Wall clock time and date at job start Tue Mar 31 2020 18:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47458 * 2 1 4 4 C 1.50702 * 109.46517 * 119.99594 * 2 1 3 5 5 O 1.21281 * 120.00093 * 244.92757 * 4 2 1 6 6 N 1.34773 * 120.00174 * 64.93555 * 4 2 1 7 7 C 1.46599 * 119.68238 * 355.72709 * 6 4 2 8 8 C 1.53949 * 110.54809 * 132.22186 * 7 6 4 9 9 C 1.51440 * 107.38874 * 51.06402 * 8 7 6 10 10 H 1.09004 * 108.80883 * 53.41272 * 9 8 7 11 11 C 1.55364 * 107.77452 * 295.12532 * 9 8 7 12 12 H 1.09001 * 112.27839 * 309.13902 * 11 9 8 13 13 C 1.53740 * 100.21842 * 190.91292 * 11 9 8 14 14 C 1.55286 * 101.84230 * 39.09298 * 13 11 9 15 15 N 1.45466 * 117.35994 * 178.07839 * 9 8 7 16 16 C 1.36933 * 126.40623 * 329.32321 * 15 9 8 17 17 H 1.08006 * 119.99907 * 0.02562 * 16 15 9 18 18 C 1.38813 * 120.00004 * 180.02562 * 16 15 9 19 19 N 1.31618 * 119.99997 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99935 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47103 * 90.00414 * 20 18 16 22 22 H 1.48501 * 109.47005 * 210.00280 * 20 18 16 23 23 H 1.48500 * 109.47147 * 330.00650 * 20 18 16 24 24 C 1.47715 * 119.68467 * 175.75547 * 6 4 2 25 25 C 1.50700 * 109.47420 * 239.99405 * 2 1 3 26 26 C 1.34666 * 126.59026 * 231.77308 * 25 2 1 27 27 N 1.34131 * 108.01689 * 179.97438 * 26 25 2 28 28 C 1.30494 * 109.25927 * 0.02562 * 27 26 25 29 29 N 1.35053 * 108.69984 * 359.76410 * 28 27 26 30 30 H 0.96993 * 126.40130 * 180.26795 * 29 28 27 31 31 H 1.09001 * 109.47230 * 306.19918 * 1 2 3 32 32 H 1.09006 * 109.46616 * 66.18841 * 1 2 3 33 33 H 1.08993 * 109.47392 * 186.18670 * 1 2 3 34 34 H 1.08997 * 109.47638 * 175.58769 * 3 2 1 35 35 H 1.09005 * 109.46946 * 295.59010 * 3 2 1 36 36 H 1.09006 * 109.47603 * 55.58820 * 3 2 1 37 37 H 1.09004 * 109.25486 * 252.49069 * 7 6 4 38 38 H 1.09005 * 109.25503 * 11.96049 * 7 6 4 39 39 H 1.09003 * 109.88448 * 170.49358 * 8 7 6 40 40 H 1.08994 * 109.88284 * 291.57397 * 8 7 6 41 41 H 1.09003 * 110.95111 * 157.22548 * 13 11 9 42 42 H 1.08999 * 110.95911 * 280.94990 * 13 11 9 43 43 H 1.08999 * 109.92035 * 96.86479 * 14 13 11 44 44 H 1.08997 * 109.91979 * 218.16403 * 14 13 11 45 45 H 0.96997 * 120.00022 * 179.97438 * 19 18 16 46 46 H 1.09002 * 110.07068 * 351.24148 * 24 6 4 47 47 H 1.09002 * 110.07245 * 112.81792 * 24 6 4 48 48 H 1.07995 * 125.99493 * 359.96421 * 26 25 2 49 49 H 1.08003 * 125.65654 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 2.6539 -0.0981 2.0729 6 7 1.7906 -2.0260 1.3950 7 6 0.9592 -2.7388 0.4204 8 6 1.6363 -4.0530 -0.0089 9 6 2.0166 -4.7993 1.2528 10 1 1.1330 -4.8962 1.8836 11 6 3.0868 -3.9554 1.9987 12 1 3.9102 -3.6630 1.3472 13 6 3.5456 -4.9712 3.0576 14 6 3.5519 -6.2957 2.2470 15 7 2.6396 -6.1044 1.0954 16 6 2.4227 -6.9907 0.0744 17 1 1.7306 -6.7438 -0.7171 18 6 3.0925 -8.2064 0.0566 19 7 3.9356 -8.5075 1.0215 20 14 2.7972 -9.4152 -1.3366 21 1 3.7617 -9.1505 -2.4344 22 1 2.9837 -10.8012 -0.8373 23 1 1.4115 -9.2546 -1.8459 24 6 2.3655 -2.7359 2.5558 25 6 2.0324 -0.7105 -1.2304 26 6 2.9308 -1.7130 -1.2678 27 7 3.1050 -2.0663 -2.5500 28 6 2.3492 -1.3205 -3.3085 29 7 1.6596 -0.4642 -2.5242 30 1 1.0205 0.2019 -2.8221 31 1 -0.3634 0.6069 0.8293 32 1 -0.3633 0.4149 -0.9403 33 1 -0.3634 -1.0216 0.1107 34 1 3.1272 1.4435 0.0791 35 1 1.7427 1.9330 -0.9269 36 1 1.6137 1.9787 0.8478 37 1 -0.0086 -2.9628 0.8691 38 1 0.8115 -2.1076 -0.4560 39 1 0.9423 -4.6524 -0.5982 40 1 2.5295 -3.8357 -0.5946 41 1 4.5452 -4.7314 3.4203 42 1 2.8351 -5.0223 3.8826 43 1 4.5599 -6.5084 1.8909 44 1 3.1952 -7.1148 2.8714 45 1 4.4033 -9.3572 1.0092 46 1 3.0715 -2.0896 3.0774 47 1 1.5714 -3.0484 3.2340 48 1 3.4246 -2.1549 -0.4151 49 1 2.2831 -1.3805 -4.3848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036869607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:14 Heat of formation + Delta-G solvation = 71.878879 kcal Electronic energy + Delta-G solvation = -31142.402953 eV Core-core repulsion = 27299.929356 eV Total energy + Delta-G solvation = -3842.473597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.58803 -40.34181 -38.44104 -35.68499 -35.24677 -32.72623 -32.29128 -31.48293 -29.60033 -29.03637 -28.26767 -27.29430 -25.16973 -24.19602 -22.81686 -22.29866 -21.43901 -21.12172 -20.03629 -19.43176 -19.27902 -18.05774 -16.64176 -16.17615 -15.83910 -15.26534 -15.18588 -15.03985 -14.53340 -14.29274 -14.18509 -13.85950 -13.78879 -13.54007 -13.19916 -12.98268 -12.80906 -12.58205 -12.46615 -12.30290 -12.10188 -11.90610 -11.63718 -11.55948 -11.38439 -11.21708 -10.77325 -10.72554 -10.61202 -10.11338 -10.04354 -10.02125 -9.97132 -9.81062 -9.59118 -9.55182 -9.40454 -8.55951 -8.48429 -8.34756 -6.76935 -5.65134 -2.97678 1.87894 2.46763 2.98414 3.09168 3.16533 3.44938 3.49727 3.51161 4.21087 4.33373 4.55242 4.63799 4.70759 4.79274 5.07784 5.15412 5.17786 5.21922 5.30756 5.38734 5.41424 5.47190 5.52819 5.54964 5.61108 5.65323 5.65649 5.76960 5.87597 5.93708 5.98907 6.04058 6.07542 6.21430 6.26891 6.31871 6.41029 6.53324 6.65998 6.67039 6.74875 6.88642 7.14596 7.24065 7.47540 7.61347 7.67514 7.87245 8.02913 8.17626 8.30805 9.26114 9.89769 10.57523 11.47567 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.004361 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.419168 B = 6419.594185 C = 7689.903240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.004 4.004 3 C -0.124 4.124 4 C 0.529 3.471 5 O -0.539 6.539 6 N -0.598 5.598 7 C 0.097 3.903 8 C -0.134 4.134 9 C 0.171 3.829 10 H 0.017 0.983 11 C -0.124 4.124 12 H 0.079 0.921 13 C -0.136 4.136 14 C 0.177 3.823 15 N -0.593 5.593 16 C -0.221 4.221 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.125 3.875 25 C -0.028 4.028 26 C 0.002 3.998 27 N -0.480 5.480 28 C 0.185 3.815 29 N -0.565 5.565 30 H 0.416 0.584 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.038 0.962 45 H 0.251 0.749 46 H 0.090 0.910 47 H 0.069 0.931 48 H 0.171 0.829 49 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.194 19.764 -3.924 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.008 4.008 3 C -0.182 4.182 4 C 0.315 3.685 5 O -0.416 6.416 6 N -0.330 5.330 7 C -0.026 4.026 8 C -0.173 4.173 9 C 0.062 3.938 10 H 0.034 0.966 11 C -0.145 4.145 12 H 0.098 0.902 13 C -0.174 4.174 14 C 0.053 3.947 15 N -0.317 5.317 16 C -0.349 4.349 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.208 1.208 24 C 0.003 3.997 25 C -0.143 4.143 26 C -0.146 4.146 27 N -0.198 5.198 28 C -0.098 4.098 29 N -0.169 5.169 30 H 0.254 0.746 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.108 0.892 47 H 0.087 0.913 48 H 0.188 0.812 49 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.240 19.147 -3.801 20.820 hybrid contribution -1.036 0.061 -0.787 1.302 sum -8.276 19.208 -4.588 21.412 Atomic orbital electron populations 1.22177 0.91978 1.04128 1.02872 1.19185 0.96852 0.95892 0.88895 1.21676 1.02632 0.92110 1.01736 1.20022 0.79472 0.82074 0.86917 1.90680 1.41010 1.65645 1.44304 1.48276 1.50609 1.08062 1.26062 1.22284 0.93101 0.95043 0.92138 1.22015 1.01915 0.93875 0.99528 1.20582 0.93388 0.86301 0.93510 0.96616 1.22639 0.98941 0.93806 0.99074 0.90225 1.22714 0.99975 0.97578 0.97182 1.21529 0.95312 0.90832 0.87049 1.44183 1.48731 1.13521 1.25279 1.18976 1.20597 0.95290 1.00072 0.90489 1.24760 0.99273 0.97986 0.98367 1.69936 1.30975 1.23309 1.32772 0.86171 0.77639 0.80670 0.81609 1.21610 1.21808 1.20822 1.21674 0.97563 0.93490 0.86956 1.20562 1.05108 1.03459 0.85150 1.22365 0.99973 0.96959 0.95338 1.70408 1.22350 1.24904 1.02157 1.25057 0.94867 0.91279 0.98605 1.43124 1.35947 1.31521 1.06270 0.74625 0.91036 0.91917 0.90452 0.91340 0.92571 0.91170 0.92145 0.88818 0.91093 0.89829 0.92071 0.92389 0.92697 0.94417 0.93853 0.89211 0.91284 0.81197 0.77536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.13 37.16 0.30 -0.94 16 2 C 0.00 -0.04 0.73 -156.81 -0.11 -0.15 16 3 C -0.12 -1.19 7.76 37.16 0.29 -0.90 16 4 C 0.53 7.42 5.72 -10.99 -0.06 7.35 16 5 O -0.54 -9.07 15.36 5.56 0.09 -8.99 16 6 N -0.60 -8.45 2.23 -172.48 -0.38 -8.83 16 7 C 0.10 1.32 3.57 -3.49 -0.01 1.31 16 8 C -0.13 -2.35 5.02 -27.02 -0.14 -2.49 16 9 C 0.17 3.42 2.57 -68.02 -0.17 3.25 16 10 H 0.02 0.34 7.92 -51.93 -0.41 -0.07 16 11 C -0.12 -2.22 2.85 -89.36 -0.26 -2.47 16 12 H 0.08 1.54 8.02 -51.93 -0.42 1.13 16 13 C -0.14 -2.53 6.54 -25.14 -0.16 -2.70 16 14 C 0.18 4.30 5.45 -1.92 -0.01 4.29 16 15 N -0.59 -14.90 3.35 -163.14 -0.55 -15.45 16 16 C -0.22 -6.10 9.88 -15.06 -0.15 -6.25 16 17 H 0.08 2.06 7.21 -52.48 -0.38 1.68 16 18 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 19 N -0.92 -27.28 10.44 55.49 0.58 -26.70 16 20 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.12 1.89 5.94 -3.76 -0.02 1.87 16 25 C -0.03 -0.31 3.80 -81.60 -0.31 -0.62 16 26 C 0.00 0.03 7.19 -17.81 -0.13 -0.10 16 27 N -0.48 -7.16 11.25 -14.66 -0.16 -7.33 16 28 C 0.19 1.87 13.04 -90.37 -1.18 0.70 16 29 N -0.56 -4.65 6.05 -10.30 -0.06 -4.71 16 30 H 0.42 1.91 8.76 -40.82 -0.36 1.55 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.36 7.85 -51.93 -0.41 -0.05 16 33 H 0.08 0.67 5.07 -51.93 -0.26 0.41 16 34 H 0.07 0.78 8.05 -51.93 -0.42 0.36 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.76 7.98 -51.93 -0.41 0.35 16 38 H 0.09 1.14 3.02 -51.93 -0.16 0.99 16 39 H 0.07 1.31 7.62 -51.93 -0.40 0.91 16 40 H 0.08 1.61 5.44 -51.93 -0.28 1.33 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.00 8.11 -51.93 -0.42 0.57 16 43 H 0.05 1.49 7.21 -51.93 -0.37 1.11 16 44 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.09 1.38 7.03 -51.93 -0.36 1.02 16 47 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 48 H 0.17 2.87 5.86 -52.49 -0.31 2.56 16 49 H 0.21 1.27 8.06 -52.48 -0.42 0.84 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -33.84 363.16 -9.71 -43.55 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -7.44 Total: 3.80 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.22 Total: 1.83 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -0.58 Total: -63.02 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.84 -9.71 -43.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036869607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.432 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds