571 1.1805 9 6 4.4416 -4.6782 1.1803 10 8 5.2611 -4.9199 0.3195 11 7 4.1788 -5.5913 2.1361 12 6 4.8843 -6.8753 2.1361 13 1 5.0653 -7.2015 1.1120 14 6 6.2186 -6.7437 2.8910 15 6 6.1538 -7.7275 4.0776 16 6 4.6367 -7.9239 4.3247 17 6 4.0544 -7.9353 2.8895 18 1 4.1841 -8.9165 2.4329 19 6 2.5755 -7.5434 2.9084 20 7 1.7931 -8.6191 3.5223 21 6 0.4356 -8.4914 3.6496 22 1 -0.0582 -7.5980 3.2970 23 6 -0.3057 -9.5104 4.2318 24 7 0.2962 -10.5991 4.6619 25 14 -2.1575 -9.3367 4.4048 26 1 -2.8212 -9.8829 3.1938 27 1 -2.6155 -10.0875 5.6014 28 1 -2.5080 -7.9017 4.5567 29 7 2.1483 -1.1512 -0.0059 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5138 33 1 3.9907 2.1373 -0.0001 34 1 5.2609 -0.0003 -0.0005 35 1 5.2683 -2.3380 0.0880 36 1 3.9895 -3.0390 -0.9325 37 1 2.6440 -3.5309 1.0914 38 1 3.9228 -2.8298 2.1119 39 1 3.5232 -5.3981 2.8243 40 1 7.0472 -7.0060 2.2333 41 1 6.3412 -5.7246 3.2578 42 1 6.6229 -8.6752 3.8133 43 1 6.6318 -7.2963 4.9572 44 1 4.2290 -7.0929 4.9004 45 1 4.4464 -8.8728 4.8263 46 1 2.4498 -6.6275 3.4858 47 1 2.2300 -7.3797 1.8878 48 1 2.2367 -9.4213 3.8393 49 1 -0.2218 -11.3109 5.0691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715564307.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:06 Heat of formation + Delta-G solvation = -18.421637 kcal Electronic energy + Delta-G solvation = -27888.697991 eV Core-core repulsion = 24042.308670 eV Total energy + Delta-G solvation = -3846.389321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.08382 -41.18077 -39.23500 -36.29875 -36.05067 -34.53637 -34.35377 -33.31358 -32.51606 -30.20435 -29.51774 -28.85269 -26.71691 -26.19464 -24.16652 -24.03495 -22.89609 -21.53620 -21.37839 -20.48849 -19.20402 -18.60320 -18.34248 -17.11080 -17.02246 -16.72381 -16.42306 -16.20406 -16.16083 -15.99069 -15.55348 -15.24428 -15.14674 -14.73707 -14.62641 -14.42951 -14.09358 -13.68311 -13.61942 -13.51734 -13.23407 -13.13854 -13.02521 -12.82317 -12.65362 -12.28494 -12.24125 -12.17211 -11.96318 -11.80927 -11.79701 -11.64696 -11.54746 -11.53589 -11.45681 -10.90917 -10.85773 -10.32733 -10.20966 -10.01003 -8.98934 -7.94637 -5.23090 -0.07917 0.09891 1.47921 1.49337 1.57551 1.66797 2.22209 2.56228 2.74264 2.94142 3.16491 3.38183 3.44519 3.53285 3.69709 3.78422 3.88756 4.06869 4.12439 4.15542 4.20384 4.24748 4.40764 4.48677 4.51195 4.55386 4.57298 4.61757 4.64811 4.69472 4.69823 4.80183 4.84941 4.88347 4.97357 5.03753 5.08292 5.08966 5.13188 5.25182 5.26979 5.38488 5.47355 5.50104 5.52215 5.62278 6.07841 6.27598 6.57240 7.13440 7.26247 7.34476 8.10233 8.33361 9.28856 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.008966 B = 0.002812 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.142437 B = 9953.275044 C =12703.040561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.301 3.699 3 N -0.545 5.545 4 C 0.147 3.853 5 C -0.225 4.225 6 C 0.167 3.833 7 C -0.047 4.047 8 C -0.125 4.125 9 C 0.516 3.484 10 O -0.579 6.579 11 N -0.715 5.715 12 C 0.154 3.846 13 H 0.074 0.926 14 C -0.122 4.122 15 C -0.115 4.115 16 C -0.110 4.110 17 C -0.100 4.100 18 H 0.076 0.924 19 C 0.167 3.833 20 N -0.742 5.742 21 C -0.244 4.244 22 H 0.075 0.925 23 C -0.074 4.074 24 N -0.969 5.969 25 Si 0.971 3.029 26 H -0.289 1.289 27 H -0.295 1.295 28 H -0.268 1.268 29 N -0.540 5.540 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.202 0.798 34 H 0.178 0.822 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.409 0.591 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.030 0.970 47 H 0.010 0.990 48 H 0.374 0.626 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.131 22.834 -6.597 26.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.034 3.966 3 N -0.261 5.261 4 C -0.018 4.018 5 C -0.247 4.247 6 C 0.022 3.978 7 C -0.086 4.086 8 C -0.165 4.165 9 C 0.304 3.696 10 O -0.459 6.459 11 N -0.368 5.368 12 C 0.048 3.952 13 H 0.092 0.908 14 C -0.160 4.160 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.120 4.120 18 H 0.094 0.906 19 C 0.040 3.960 20 N -0.384 5.384 21 C -0.376 4.376 22 H 0.093 0.907 23 C -0.267 4.267 24 N -0.619 5.619 25 Si 0.800 3.200 26 H -0.217 1.217 27 H -0.222 1.222 28 H -0.192 1.192 29 N -0.255 5.255 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.219 0.781 34 H 0.196 0.804 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.247 0.753 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.047 0.953 47 H 0.028 0.972 48 H 0.206 0.794 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.552 22.764 -7.227 26.530 hybrid contribution -0.463 -0.713 0.451 0.963 sum 11.089 22.050 -6.776 25.595 Atomic orbital electron populations 1.20644 0.84498 1.04682 1.04533 1.23710 0.99279 0.83364 0.90229 1.68321 1.11521 1.30446 1.15765 1.23874 0.89147 1.00218 0.88564 1.23096 1.04466 0.93174 1.03953 1.21924 0.89497 0.96679 0.89714 1.20274 0.99850 0.89461 0.98985 1.21509 1.01826 0.92056 1.01095 1.20962 0.82016 0.86372 0.80281 1.90669 1.36556 1.80151 1.38532 1.46275 1.43620 1.16236 1.30629 1.21473 0.91705 0.82512 0.99488 0.90817 1.22490 0.96050 1.00388 0.97089 1.22345 0.95238 0.99513 0.98129 1.22459 0.95698 1.01568 0.95043 1.22349 0.93863 0.98595 0.97172 0.90586 1.20688 0.89612 0.90932 0.94746 1.42537 1.04036 1.19434 1.72424 1.19618 0.85003 1.01483 1.31448 0.90670 1.25535 1.02307 0.96621 1.02208 1.69812 1.35957 1.08467 1.47711 0.85179 0.80468 0.77710 0.76656 1.21675 1.22212 1.19248 1.68098 1.10550 1.31166 1.15730 0.88855 0.89510 0.88759 0.78092 0.80427 0.87639 0.90011 0.88078 0.87084 0.75311 0.90855 0.90916 0.91023 0.90153 0.91593 0.92667 0.95275 0.97196 0.79355 0.94038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 10.32 71.24 0.74 -0.59 16 2 C 0.30 6.24 7.64 138.75 1.06 7.30 16 3 N -0.55 -10.55 10.33 -187.84 -1.94 -12.50 16 4 C 0.15 2.00 11.31 84.71 0.96 2.96 16 5 C -0.23 -2.96 9.80 22.44 0.22 -2.74 16 6 C 0.17 3.07 6.20 42.56 0.26 3.33 16 7 C -0.05 -0.84 4.94 29.85 0.15 -0.70 16 8 C -0.12 -2.33 5.57 29.85 0.17 -2.17 16 9 C 0.52 12.62 7.82 87.66 0.69 13.31 16 10 O -0.58 -17.71 15.66 -3.05 -0.05 -17.76 16 11 N -0.72 -17.33 4.38 -439.11 -1.92 -19.25 16 12 C 0.15 4.05 3.09 45.71 0.14 4.19 16 13 H 0.07 2.18 7.60 -2.39 -0.02 2.16 16 14 C -0.12 -2.67 6.58 31.32 0.21 -2.46 16 15 C -0.11 -2.47 6.84 31.70 0.22 -2.25 16 16 C -0.11 -3.08 6.19 31.91 0.20 -2.89 16 17 C -0.10 -3.09 2.85 -9.72 -0.03 -3.12 16 18 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 19 C 0.17 6.34 4.72 86.38 0.41 6.75 16 20 N -0.74 -36.84 5.49 -343.46 -1.89 -38.73 16 21 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 22 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 23 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 24 N -0.97 -58.93 13.06 21.65 0.28 -58.64 16 25 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 27 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 29 N -0.54 -11.96 9.95 -176.03 -1.75 -13.71 16 30 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.18 1.14 8.01 -2.91 -0.02 1.11 16 35 H 0.11 1.56 7.90 -2.39 -0.02 1.55 16 36 H 0.08 1.72 8.10 -2.39 -0.02 1.70 16 37 H 0.10 2.06 7.99 -2.39 -0.02 2.04 16 38 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.41 9.27 6.51 -92.71 -0.60 8.67 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 1.52 7.92 -2.39 -0.02 1.50 16 42 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.07 1.85 7.97 -2.39 -0.02 1.83 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.03 1.05 6.40 -2.39 -0.02 1.03 16 47 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.37 19.86 7.64 -92.71 -0.71 19.15 16 49 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -72.30 400.74 1.09 -71.21 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: -0.35 Total: 36.94 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 6.68 Total: 4.56 kcal Atomic # 7 Polarization: -135.61 SS G_CDS: -7.22 Total: -142.83 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.05 Total: -17.76 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -72.30 1.09 -71.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715564307.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.789 kcal (2) G-P(sol) polarization free energy of solvation -72.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds