Wall clock time and date at job start Tue Mar 31 2020 18:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47397 * 2 1 4 4 N 1.46500 * 109.46598 * 119.99315 * 2 1 3 5 5 C 1.46499 * 120.00470 * 303.81157 * 4 2 1 6 6 C 1.50700 * 109.46727 * 270.00033 * 5 4 2 7 7 H 1.07998 * 120.00550 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99882 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00272 * 0.02562 * 8 6 5 10 10 Si 1.86811 * 120.00016 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46833 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.46984 * 119.99906 * 10 8 6 13 13 H 1.48500 * 109.46848 * 240.00141 * 10 8 6 14 14 C 1.34780 * 119.99758 * 123.80769 * 4 2 1 15 15 O 1.21603 * 119.99729 * 186.03044 * 14 4 2 16 16 C 1.47442 * 119.99905 * 6.02940 * 14 4 2 17 17 C 1.39755 * 120.99347 * 50.57250 * 16 14 4 18 18 N 1.32205 * 118.99980 * 179.75543 * 17 16 14 19 19 C 1.31971 * 121.19386 * 0.53482 * 18 17 16 20 20 C 1.50697 * 118.88812 * 179.71894 * 19 18 17 21 21 C 1.54893 * 110.59696 * 303.05341 * 20 19 18 22 22 C 1.54890 * 102.74779 * 156.67635 * 21 20 19 23 23 C 1.54267 * 104.19461 * 322.05953 * 22 21 20 24 24 C 1.53866 * 106.60049 * 23.60789 * 23 22 21 25 25 N 1.31679 * 122.22397 * 359.44433 * 19 18 17 26 26 C 1.32978 * 120.84312 * 0.27754 * 25 19 18 27 27 N 1.37876 * 120.63728 * 179.97438 * 26 25 19 28 28 H 1.08995 * 109.47518 * 300.00835 * 1 2 3 29 29 H 1.09008 * 109.46538 * 60.00377 * 1 2 3 30 30 H 1.09000 * 109.47527 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47518 * 239.99165 * 2 1 3 32 32 H 1.09001 * 109.47167 * 179.97438 * 3 2 1 33 33 H 1.09008 * 109.46969 * 299.99359 * 3 2 1 34 34 H 1.08995 * 109.47468 * 59.99134 * 3 2 1 35 35 H 1.09001 * 109.46971 * 29.99018 * 5 4 2 36 36 H 1.08997 * 109.47769 * 149.99897 * 5 4 2 37 37 H 0.96996 * 120.00459 * 179.97438 * 9 8 6 38 38 H 1.08004 * 120.50342 * 0.03495 * 17 16 14 39 39 H 1.09001 * 110.43683 * 180.43684 * 20 19 18 40 40 H 1.08990 * 110.75803 * 274.99128 * 21 20 19 41 41 H 1.08999 * 110.75738 * 38.36679 * 21 20 19 42 42 H 1.09000 * 110.48588 * 203.38077 * 22 21 20 43 43 H 1.08994 * 110.48556 * 80.73572 * 22 21 20 44 44 H 1.09005 * 110.03316 * 264.32325 * 23 22 21 45 45 H 1.08997 * 110.07472 * 142.91880 * 23 22 21 46 46 H 1.09006 * 110.03620 * 240.71676 * 24 23 22 47 47 H 1.09000 * 110.07144 * 119.30827 * 24 23 22 48 48 H 0.96999 * 119.99732 * 355.51585 * 27 26 25 49 49 H 0.96995 * 119.99929 * 175.52815 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 1.5968 -0.2405 2.5252 6 6 2.5653 0.7953 3.0353 7 1 3.4105 1.0886 2.4304 8 6 2.3725 1.3684 4.2744 9 7 1.3436 1.0109 5.0114 10 14 3.5735 2.6518 4.9071 11 1 4.6372 2.8756 3.8953 12 1 2.8515 3.9254 5.1555 13 1 4.1861 2.1749 6.1730 14 6 2.8551 -1.7399 1.0743 15 8 3.1735 -2.3811 2.0572 16 6 3.3845 -2.1104 -0.2510 17 6 3.9786 -1.1559 -1.0812 18 7 4.4445 -1.5324 -2.2597 19 6 4.3479 -2.7848 -2.6645 20 6 4.8909 -3.1556 -4.0205 21 6 4.2302 -2.2950 -5.1260 22 6 5.2725 -2.3498 -6.2704 23 6 6.6332 -2.2946 -5.5458 24 6 6.3906 -2.8068 -4.1153 25 7 3.7978 -3.7224 -1.9215 26 6 3.3062 -3.4385 -0.7190 27 7 2.7306 -4.4235 0.0553 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8898 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9564 0.8898 35 1 0.5994 0.1948 2.4620 36 1 1.5800 -1.0898 3.2082 37 1 1.2081 1.4138 5.8832 38 1 4.0600 -0.1270 -0.7629 39 1 4.7326 -4.2160 -4.2169 40 1 3.2844 -2.7338 -5.4435 41 1 4.0862 -1.2703 -4.7835 42 1 5.1577 -1.4915 -6.9324 43 1 5.1758 -3.2800 -6.8301 44 1 7.0000 -1.2685 -5.5178 45 1 7.3542 -2.9346 -6.0544 46 1 6.6396 -2.0294 -3.3930 47 1 6.9932 -3.6959 -3.9291 48 1 2.6224 -5.3192 -0.3010 49 1 2.4337 -4.2208 0.9561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597038610.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:38 Heat of formation + Delta-G solvation = -22.463445 kcal Electronic energy + Delta-G solvation = -29565.136367 eV Core-core repulsion = 25718.571780 eV Total energy + Delta-G solvation = -3846.564587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 5.64 seconds Orbital eigenvalues (eV) -42.43590 -40.60283 -38.78679 -37.78840 -36.48015 -35.01650 -34.09841 -32.52849 -32.02308 -30.20177 -29.53224 -28.85584 -28.07658 -25.67599 -25.04475 -24.38002 -22.86471 -21.38634 -21.04712 -20.25944 -19.52042 -18.59834 -18.46981 -18.42076 -17.14021 -16.95635 -16.47890 -16.42319 -16.04677 -15.89041 -15.56399 -15.24372 -15.07396 -14.71765 -14.25493 -14.20946 -14.15541 -13.81722 -13.44687 -13.28780 -13.13448 -13.05876 -12.89071 -12.75981 -12.55088 -12.27957 -12.27522 -12.23449 -12.08040 -11.96683 -11.89061 -11.71531 -11.57280 -11.52422 -11.19570 -10.95260 -10.67776 -10.60171 -10.33884 -9.59814 -9.38859 -8.19326 -6.30678 -0.36467 0.22774 1.37499 1.39937 1.50741 1.67924 2.11473 2.24748 2.42329 2.67346 2.92308 3.11478 3.19862 3.49717 3.76455 3.80404 3.81997 3.90822 3.97807 4.22451 4.26370 4.34093 4.47977 4.61241 4.65394 4.68249 4.71494 4.78008 4.81933 4.90766 4.95195 4.99963 5.02171 5.09322 5.15577 5.18068 5.20919 5.35733 5.37039 5.39106 5.48832 5.53721 5.58812 5.61600 5.65107 5.83928 6.04224 6.10048 6.51570 6.67138 6.77654 7.14699 7.22049 7.41016 8.88295 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.016080 B = 0.003184 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.897810 B = 8791.025067 C = 9148.718669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 C -0.154 4.154 4 N -0.581 5.581 5 C 0.262 3.738 6 C -0.527 4.527 7 H 0.057 0.943 8 C 0.010 3.990 9 N -0.928 5.928 10 Si 0.959 3.041 11 H -0.266 1.266 12 H -0.272 1.272 13 H -0.286 1.286 14 C 0.563 3.437 15 O -0.587 6.587 16 C -0.318 4.318 17 C 0.219 3.781 18 N -0.555 5.555 19 C 0.376 3.624 20 C -0.027 4.027 21 C -0.109 4.109 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.112 4.112 25 N -0.583 5.583 26 C 0.473 3.527 27 N -0.810 5.810 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.032 0.968 36 H 0.000 1.000 37 H 0.265 0.735 38 H 0.176 0.824 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.419 0.581 49 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -6.272 -23.627 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 C -0.212 4.212 4 N -0.310 5.310 5 C 0.142 3.858 6 C -0.566 4.566 7 H 0.075 0.925 8 C -0.189 4.189 9 N -0.569 5.569 10 Si 0.784 3.216 11 H -0.190 1.190 12 H -0.197 1.197 13 H -0.212 1.212 14 C 0.350 3.650 15 O -0.469 6.469 16 C -0.332 4.332 17 C 0.054 3.946 18 N -0.274 5.274 19 C 0.108 3.892 20 C -0.048 4.048 21 C -0.147 4.147 22 C -0.153 4.153 23 C -0.155 4.155 24 C -0.150 4.150 25 N -0.308 5.308 26 C 0.224 3.776 27 N -0.353 5.353 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.018 0.982 37 H 0.074 0.926 38 H 0.193 0.807 39 H 0.125 0.875 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.089 0.911 48 H 0.251 0.749 49 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 4.242 -6.802 -23.774 25.089 hybrid contribution -0.162 0.507 2.580 2.635 sum 4.080 -6.294 -21.193 22.482 Atomic orbital electron populations 1.22090 0.93955 1.01966 1.03215 1.21406 0.95511 0.94179 0.86717 1.22157 1.00857 0.95140 1.03070 1.48242 1.44503 1.29521 1.08730 1.18789 0.95162 0.93473 0.78391 1.21686 1.10656 1.21909 1.02306 0.92456 1.25743 0.97185 0.99188 0.96770 1.70044 1.30292 1.44445 1.12071 0.85490 0.79107 0.78883 0.78105 1.19009 1.19750 1.21221 1.18091 0.78836 0.80522 0.87507 1.90712 1.61032 1.54460 1.40693 1.20903 1.16716 0.96056 0.99518 1.23393 0.85206 0.99196 0.86789 1.68264 1.23671 1.19287 1.16141 1.23524 0.86351 0.83907 0.95426 1.21047 0.96100 1.01785 0.85838 1.22542 0.98684 0.99649 0.93850 1.22330 0.93309 1.02942 0.96754 1.22091 0.98071 1.01573 0.93760 1.22171 0.92978 1.01182 0.98717 1.67971 1.19545 1.37803 1.05453 1.18435 0.85069 0.86291 0.87785 1.42258 1.63697 1.11833 1.17475 0.93212 0.88656 0.93109 0.89044 0.93149 0.89170 0.92727 0.95047 0.98160 0.92617 0.80697 0.87521 0.90848 0.91213 0.90441 0.90279 0.91653 0.90425 0.92509 0.91133 0.74861 0.74952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 9.10 71.98 0.65 -3.81 16 2 C 0.12 4.01 2.49 44.99 0.11 4.12 16 3 C -0.15 -4.73 8.36 71.98 0.60 -4.13 16 4 N -0.58 -24.26 2.39 -805.99 -1.92 -26.19 16 5 C 0.26 13.59 4.74 85.63 0.41 14.00 16 6 C -0.53 -29.01 7.84 25.60 0.20 -28.81 16 7 H 0.06 3.12 7.60 -2.91 -0.02 3.10 16 8 C 0.01 0.56 5.46 84.66 0.46 1.02 16 9 N -0.93 -54.91 13.29 21.45 0.28 -54.63 16 10 Si 0.96 44.21 29.54 68.60 2.03 46.23 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 13 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 14 C 0.56 23.90 6.69 86.67 0.58 24.48 16 15 O -0.59 -29.52 15.24 -4.04 -0.06 -29.58 16 16 C -0.32 -11.01 4.75 -19.80 -0.09 -11.10 16 17 C 0.22 6.73 8.87 85.00 0.75 7.48 16 18 N -0.56 -15.58 9.18 -186.98 -1.72 -17.30 16 19 C 0.38 9.94 6.45 138.73 0.89 10.83 16 20 C -0.03 -0.53 3.23 -10.47 -0.03 -0.56 16 21 C -0.11 -1.74 6.30 31.89 0.20 -1.54 16 22 C -0.12 -1.35 6.83 31.67 0.22 -1.13 16 23 C -0.12 -1.52 6.80 31.32 0.21 -1.31 16 24 C -0.11 -1.97 6.33 31.32 0.20 -1.77 16 25 N -0.58 -16.68 10.33 -184.75 -1.91 -18.59 16 26 C 0.47 14.85 7.82 133.74 1.05 15.90 16 27 N -0.81 -22.11 8.94 -54.60 -0.49 -22.60 16 28 H 0.05 1.66 6.55 -2.39 -0.02 1.64 16 29 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 2.65 5.01 -2.39 -0.01 2.64 16 32 H 0.05 1.56 6.75 -2.39 -0.02 1.54 16 33 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.05 2.02 6.92 -2.39 -0.02 2.00 16 35 H 0.03 1.66 6.23 -2.39 -0.01 1.64 16 36 H 0.00 0.02 7.35 -2.39 -0.02 0.00 16 37 H 0.26 14.78 8.31 -92.71 -0.77 14.00 16 38 H 0.18 5.13 6.01 -2.91 -0.02 5.11 16 39 H 0.11 1.87 8.12 -2.39 -0.02 1.85 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.32 7.63 -2.39 -0.02 1.30 16 42 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.06 1.23 7.41 -2.38 -0.02 1.22 16 47 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.42 8.73 8.95 -92.71 -0.83 7.90 16 49 H 0.42 12.81 6.84 -92.71 -0.63 12.17 16 Total: -1.00 -69.14 385.25 2.15 -66.99 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: -0.48 Total: 31.98 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 6.41 Total: 23.68 kcal Atomic # 7 Polarization: -133.55 SS G_CDS: -5.75 Total: -139.30 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.06 Total: -29.58 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -69.14 2.15 -66.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597038610.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.531 kcal (2) G-P(sol) polarization free energy of solvation -69.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.64 seconds