Wall clock time and date at job start Tue Mar 31 2020 17:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47399 * 2 1 4 4 N 1.33318 * 126.10734 * 270.12575 * 3 2 1 5 5 C 1.30853 * 109.68451 * 180.27359 * 4 3 2 6 6 N 1.34496 * 109.16557 * 359.76066 * 5 4 3 7 7 H 0.97000 * 126.47724 * 180.02562 * 6 5 4 8 8 C 1.36661 * 126.10514 * 89.99907 * 3 2 1 9 9 C 1.46770 * 126.84905 * 0.02562 * 8 3 2 10 10 O 1.21684 * 119.99501 * 359.70571 * 9 8 3 11 11 N 1.34766 * 120.00401 * 179.70878 * 9 8 3 12 12 C 1.46500 * 120.00095 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.62647 * 34.60479 * 12 11 9 14 14 C 1.53296 * 109.79603 * 274.10627 * 12 11 9 15 15 C 1.52841 * 108.22152 * 176.41030 * 14 12 11 16 16 C 1.50894 * 111.57505 * 59.03299 * 15 14 12 17 17 H 1.09007 * 109.02665 * 186.21279 * 16 15 14 18 18 C 1.53376 * 113.08200 * 65.87439 * 16 15 14 19 19 N 1.47426 * 106.51065 * 212.46705 * 18 16 15 20 20 C 1.36940 * 125.72547 * 179.33365 * 19 18 16 21 21 H 1.07999 * 119.99802 * 174.59813 * 20 19 18 22 22 C 1.38814 * 119.99658 * 354.59760 * 20 19 18 23 23 N 1.31619 * 120.00342 * 6.99661 * 22 20 19 24 24 Si 1.86803 * 119.99705 * 186.99060 * 22 20 19 25 25 H 1.48507 * 109.46794 * 94.98959 * 24 22 20 26 26 H 1.48499 * 109.46982 * 214.98747 * 24 22 20 27 27 H 1.48493 * 109.47454 * 334.99122 * 24 22 20 28 28 C 1.47619 * 108.54980 * 359.32603 * 19 18 16 29 29 C 1.54053 * 113.56784 * 307.90170 * 16 15 14 30 30 H 1.08991 * 112.60832 * 281.75270 * 29 16 15 31 31 C 1.52628 * 109.63122 * 154.99890 * 12 11 9 32 32 H 1.08998 * 109.46997 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46776 * 300.00256 * 1 2 3 34 34 H 1.08994 * 109.47172 * 59.99632 * 1 2 3 35 35 H 1.09001 * 109.46776 * 239.99744 * 2 1 3 36 36 H 1.09003 * 109.46974 * 120.00225 * 2 1 3 37 37 H 1.08004 * 125.41997 * 179.78726 * 5 4 3 38 38 H 0.97007 * 119.99757 * 0.02562 * 11 9 8 39 39 H 1.08998 * 109.71756 * 296.08781 * 14 12 11 40 40 H 1.08993 * 109.71626 * 56.72649 * 14 12 11 41 41 H 1.09002 * 109.05752 * 179.57772 * 15 14 12 42 42 H 1.09003 * 109.05496 * 298.56753 * 15 14 12 43 43 H 1.08996 * 110.04623 * 331.72558 * 18 16 15 44 44 H 1.08999 * 110.04927 * 93.20039 * 18 16 15 45 45 H 0.96995 * 120.00317 * 179.97438 * 23 22 20 46 46 H 1.09002 * 110.43694 * 266.11484 * 28 19 18 47 47 H 1.09005 * 110.43222 * 143.61335 * 28 19 18 48 48 H 1.09001 * 109.18644 * 61.75774 * 31 12 11 49 49 H 1.09000 * 109.14993 * 302.47190 * 31 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2921 2.1622 -1.0771 5 6 2.7169 3.3433 -0.7072 6 7 2.7399 3.4035 0.6363 7 1 3.0128 4.1626 1.1749 8 6 2.3009 2.1800 1.1041 9 6 2.1579 1.7742 2.5074 10 8 1.7579 0.6578 2.7800 11 7 2.4695 2.6380 3.4938 12 6 2.3263 2.2330 4.8944 13 1 2.5659 1.1746 4.9958 14 6 0.8881 2.4828 5.3625 15 6 0.7552 1.9663 6.7949 16 6 1.7236 2.6547 7.7250 17 1 1.6722 2.1812 8.7055 18 6 1.4292 4.1497 7.9005 19 7 2.7308 4.8123 8.1012 20 6 2.9244 6.1554 8.2851 21 1 3.9108 6.5328 8.5108 22 6 1.8528 7.0317 8.1812 23 7 0.6305 6.5632 8.0434 24 14 2.1455 8.8758 8.2372 25 1 2.2529 9.4021 6.8527 26 1 1.0109 9.5362 8.9312 27 1 3.4053 9.1550 8.9720 28 6 3.7904 3.7849 8.0709 29 6 3.1820 2.6227 7.2297 30 1 3.6636 1.6611 7.4069 31 6 3.2694 3.0582 5.7657 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 3.0030 4.1429 -1.3745 38 1 2.7880 3.5281 3.2763 39 1 0.6728 3.5510 5.3355 40 1 0.1926 1.9505 4.7138 41 1 -0.2618 2.1441 7.1444 42 1 0.9531 0.8944 6.8064 43 1 0.9440 4.5423 7.0070 44 1 0.7923 4.3055 8.7712 45 1 -0.1183 7.1755 7.9713 46 1 4.0194 3.4445 9.0808 47 1 4.6859 4.1760 7.5879 48 1 2.9991 4.1113 5.6885 49 1 4.2918 2.9239 5.4125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980229708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:42 Heat of formation + Delta-G solvation = 29.016770 kcal Electronic energy + Delta-G solvation = -29480.208010 eV Core-core repulsion = 25635.875772 eV Total energy + Delta-G solvation = -3844.332237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.43769 -39.98092 -38.68138 -35.58914 -34.40532 -33.42915 -32.26253 -31.88324 -30.49887 -29.33913 -28.57400 -26.17538 -25.01843 -24.23991 -23.00544 -22.26099 -21.86799 -20.78236 -20.00948 -19.73924 -19.00102 -17.96618 -16.88937 -16.26665 -16.06496 -15.73565 -15.25350 -14.88840 -14.67107 -14.43828 -14.16534 -13.98385 -13.95397 -13.55573 -13.42679 -13.38623 -12.46119 -12.44495 -12.24064 -12.13184 -11.70782 -11.54049 -11.31545 -11.22183 -11.11082 -11.06415 -10.90076 -10.66256 -10.60917 -10.55166 -10.24406 -10.05104 -10.02087 -9.85635 -9.74033 -9.53743 -9.46563 -9.01050 -8.64315 -8.60568 -6.84979 -5.76634 -3.08467 1.12997 2.65081 2.66212 3.09182 3.23236 3.33623 3.40057 3.42095 4.21015 4.45169 4.61902 4.80316 4.92050 4.98807 5.07857 5.26080 5.37914 5.42387 5.44706 5.45814 5.50301 5.57776 5.58969 5.61543 5.71682 5.84472 5.89443 5.92517 5.95092 6.03640 6.14396 6.20544 6.26771 6.33401 6.39983 6.43460 6.49275 6.55278 6.62174 6.65612 6.71012 6.83244 6.94837 6.98814 7.40216 7.54058 7.63373 7.71499 7.81525 8.10807 8.21226 9.17403 9.78224 10.46333 11.35073 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.014498 B = 0.003104 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.807409 B = 9018.890855 C =10011.677500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.048 4.048 3 C 0.098 3.902 4 N -0.499 5.499 5 C 0.217 3.783 6 N -0.555 5.555 7 H 0.424 0.576 8 C -0.089 4.089 9 C 0.593 3.407 10 O -0.523 6.523 11 N -0.721 5.721 12 C 0.150 3.850 13 H 0.086 0.914 14 C -0.125 4.125 15 C -0.095 4.095 16 C -0.113 4.113 17 H 0.058 0.942 18 C 0.185 3.815 19 N -0.605 5.605 20 C -0.227 4.227 21 H 0.076 0.924 22 C -0.007 4.007 23 N -0.918 5.918 24 Si 0.907 3.093 25 H -0.291 1.291 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.137 3.863 29 C -0.092 4.092 30 H 0.076 0.924 31 C -0.114 4.114 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.215 0.785 38 H 0.393 0.607 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.037 0.963 45 H 0.251 0.749 46 H 0.017 0.983 47 H 0.039 0.961 48 H 0.085 0.915 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 -9.144 -13.921 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.086 4.086 3 C -0.036 4.036 4 N -0.219 5.219 5 C -0.067 4.067 6 N -0.160 5.160 7 H 0.263 0.737 8 C -0.205 4.205 9 C 0.380 3.620 10 O -0.399 6.399 11 N -0.370 5.370 12 C 0.046 3.954 13 H 0.104 0.896 14 C -0.164 4.164 15 C -0.133 4.133 16 C -0.133 4.133 17 H 0.077 0.923 18 C 0.060 3.940 19 N -0.332 5.332 20 C -0.356 4.356 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.565 5.565 24 Si 0.738 3.262 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.207 1.207 28 C 0.011 3.989 29 C -0.112 4.112 30 H 0.094 0.906 31 C -0.152 4.152 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.231 0.769 38 H 0.226 0.774 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.035 0.965 47 H 0.057 0.943 48 H 0.104 0.896 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.107 -10.029 -14.468 17.876 hybrid contribution 0.549 2.508 1.010 2.759 sum 3.656 -7.520 -13.458 15.844 Atomic orbital electron populations 1.21613 0.94370 1.01748 1.01822 1.20053 0.96257 0.88733 1.03606 1.21048 0.98955 0.97030 0.86609 1.70124 1.18497 1.02742 1.30516 1.25136 1.01518 0.97988 0.82090 1.43380 1.50154 1.13574 1.08873 0.73749 1.21059 1.15788 0.88275 0.95347 1.16817 0.77758 0.84985 0.82480 1.90813 1.46320 1.19934 1.82809 1.46063 1.67529 1.16514 1.06908 1.21065 0.96362 0.99881 0.78047 0.89564 1.21924 0.95527 1.02420 0.96503 1.20812 0.99673 0.98874 0.93945 1.21668 0.93795 0.99978 0.97834 0.92303 1.21075 0.87638 0.84869 1.00395 1.44605 1.01092 1.02247 1.85210 1.19046 0.94593 0.80740 1.41202 0.90609 1.24790 0.95388 0.97841 1.02309 1.69978 0.97569 1.32639 1.56362 0.86173 0.77076 0.85549 0.77440 1.21794 1.21799 1.20699 1.21829 0.92331 0.88999 0.95768 1.22218 0.96945 0.98073 0.93974 0.90594 1.21724 0.97666 1.01463 0.94374 0.92208 0.92499 0.92975 0.90771 0.88766 0.76877 0.77431 0.90767 0.92203 0.91819 0.92692 0.93113 0.94508 0.93836 0.96540 0.94278 0.89627 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.90 37.16 0.37 -1.15 16 2 C -0.05 -0.57 5.93 -27.88 -0.17 -0.73 16 3 C 0.10 1.25 6.40 -82.52 -0.53 0.72 16 4 N -0.50 -5.98 11.20 -10.65 -0.12 -6.10 16 5 C 0.22 1.84 13.01 -90.58 -1.18 0.66 16 6 N -0.55 -4.72 6.07 -10.79 -0.07 -4.78 16 7 H 0.42 2.35 8.32 -40.82 -0.34 2.02 16 8 C -0.09 -1.07 7.08 -82.14 -0.58 -1.65 16 9 C 0.59 8.08 7.77 -12.82 -0.10 7.98 16 10 O -0.52 -8.43 14.48 5.20 0.08 -8.36 16 11 N -0.72 -8.95 5.09 -55.12 -0.28 -9.23 16 12 C 0.15 2.12 2.43 -67.97 -0.17 1.95 16 13 H 0.09 1.28 7.57 -51.93 -0.39 0.89 16 14 C -0.13 -1.94 5.43 -26.66 -0.14 -2.08 16 15 C -0.09 -1.47 5.35 -27.87 -0.15 -1.62 16 16 C -0.11 -2.01 2.69 -90.93 -0.24 -2.25 16 17 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 18 C 0.18 4.22 4.36 -3.34 -0.01 4.21 16 19 N -0.61 -14.56 2.93 -169.58 -0.50 -15.06 16 20 C -0.23 -6.07 10.27 -15.06 -0.15 -6.22 16 21 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 22 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 23 N -0.92 -26.00 10.39 55.49 0.58 -25.43 16 24 Si 0.91 21.39 29.56 -169.99 -5.02 16.37 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 28 C 0.14 2.67 6.50 -1.91 -0.01 2.66 16 29 C -0.09 -1.50 3.72 -88.56 -0.33 -1.83 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 C -0.11 -1.72 4.29 -26.93 -0.12 -1.83 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.20 6.48 -51.93 -0.34 0.86 16 37 H 0.21 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.39 4.06 7.85 -40.82 -0.32 3.74 16 39 H 0.07 1.30 6.75 -51.93 -0.35 0.95 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 1.27 5.68 -51.93 -0.30 0.97 16 44 H 0.04 0.97 7.62 -51.93 -0.40 0.57 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.04 0.74 7.98 -51.93 -0.41 0.32 16 48 H 0.09 1.54 7.17 -51.93 -0.37 1.17 16 49 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 380.84 15.07 5.74 5.74 Total: -1.00 -32.45 380.84 -11.04 -43.50 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -7.84 Total: 4.84 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -3.61 Total: -1.48 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.39 Total: -60.61 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.08 Total: -8.36 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.45 -11.04 -43.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980229708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.513 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds