Wall clock time and date at job start Tue Mar 31 2020 17:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 120.00065 * 2 1 4 4 N 1.46505 * 109.47445 * 124.99580 * 3 2 1 5 5 C 1.36732 * 127.13852 * 270.01132 * 4 3 2 6 6 C 1.50704 * 126.35127 * 359.93214 * 5 4 3 7 7 H 1.09004 * 110.80090 * 3.63683 * 6 5 4 8 8 C 1.54811 * 110.91098 * 240.00666 * 6 5 4 9 9 C 1.54093 * 104.18723 * 220.91811 * 8 6 5 10 10 O 1.43746 * 107.29590 * 357.97250 * 9 8 6 11 11 C 1.44378 * 106.97571 * 26.50959 * 10 9 8 12 12 N 1.30292 * 107.30539 * 179.97438 * 5 4 3 13 13 N 1.28532 * 110.05405 * 359.72331 * 12 5 4 14 14 C 1.31222 * 109.85674 * 0.45487 * 13 12 5 15 15 N 1.38572 * 126.47172 * 179.82717 * 14 13 12 16 16 C 1.46840 * 111.00386 * 123.63930 * 15 14 13 17 17 C 1.53041 * 109.52596 * 185.83819 * 16 15 14 18 18 C 1.53123 * 109.27643 * 300.82086 * 17 16 15 19 19 C 1.53118 * 109.16174 * 57.65272 * 18 17 16 20 20 H 1.09002 * 109.50277 * 62.32247 * 19 18 17 21 21 C 1.50697 * 109.50411 * 182.40360 * 19 18 17 22 22 H 1.08003 * 120.00232 * 114.50840 * 21 19 18 23 23 C 1.37879 * 120.00084 * 294.50621 * 21 19 18 24 24 N 1.31518 * 120.00021 * 162.89206 * 23 21 19 25 25 Si 1.86800 * 119.99945 * 342.89880 * 23 21 19 26 26 H 1.48505 * 109.47041 * 269.99511 * 25 23 21 27 27 H 1.48498 * 109.47207 * 149.99709 * 25 23 21 28 28 H 1.48494 * 109.47385 * 29.99631 * 25 23 21 29 29 C 1.46854 * 110.99771 * 247.85227 * 15 14 13 30 30 H 1.07997 * 120.00461 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99642 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.00680 * 180.02562 * 2 1 3 33 33 H 1.09005 * 109.47031 * 4.99795 * 3 2 1 34 34 H 1.08996 * 109.47579 * 245.00374 * 3 2 1 35 35 H 1.09005 * 110.48403 * 339.59774 * 8 6 5 36 36 H 1.09000 * 110.48364 * 102.24502 * 8 6 5 37 37 H 1.09007 * 109.87634 * 117.39070 * 9 8 6 38 38 H 1.08996 * 109.88352 * 238.39566 * 9 8 6 39 39 H 1.09001 * 110.62232 * 201.44067 * 11 10 9 40 40 H 1.09001 * 110.61683 * 78.44270 * 11 10 9 41 41 H 1.08999 * 109.46460 * 65.82083 * 16 15 14 42 42 H 1.09000 * 109.45620 * 305.84885 * 16 15 14 43 43 H 1.08996 * 109.50450 * 180.87911 * 17 16 15 44 44 H 1.09001 * 109.50423 * 60.75729 * 17 16 15 45 45 H 1.08997 * 109.52117 * 297.74889 * 18 17 16 46 46 H 1.08996 * 109.57134 * 177.59178 * 18 17 16 47 47 H 0.97000 * 119.99801 * 354.70190 * 24 23 21 48 48 H 1.08997 * 109.45992 * 54.14041 * 29 15 14 49 49 H 1.09003 * 109.45808 * 294.17424 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.7445 1.7934 2.3943 6 6 1.4479 2.3785 2.8918 7 1 0.6812 2.3342 2.1183 8 6 1.6509 3.8315 3.3860 9 6 0.7989 3.9172 4.6671 10 8 0.1471 2.6467 4.8327 11 6 0.9756 1.6598 4.1814 12 7 3.8362 1.6344 3.0874 13 7 4.7494 1.1027 2.3558 14 6 4.2884 0.9011 1.1438 15 7 4.9831 0.3493 0.0794 16 6 4.2792 -0.8220 -0.4579 17 6 5.1422 -1.4894 -1.5313 18 6 5.4252 -0.4830 -2.6502 19 6 6.1151 0.7481 -2.0561 20 1 7.0719 0.4558 -1.6234 21 6 6.3442 1.7689 -3.1408 22 1 5.8311 2.7186 -3.1057 23 6 7.2089 1.4905 -4.1779 24 7 7.1649 2.2056 -5.2808 25 14 8.4429 0.0973 -4.0168 26 1 9.7051 0.6191 -3.4336 27 1 8.7180 -0.4780 -5.3579 28 1 7.8868 -0.9565 -3.1307 29 6 5.2240 1.3506 -0.9675 30 1 -0.5401 0.9352 -0.0004 31 1 -0.5399 -0.9353 -0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 1.3585 2.1317 0.0895 34 1 2.6212 1.4027 -0.9313 35 1 2.7013 4.0138 3.6134 36 1 1.2920 4.5414 2.6409 37 1 1.4396 4.1196 5.5255 38 1 0.0550 4.7073 4.5655 39 1 0.3933 0.7721 3.9347 40 1 1.8276 1.3990 4.8093 41 1 3.3326 -0.5071 -0.8970 42 1 4.0879 -1.5315 0.3471 43 1 4.6128 -2.3496 -1.9410 44 1 6.0834 -1.8170 -1.0899 45 1 4.4869 -0.1847 -3.1177 46 1 6.0750 -0.9400 -3.3965 47 1 6.4750 2.8776 -5.3958 48 1 5.7187 2.2190 -0.5325 49 1 4.2729 1.6554 -1.4041 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828477708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:03 Heat of formation + Delta-G solvation = 46.971160 kcal Electronic energy + Delta-G solvation = -30011.147001 eV Core-core repulsion = 26167.593325 eV Total energy + Delta-G solvation = -3843.553677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -44.25056 -40.50544 -40.09937 -37.33817 -35.85782 -34.42196 -34.11041 -33.19046 -32.13107 -30.83742 -29.40581 -28.06056 -26.73640 -25.46654 -24.64250 -23.28203 -23.10478 -22.63920 -21.31328 -21.08069 -20.42656 -19.72465 -18.66525 -17.80215 -17.43234 -17.22114 -16.98829 -16.24621 -16.12833 -15.98984 -15.84810 -15.32111 -15.10703 -14.85570 -14.71320 -14.43697 -14.27049 -14.12339 -14.00532 -13.53844 -13.28472 -13.20317 -12.80466 -12.68248 -12.63116 -12.59768 -12.47499 -12.29164 -12.01094 -11.89608 -11.75661 -11.57449 -11.45535 -11.23313 -11.14396 -10.82655 -10.73939 -10.64676 -10.47211 -10.13041 -9.83940 -8.74556 -6.38010 0.52051 0.83838 1.50585 1.52343 1.53695 1.63894 1.73404 2.30115 2.49999 2.75830 3.05745 3.24899 3.36668 3.49342 3.59186 3.66958 3.77164 3.82204 3.90405 3.95125 4.04894 4.11106 4.18091 4.24048 4.25301 4.32176 4.43037 4.52638 4.59831 4.62068 4.69374 4.75074 4.77643 4.82017 4.83668 4.87777 4.90430 4.93456 5.04895 5.11515 5.15422 5.37645 5.43203 5.47781 5.54289 5.61758 5.68998 5.77279 6.01151 6.08186 6.16188 6.55566 7.37758 7.63714 8.63332 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.003204 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.420353 B = 8736.383894 C = 9040.395095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.213 4.213 3 C 0.119 3.881 4 N -0.486 5.486 5 C 0.198 3.802 6 C -0.030 4.030 7 H 0.126 0.874 8 C -0.143 4.143 9 C 0.049 3.951 10 O -0.386 6.386 11 C 0.067 3.933 12 N -0.316 5.316 13 N -0.310 5.310 14 C 0.352 3.648 15 N -0.456 5.456 16 C 0.055 3.945 17 C -0.112 4.112 18 C -0.116 4.116 19 C 0.028 3.972 20 H 0.028 0.972 21 C -0.601 4.601 22 H 0.018 0.982 23 C -0.011 4.011 24 N -0.938 5.938 25 Si 1.077 2.923 26 H -0.283 1.283 27 H -0.287 1.287 28 H -0.232 1.232 29 C 0.094 3.906 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.254 0.746 48 H 0.045 0.955 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.555 -4.404 14.039 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.231 4.231 3 C -0.002 4.002 4 N -0.182 5.182 5 C -0.071 4.071 6 C -0.051 4.051 7 H 0.143 0.857 8 C -0.182 4.182 9 C -0.027 4.027 10 O -0.305 6.305 11 C -0.011 4.011 12 N -0.156 5.156 13 N -0.151 5.151 14 C -0.004 4.004 15 N -0.181 5.181 16 C -0.071 4.071 17 C -0.150 4.150 18 C -0.154 4.154 19 C 0.008 3.992 20 H 0.046 0.954 21 C -0.639 4.639 22 H 0.037 0.963 23 C -0.210 4.210 24 N -0.574 5.574 25 Si 0.899 3.101 26 H -0.209 1.209 27 H -0.213 1.213 28 H -0.155 1.155 29 C -0.032 4.032 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.085 0.915 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -17.059 -5.316 14.702 23.139 hybrid contribution -1.905 1.764 -1.198 2.859 sum -18.964 -3.552 13.504 23.550 Atomic orbital electron populations 1.24260 0.94420 1.04389 0.93446 1.23074 0.97177 0.96738 1.06156 1.21441 0.92208 0.99778 0.86759 1.47651 1.12279 1.46321 1.11924 1.24739 0.98822 1.01313 0.82223 1.21271 0.88538 0.95585 0.99697 0.85655 1.23025 1.01673 0.94664 0.98849 1.23279 0.96550 0.86685 0.96226 1.88871 1.46649 1.17492 1.77476 1.23508 0.94986 0.92455 0.90137 1.74014 0.97950 1.17330 1.26256 1.74439 1.23231 1.17434 1.00024 1.23229 0.81831 1.00644 0.94743 1.59121 1.43271 1.08002 1.07665 1.22594 0.96201 0.90251 0.98074 1.21667 1.00454 0.98166 0.94730 1.21935 1.00124 0.95830 0.97541 1.18992 0.94623 0.93862 0.91677 0.95434 1.22077 1.29965 1.02003 1.09835 0.96348 1.27045 1.00019 1.02653 0.91270 1.70944 1.35775 1.24007 1.26662 0.83710 0.74574 0.75055 0.76801 1.20890 1.21289 1.15513 1.22021 0.98669 0.92401 0.90124 0.86184 0.85793 0.86821 0.85599 0.89149 0.91363 0.87961 0.91916 0.87251 0.87018 0.92245 0.91879 0.89725 0.88364 0.91487 0.93265 0.92702 0.93724 0.93596 0.94581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 14.32 67.78 0.97 -0.27 16 2 C -0.21 -3.29 8.68 25.65 0.22 -3.06 16 3 C 0.12 2.33 5.40 85.63 0.46 2.79 16 4 N -0.49 -12.88 2.79 -518.90 -1.45 -14.33 16 5 C 0.20 5.13 6.63 137.64 0.91 6.05 16 6 C -0.03 -0.51 3.50 -10.24 -0.04 -0.55 16 7 H 0.13 1.50 7.10 -2.39 -0.02 1.48 16 8 C -0.14 -2.27 6.59 31.58 0.21 -2.07 16 9 C 0.05 0.70 7.70 72.35 0.56 1.26 16 10 O -0.39 -7.09 11.52 -148.98 -1.72 -8.81 16 11 C 0.07 1.17 7.16 72.66 0.52 1.69 16 12 N -0.32 -10.68 11.87 -49.54 -0.59 -11.27 16 13 N -0.31 -12.02 12.23 -58.01 -0.71 -12.73 16 14 C 0.35 12.08 6.65 260.12 1.73 13.81 16 15 N -0.46 -16.06 4.70 -706.16 -3.32 -19.38 16 16 C 0.05 1.54 4.28 86.33 0.37 1.91 16 17 C -0.11 -3.27 6.09 30.65 0.19 -3.08 16 18 C -0.12 -4.40 4.72 30.67 0.14 -4.25 16 19 C 0.03 1.26 1.81 -11.49 -0.02 1.24 16 20 H 0.03 1.29 6.71 -2.39 -0.02 1.27 16 21 C -0.60 -32.89 8.83 25.60 0.23 -32.66 16 22 H 0.02 1.10 7.99 -2.91 -0.02 1.08 16 23 C -0.01 -0.64 5.35 84.65 0.45 -0.18 16 24 N -0.94 -57.51 13.70 21.45 0.29 -57.22 16 25 Si 1.08 48.92 26.31 68.60 1.80 50.73 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 28 H -0.23 -9.12 5.50 99.48 0.55 -8.57 16 29 C 0.09 3.79 4.48 86.32 0.39 4.18 16 30 H 0.12 0.74 7.84 -2.91 -0.02 0.71 16 31 H 0.12 0.88 8.06 -2.91 -0.02 0.85 16 32 H 0.11 1.96 6.20 -2.91 -0.02 1.95 16 33 H 0.13 1.70 6.97 -2.38 -0.02 1.69 16 34 H 0.09 2.14 4.96 -2.39 -0.01 2.13 16 35 H 0.07 1.41 7.79 -2.38 -0.02 1.39 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.28 7.85 -2.39 -0.02 1.26 16 41 H 0.06 1.57 4.00 -2.39 -0.01 1.56 16 42 H 0.08 2.17 8.10 -2.39 -0.02 2.15 16 43 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.05 2.15 5.09 -2.39 -0.01 2.14 16 47 H 0.25 15.71 8.73 -92.71 -0.81 14.90 16 48 H 0.05 2.05 8.10 -2.39 -0.02 2.03 16 49 H 0.04 1.39 5.74 -2.39 -0.01 1.37 16 Total: -1.00 -72.68 373.23 2.36 -70.31 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.76 Total: 15.90 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 7.29 Total: -13.21 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -5.77 Total: -114.93 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -1.72 Total: -8.81 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 1.80 Total: 50.73 kcal Total: -72.68 2.36 -70.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828477708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.284 kcal (2) G-P(sol) polarization free energy of solvation -72.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds