Wall clock time and date at job start Tue Mar 31 2020 18:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47397 * 2 1 4 4 N 1.46500 * 109.46598 * 119.99315 * 2 1 3 5 5 C 1.46499 * 120.00470 * 303.81157 * 4 2 1 6 6 C 1.50700 * 109.46727 * 270.00033 * 5 4 2 7 7 H 1.07998 * 120.00550 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99882 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00272 * 0.02562 * 8 6 5 10 10 Si 1.86811 * 120.00016 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46833 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.46984 * 119.99906 * 10 8 6 13 13 H 1.48500 * 109.46848 * 240.00141 * 10 8 6 14 14 C 1.34780 * 119.99758 * 123.80769 * 4 2 1 15 15 O 1.21603 * 119.99729 * 186.03044 * 14 4 2 16 16 C 1.47442 * 119.99905 * 6.02940 * 14 4 2 17 17 C 1.39755 * 120.99347 * 50.57250 * 16 14 4 18 18 N 1.32205 * 118.99980 * 179.75543 * 17 16 14 19 19 C 1.31971 * 121.19386 * 0.53482 * 18 17 16 20 20 C 1.50697 * 118.88812 * 179.71894 * 19 18 17 21 21 C 1.54893 * 110.59696 * 303.05341 * 20 19 18 22 22 C 1.54890 * 102.74779 * 156.67635 * 21 20 19 23 23 C 1.54267 * 104.19461 * 322.05953 * 22 21 20 24 24 C 1.53866 * 106.60049 * 23.60789 * 23 22 21 25 25 N 1.31679 * 122.22397 * 359.44433 * 19 18 17 26 26 C 1.32978 * 120.84312 * 0.27754 * 25 19 18 27 27 N 1.37876 * 120.63728 * 179.97438 * 26 25 19 28 28 H 1.08995 * 109.47518 * 300.00835 * 1 2 3 29 29 H 1.09008 * 109.46538 * 60.00377 * 1 2 3 30 30 H 1.09000 * 109.47527 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47518 * 239.99165 * 2 1 3 32 32 H 1.09001 * 109.47167 * 179.97438 * 3 2 1 33 33 H 1.09008 * 109.46969 * 299.99359 * 3 2 1 34 34 H 1.08995 * 109.47468 * 59.99134 * 3 2 1 35 35 H 1.09001 * 109.46971 * 29.99018 * 5 4 2 36 36 H 1.08997 * 109.47769 * 149.99897 * 5 4 2 37 37 H 0.96996 * 120.00459 * 179.97438 * 9 8 6 38 38 H 1.08004 * 120.50342 * 0.03495 * 17 16 14 39 39 H 1.09001 * 110.43683 * 180.43684 * 20 19 18 40 40 H 1.08990 * 110.75803 * 274.99128 * 21 20 19 41 41 H 1.08999 * 110.75738 * 38.36679 * 21 20 19 42 42 H 1.09000 * 110.48588 * 203.38077 * 22 21 20 43 43 H 1.08994 * 110.48556 * 80.73572 * 22 21 20 44 44 H 1.09005 * 110.03316 * 264.32325 * 23 22 21 45 45 H 1.08997 * 110.07472 * 142.91880 * 23 22 21 46 46 H 1.09006 * 110.03620 * 240.71676 * 24 23 22 47 47 H 1.09000 * 110.07144 * 119.30827 * 24 23 22 48 48 H 0.96999 * 119.99732 * 355.51585 * 27 26 25 49 49 H 0.96995 * 119.99929 * 175.52815 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 1.5968 -0.2405 2.5252 6 6 2.5653 0.7953 3.0353 7 1 3.4105 1.0886 2.4304 8 6 2.3725 1.3684 4.2744 9 7 1.3436 1.0109 5.0114 10 14 3.5735 2.6518 4.9071 11 1 4.6372 2.8756 3.8953 12 1 2.8515 3.9254 5.1555 13 1 4.1861 2.1749 6.1730 14 6 2.8551 -1.7399 1.0743 15 8 3.1735 -2.3811 2.0572 16 6 3.3845 -2.1104 -0.2510 17 6 3.9786 -1.1559 -1.0812 18 7 4.4445 -1.5324 -2.2597 19 6 4.3479 -2.7848 -2.6645 20 6 4.8909 -3.1556 -4.0205 21 6 4.2302 -2.2950 -5.1260 22 6 5.2725 -2.3498 -6.2704 23 6 6.6332 -2.2946 -5.5458 24 6 6.3906 -2.8068 -4.1153 25 7 3.7978 -3.7224 -1.9215 26 6 3.3062 -3.4385 -0.7190 27 7 2.7306 -4.4235 0.0553 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8898 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9564 0.8898 35 1 0.5994 0.1948 2.4620 36 1 1.5800 -1.0898 3.2082 37 1 1.2081 1.4138 5.8832 38 1 4.0600 -0.1270 -0.7629 39 1 4.7326 -4.2160 -4.2169 40 1 3.2844 -2.7338 -5.4435 41 1 4.0862 -1.2703 -4.7835 42 1 5.1577 -1.4915 -6.9324 43 1 5.1758 -3.2800 -6.8301 44 1 7.0000 -1.2685 -5.5178 45 1 7.3542 -2.9346 -6.0544 46 1 6.6396 -2.0294 -3.3930 47 1 6.9932 -3.6959 -3.9291 48 1 2.6224 -5.3192 -0.3010 49 1 2.4337 -4.2208 0.9561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597038610.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:40 Heat of formation + Delta-G solvation = -4.118363 kcal Electronic energy + Delta-G solvation = -29564.340865 eV Core-core repulsion = 25718.571780 eV Total energy + Delta-G solvation = -3845.769085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 12.09 seconds Orbital eigenvalues (eV) -41.19257 -39.13124 -37.90323 -36.28312 -35.23804 -33.19701 -32.67306 -31.04063 -30.75174 -29.03315 -28.83585 -27.15971 -26.79085 -24.30348 -23.73164 -22.74415 -21.44953 -20.65419 -20.21781 -18.73846 -18.29893 -17.40037 -16.93756 -16.46183 -16.01377 -15.60050 -15.32421 -15.20246 -14.79572 -14.36714 -14.13198 -13.91405 -13.65488 -13.48925 -13.38924 -13.16207 -12.45153 -12.30747 -12.10988 -12.05309 -11.78715 -11.60459 -11.43596 -11.37254 -11.24777 -11.21046 -11.10982 -10.94354 -10.88217 -10.82292 -10.66169 -10.55537 -10.43653 -10.07348 -9.72951 -9.58745 -9.16694 -9.05544 -8.47037 -8.25613 -7.74523 -6.08388 -4.12160 0.88096 1.45734 3.17620 3.27204 3.34965 3.36552 3.40685 3.76374 3.89451 4.00229 4.35010 4.41468 4.55039 4.56580 4.73701 4.86590 5.08567 5.22834 5.25603 5.27030 5.33849 5.37068 5.44934 5.47921 5.52494 5.53630 5.59667 5.66799 5.74415 5.77645 5.91419 5.98047 6.06072 6.10962 6.19985 6.21869 6.25353 6.29797 6.40118 6.54527 6.82068 6.89787 7.04147 7.20670 7.38755 7.47719 7.66193 7.88070 8.18650 8.29832 8.34737 8.80801 8.97278 9.52414 10.99731 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.016080 B = 0.003184 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.897810 B = 8791.025067 C = 9148.718669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 C -0.160 4.160 4 N -0.580 5.580 5 C 0.244 3.756 6 C -0.522 4.522 7 H 0.060 0.940 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.564 3.436 15 O -0.542 6.542 16 C -0.296 4.296 17 C 0.210 3.790 18 N -0.556 5.556 19 C 0.375 3.625 20 C -0.025 4.025 21 C -0.111 4.111 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.113 4.113 25 N -0.581 5.581 26 C 0.476 3.524 27 N -0.820 5.820 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.044 0.956 37 H 0.262 0.738 38 H 0.171 0.829 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.405 0.595 49 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 -6.643 -20.498 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.024 3.976 3 C -0.218 4.218 4 N -0.310 5.310 5 C 0.125 3.875 6 C -0.561 4.561 7 H 0.078 0.922 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.210 1.210 14 C 0.349 3.651 15 O -0.421 6.421 16 C -0.310 4.310 17 C 0.047 3.953 18 N -0.275 5.275 19 C 0.106 3.894 20 C -0.045 4.045 21 C -0.150 4.150 22 C -0.160 4.160 23 C -0.158 4.158 24 C -0.151 4.151 25 N -0.306 5.306 26 C 0.228 3.772 27 N -0.364 5.364 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.188 0.812 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.235 0.765 49 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.359 -7.157 -20.588 22.054 hybrid contribution 0.117 0.694 1.683 1.824 sum 3.476 -6.463 -18.905 20.279 Atomic orbital electron populations 1.22124 0.95214 1.01785 1.02632 1.21113 0.94487 0.94020 0.87954 1.22217 1.01080 0.95708 1.02785 1.48283 1.44537 1.29151 1.09021 1.19336 0.95620 0.95729 0.76785 1.21461 1.10656 1.21819 1.02142 0.92198 1.24920 0.95553 0.97119 0.96459 1.69931 1.28627 1.43113 1.11637 0.86488 0.81144 0.81103 0.78993 1.19732 1.20990 1.20953 1.17643 0.79558 0.81240 0.86652 1.90749 1.59528 1.53027 1.38824 1.21213 1.14320 0.94795 1.00693 1.23310 0.86003 0.99240 0.86760 1.68142 1.23646 1.18861 1.16840 1.22747 0.87790 0.84287 0.94557 1.20829 0.95461 1.00896 0.87352 1.22549 0.97792 1.00816 0.93812 1.22336 0.94581 1.01711 0.97350 1.22095 0.97316 1.01383 0.95018 1.22170 0.93686 1.01477 0.97796 1.67814 1.19125 1.37749 1.05944 1.18286 0.85145 0.86440 0.87299 1.42278 1.64688 1.11396 1.18007 0.90982 0.92169 0.93051 0.90879 0.92812 0.92900 0.89698 0.94430 0.93799 0.92783 0.81191 0.88502 0.91564 0.89886 0.91445 0.91670 0.91542 0.91955 0.90505 0.91763 0.76517 0.74320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.10 37.16 0.34 -2.04 16 2 C 0.13 2.11 2.49 -67.93 -0.17 1.94 16 3 C -0.16 -2.54 8.36 37.16 0.31 -2.23 16 4 N -0.58 -11.78 2.39 -168.73 -0.40 -12.18 16 5 C 0.24 6.03 4.74 -5.19 -0.02 6.00 16 6 C -0.52 -13.97 7.84 -34.44 -0.27 -14.24 16 7 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 10 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 14 C 0.56 11.62 6.69 -12.51 -0.08 11.54 16 15 O -0.54 -13.02 15.24 5.27 0.08 -12.94 16 16 C -0.30 -5.14 4.75 -104.52 -0.50 -5.64 16 17 C 0.21 3.33 8.87 -16.82 -0.15 3.18 16 18 N -0.56 -8.20 9.18 -10.45 -0.10 -8.29 16 19 C 0.37 5.27 6.45 -157.14 -1.01 4.25 16 20 C -0.02 -0.27 3.23 -90.11 -0.29 -0.56 16 21 C -0.11 -1.04 6.30 -24.74 -0.16 -1.19 16 22 C -0.12 -0.91 6.83 -25.07 -0.17 -1.08 16 23 C -0.12 -0.95 6.80 -25.62 -0.17 -1.13 16 24 C -0.11 -1.11 6.33 -25.62 -0.16 -1.27 16 25 N -0.58 -8.73 10.33 -9.75 -0.10 -8.83 16 26 C 0.48 7.60 7.82 -154.89 -1.21 6.39 16 27 N -0.82 -11.25 8.94 31.39 0.28 -10.96 16 28 H 0.07 1.19 6.55 -51.93 -0.34 0.85 16 29 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.11 5.01 -51.93 -0.26 0.85 16 32 H 0.05 0.86 6.75 -51.93 -0.35 0.51 16 33 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.08 1.58 6.92 -51.93 -0.36 1.22 16 35 H 0.04 0.94 6.23 -51.93 -0.32 0.62 16 36 H 0.04 1.24 7.35 -51.93 -0.38 0.86 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.17 2.57 6.01 -52.48 -0.32 2.25 16 39 H 0.10 0.98 8.12 -51.93 -0.42 0.56 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.88 7.63 -51.93 -0.40 0.48 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.89 7.41 -51.93 -0.38 0.50 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.41 4.36 8.95 -40.82 -0.37 4.00 16 49 H 0.42 6.30 6.84 -40.82 -0.28 6.02 16 LS Contribution 385.25 15.07 5.81 5.81 Total: -1.00 -31.07 385.25 -10.06 -41.13 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -7.52 Total: 9.45 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -3.82 Total: 5.52 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: 0.42 Total: -65.26 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.07 -10.06 -41.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597038610.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.009 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.10 seconds