Wall clock time and date at job start Tue Mar 31 2020 16:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50705 * 109.46861 * 2 1 4 4 C 1.50704 * 119.99921 * 275.00422 * 3 2 1 5 5 C 1.32988 * 119.99647 * 95.00167 * 3 2 1 6 6 C 1.47109 * 119.99582 * 172.83844 * 5 3 2 7 7 O 1.21613 * 120.00005 * 354.00463 * 6 5 3 8 8 N 1.34775 * 119.99511 * 173.99651 * 6 5 3 9 9 C 1.47026 * 125.64303 * 180.02562 * 8 6 5 10 10 C 1.54328 * 107.26869 * 178.99850 * 9 8 6 11 11 H 1.08997 * 110.72274 * 96.17181 * 10 9 8 12 12 C 1.50699 * 110.71754 * 219.44340 * 10 9 8 13 13 C 1.39871 * 126.04368 * 53.21496 * 12 10 9 14 14 N 1.30831 * 108.20534 * 179.82026 * 13 12 10 15 15 N 1.40083 * 108.20723 * 0.43507 * 14 13 12 16 16 C 1.46504 * 126.04091 * 179.74228 * 15 14 13 17 17 C 1.34948 * 107.92228 * 359.72239 * 15 14 13 18 18 C 1.55154 * 102.94212 * 337.80561 * 10 9 8 19 19 H 1.09003 * 111.00357 * 277.38814 * 18 10 9 20 20 N 1.46495 * 111.00360 * 153.57925 * 18 10 9 21 21 C 1.36937 * 120.00189 * 158.18051 * 20 18 10 22 22 H 1.07997 * 120.00131 * 359.97438 * 21 20 18 23 23 C 1.38810 * 120.00161 * 180.27445 * 21 20 18 24 24 N 1.31627 * 120.00130 * 179.72117 * 23 21 20 25 25 Si 1.86803 * 120.00030 * 359.72319 * 23 21 20 26 26 H 1.48502 * 109.46819 * 90.00231 * 25 23 21 27 27 H 1.48499 * 109.47093 * 210.00140 * 25 23 21 28 28 H 1.48503 * 109.46993 * 330.00048 * 25 23 21 29 29 C 1.47469 * 125.63622 * 0.02764 * 8 6 5 30 30 H 1.09004 * 109.46902 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46845 * 299.99752 * 1 2 3 32 32 H 1.09001 * 109.47244 * 59.99731 * 1 2 3 33 33 H 1.08996 * 109.46720 * 240.00587 * 2 1 3 34 34 H 1.08997 * 109.47044 * 119.99793 * 2 1 3 35 35 H 1.09005 * 109.46769 * 264.38885 * 4 3 2 36 36 H 1.08993 * 109.47134 * 24.38548 * 4 3 2 37 37 H 1.08992 * 109.47182 * 144.39297 * 4 3 2 38 38 H 1.07999 * 120.00680 * 352.83942 * 5 3 2 39 39 H 1.09001 * 109.88518 * 59.58090 * 9 8 6 40 40 H 1.09004 * 110.01420 * 298.48519 * 9 8 6 41 41 H 1.07998 * 125.89271 * 359.97438 * 13 12 10 42 42 H 1.08998 * 109.46895 * 269.97279 * 16 15 14 43 43 H 1.09001 * 109.46879 * 29.97789 * 16 15 14 44 44 H 1.09009 * 109.46796 * 149.97641 * 16 15 14 45 45 H 1.08003 * 126.12845 * 180.02562 * 17 15 14 46 46 H 0.97000 * 120.00199 * 338.17790 * 20 18 10 47 47 H 0.96995 * 119.99552 * 180.02562 * 24 23 21 48 48 H 1.08997 * 110.34460 * 85.22697 * 29 8 6 49 49 H 1.09000 * 110.39782 * 322.89485 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1761 2.1692 -1.3002 5 6 2.3486 2.0143 1.1474 6 6 2.9856 3.3403 1.1385 7 8 3.3223 3.8461 0.0850 8 7 3.1960 3.9945 2.2978 9 6 3.8190 5.3194 2.4331 10 6 3.8252 5.6714 3.9357 11 1 4.7842 5.4175 4.3873 12 6 3.5060 7.1295 4.1430 13 6 2.3925 7.8082 3.6371 14 7 2.4595 9.0540 4.0310 15 7 3.6246 9.2101 4.7930 16 6 4.0839 10.4515 5.4209 17 6 4.2489 8.0150 4.8467 18 6 2.6949 4.7753 4.5073 19 1 1.7186 5.2376 4.3619 20 7 2.9261 4.4774 5.9229 21 6 1.8802 4.1028 6.7234 22 1 0.8847 4.0274 6.3114 23 6 2.0982 3.8261 8.0661 24 7 1.0919 3.4714 8.8369 25 14 3.8199 3.9571 8.7791 26 1 4.0433 5.3360 9.2829 27 1 3.9672 2.9914 9.8976 28 1 4.8176 3.6479 7.7235 29 6 2.8393 3.4998 3.6405 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.2046 2.0906 -1.6528 36 1 1.5037 1.7399 -2.0428 37 1 1.9244 3.2183 -1.1453 38 1 2.1378 1.5228 2.0857 39 1 3.2396 6.0596 1.8814 40 1 4.8408 5.2915 2.0547 41 1 1.6111 7.3775 3.0286 42 1 4.7232 10.9954 4.7256 43 1 3.2229 11.0673 5.6809 44 1 4.6474 10.2151 6.3236 45 1 5.1753 7.8030 5.3598 46 1 3.8200 4.5454 6.2931 47 1 1.2444 3.2784 9.7751 48 1 3.6321 2.8627 4.0325 49 1 1.8957 2.9553 3.6065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264499708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:58 Heat of formation + Delta-G solvation = 57.037433 kcal Electronic energy + Delta-G solvation = -28776.348267 eV Core-core repulsion = 24933.231097 eV Total energy + Delta-G solvation = -3843.117170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.22340 -41.03675 -39.09546 -36.98976 -35.88865 -34.47981 -33.45600 -32.58823 -31.76232 -30.26458 -29.25904 -28.59453 -27.09284 -25.68924 -24.94902 -23.76913 -22.54220 -21.71463 -21.10530 -20.80750 -19.54334 -18.96788 -18.22585 -17.62439 -17.10013 -16.41516 -16.30097 -16.23747 -15.78215 -15.42742 -15.28069 -15.10799 -14.85314 -14.71579 -14.46306 -14.30065 -14.03194 -13.79263 -13.63541 -13.53630 -13.45161 -13.35139 -13.24411 -13.01190 -12.91167 -12.61374 -12.54599 -12.31080 -12.24927 -12.17286 -11.81727 -11.74825 -11.71287 -11.41040 -11.01704 -10.58744 -10.31254 -10.13724 -9.54703 -9.42091 -9.07474 -7.96826 -5.31504 0.41526 0.99551 1.42217 1.45970 1.53492 1.73872 1.81354 2.09612 2.31000 2.53672 3.32965 3.37042 3.60843 3.78316 3.83854 3.91107 4.00980 4.05031 4.21323 4.23814 4.33683 4.35199 4.39958 4.44250 4.46333 4.48560 4.54651 4.67214 4.69795 4.77606 4.79249 4.84412 4.86849 4.96721 5.00931 5.04590 5.08969 5.13374 5.16401 5.33805 5.38105 5.42879 5.61336 5.66145 5.70814 5.82457 6.19326 6.25926 6.58475 6.75891 7.11898 7.22252 7.85197 8.06209 9.24489 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.008420 B = 0.003999 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.789036 B = 7000.780909 C = 9565.021550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.020 4.020 4 C -0.119 4.119 5 C -0.247 4.247 6 C 0.553 3.447 7 O -0.576 6.576 8 N -0.611 5.611 9 C 0.127 3.873 10 C -0.015 4.015 11 H 0.103 0.897 12 C -0.229 4.229 13 C 0.047 3.953 14 N -0.333 5.333 15 N -0.381 5.381 16 C 0.094 3.906 17 C 0.064 3.936 18 C 0.184 3.816 19 H 0.056 0.944 20 N -0.730 5.730 21 C -0.225 4.225 22 H 0.056 0.944 23 C -0.060 4.060 24 N -0.985 5.985 25 Si 0.951 3.049 26 H -0.281 1.281 27 H -0.302 1.302 28 H -0.242 1.242 29 C 0.087 3.913 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.132 0.868 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.180 0.820 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.110 0.890 45 H 0.204 0.796 46 H 0.370 0.630 47 H 0.256 0.744 48 H 0.072 0.928 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.426 2.358 -15.059 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.022 4.022 4 C -0.175 4.175 5 C -0.268 4.268 6 C 0.347 3.653 7 O -0.460 6.460 8 N -0.344 5.344 9 C 0.004 3.996 10 C -0.036 4.036 11 H 0.121 0.879 12 C -0.240 4.240 13 C -0.138 4.138 14 N -0.156 5.156 15 N -0.164 5.164 16 C -0.046 4.046 17 C -0.082 4.082 18 C 0.074 3.926 19 H 0.074 0.926 20 N -0.372 5.372 21 C -0.356 4.356 22 H 0.074 0.926 23 C -0.251 4.251 24 N -0.635 5.635 25 Si 0.778 3.222 26 H -0.207 1.207 27 H -0.230 1.230 28 H -0.166 1.166 29 C -0.039 4.039 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.150 0.850 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.197 0.803 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.128 0.872 45 H 0.221 0.779 46 H 0.204 0.796 47 H 0.065 0.935 48 H 0.091 0.909 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.869 3.877 -15.526 17.833 hybrid contribution 0.763 -0.732 1.188 1.590 sum 8.631 3.145 -14.339 17.029 Atomic orbital electron populations 1.21730 0.93656 1.02947 1.02090 1.20830 0.97045 0.90848 1.04420 1.22845 0.88836 0.95864 0.94689 1.21064 1.02326 1.00082 0.94041 1.22434 1.08559 0.95744 1.00017 1.18611 0.78963 0.85966 0.81734 1.90707 1.54410 1.70248 1.30608 1.48392 1.60065 1.19474 1.06428 1.21882 0.98274 0.83784 0.95694 1.20602 0.99597 0.89678 0.93743 0.87897 1.19748 0.98899 0.96028 1.09374 1.23811 0.98966 0.91028 1.00042 1.77234 1.04277 1.19902 1.14146 1.48737 1.17240 1.09860 1.40520 1.22165 1.01366 0.82332 0.98700 1.22782 1.00140 0.85065 1.00253 1.21369 0.97083 0.91693 0.82502 0.92553 1.42432 1.06824 1.82423 1.05522 1.18958 0.89384 1.36353 0.90931 0.92612 1.25445 1.01003 1.02042 0.96636 1.69893 1.32360 1.55136 1.06144 0.85476 0.81133 0.77254 0.78330 1.20711 1.22952 1.16618 1.23127 1.00630 0.99075 0.81061 0.90567 0.93456 0.92078 0.88566 0.90197 0.90935 0.90425 0.91671 0.84998 0.91803 0.90913 0.80346 0.89019 0.89584 0.87206 0.77899 0.79594 0.93523 0.90942 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.89 71.98 0.71 -1.51 16 2 C -0.09 -1.51 6.08 29.85 0.18 -1.33 16 3 C -0.02 -0.45 5.36 -17.61 -0.09 -0.55 16 4 C -0.12 -2.67 8.48 71.24 0.60 -2.07 16 5 C -0.25 -6.54 9.00 23.43 0.21 -6.33 16 6 C 0.55 17.41 7.65 86.57 0.66 18.07 16 7 O -0.58 -20.38 13.61 -4.07 -0.06 -20.44 16 8 N -0.61 -18.45 3.33 -815.97 -2.72 -21.16 16 9 C 0.13 3.52 6.42 86.73 0.56 4.08 16 10 C -0.02 -0.43 3.00 -10.35 -0.03 -0.46 16 11 H 0.10 2.55 7.99 -2.39 -0.02 2.53 16 12 C -0.23 -6.52 4.95 -20.14 -0.10 -6.62 16 13 C 0.05 1.45 10.73 85.24 0.91 2.37 16 14 N -0.33 -10.64 12.58 -57.03 -0.72 -11.36 16 15 N -0.38 -9.80 4.01 -369.54 -1.48 -11.29 16 16 C 0.09 1.47 11.47 127.77 1.47 2.93 16 17 C 0.06 1.59 11.40 83.54 0.95 2.54 16 18 C 0.18 6.40 3.12 46.37 0.14 6.54 16 19 H 0.06 2.19 7.66 -2.39 -0.02 2.17 16 20 N -0.73 -30.66 5.06 -316.43 -1.60 -32.26 16 21 C -0.23 -12.01 10.46 84.03 0.88 -11.13 16 22 H 0.06 3.32 8.06 -2.91 -0.02 3.30 16 23 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 24 N -0.98 -61.29 13.97 21.65 0.30 -60.99 16 25 Si 0.95 42.57 27.73 68.60 1.90 44.47 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 28 H -0.24 -9.38 6.52 99.48 0.65 -8.73 16 29 C 0.09 2.75 6.19 86.84 0.54 3.28 16 30 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.25 8.03 -2.39 -0.02 1.23 16 35 H 0.07 1.70 8.04 -2.38 -0.02 1.68 16 36 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 37 H 0.06 1.81 6.14 -2.39 -0.01 1.80 16 38 H 0.13 3.31 6.97 -2.91 -0.02 3.29 16 39 H 0.06 1.85 7.21 -2.39 -0.02 1.83 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.18 5.18 8.06 -2.91 -0.02 5.16 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.20 3.45 8.06 -2.91 -0.02 3.43 16 46 H 0.37 14.61 5.60 -92.71 -0.52 14.09 16 47 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 48 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.07 2.29 7.24 -2.39 -0.02 2.27 16 Total: -1.00 -73.82 399.45 4.06 -69.77 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: 0.36 Total: 36.33 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 8.06 Total: 6.93 kcal Atomic # 7 Polarization: -130.84 SS G_CDS: -6.22 Total: -137.06 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.06 Total: -20.44 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.90 Total: 44.47 kcal Total: -73.82 4.06 -69.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264499708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.804 kcal (2) G-P(sol) polarization free energy of solvation -73.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds