Wall clock time and date at job start Tue Mar 31 2020 16:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47020 * 2 1 4 4 N 1.46498 * 109.47072 * 119.99852 * 2 1 3 5 5 N 1.28442 * 125.19414 * 306.10655 * 4 2 1 6 6 C 1.30869 * 110.92721 * 180.29877 * 5 4 2 7 7 C 1.39670 * 107.85945 * 359.71022 * 6 5 4 8 8 C 1.36609 * 125.18787 * 125.91318 * 4 2 1 9 9 C 1.47159 * 126.88375 * 359.97438 * 8 4 2 10 10 O 1.21633 * 120.00216 * 353.70333 * 9 8 4 11 11 N 1.34771 * 120.00084 * 173.69066 * 9 8 4 12 12 C 1.46503 * 120.00388 * 184.63004 * 11 9 8 13 13 C 1.53583 * 112.24043 * 298.99209 * 12 11 9 14 14 C 1.54221 * 106.67596 * 238.82377 * 13 12 11 15 15 C 1.54759 * 104.15646 * 335.06157 * 14 13 12 16 16 C 1.54776 * 103.21281 * 37.80701 * 15 14 13 17 17 H 1.08998 * 111.42110 * 84.69579 * 16 15 14 18 18 N 1.46985 * 109.16115 * 209.59413 * 16 15 14 19 19 C 1.36939 * 125.57786 * 294.37802 * 18 16 15 20 20 H 1.07994 * 120.00429 * 11.11938 * 19 18 16 21 21 C 1.38818 * 119.99675 * 191.12061 * 19 18 16 22 22 N 1.31628 * 119.99860 * 14.78145 * 21 19 18 23 23 Si 1.86795 * 120.00086 * 194.77984 * 21 19 18 24 24 H 1.48499 * 109.46930 * 94.99010 * 23 21 19 25 25 H 1.48500 * 109.47211 * 214.99394 * 23 21 19 26 26 H 1.48501 * 109.47166 * 334.99477 * 23 21 19 27 27 C 1.47370 * 108.84022 * 114.35969 * 18 16 15 28 28 C 1.54911 * 112.32880 * 62.35892 * 12 11 9 29 29 H 1.08998 * 109.46649 * 299.99831 * 1 2 3 30 30 H 1.08996 * 109.46813 * 59.99695 * 1 2 3 31 31 H 1.08997 * 109.46852 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46911 * 239.99697 * 2 1 3 33 33 H 1.09003 * 109.46980 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47576 * 299.99838 * 3 2 1 35 35 H 1.08997 * 109.47526 * 60.00073 * 3 2 1 36 36 H 1.08002 * 126.06878 * 179.73190 * 6 5 4 37 37 H 1.08004 * 127.31668 * 179.97438 * 7 6 5 38 38 H 0.97002 * 119.99831 * 4.63657 * 11 9 8 39 39 H 1.09000 * 110.02046 * 358.13228 * 13 12 11 40 40 H 1.09006 * 110.01498 * 119.47736 * 13 12 11 41 41 H 1.09004 * 110.49012 * 93.72130 * 14 13 12 42 42 H 1.08992 * 110.49834 * 216.39066 * 14 13 12 43 43 H 1.08999 * 110.67345 * 156.23804 * 15 14 13 44 44 H 1.08997 * 110.66882 * 279.20984 * 15 14 13 45 45 H 0.96997 * 119.99597 * 180.02562 * 22 21 19 46 46 H 1.08999 * 110.37381 * 94.14104 * 27 18 16 47 47 H 1.08996 * 110.37024 * 216.36148 * 27 18 16 48 48 H 1.09001 * 110.97273 * 204.33511 * 28 12 11 49 49 H 1.09004 * 110.97303 * 328.09930 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.6820 -0.4082 2.4032 6 6 2.2888 -1.1959 3.2540 7 6 3.0908 -2.0770 2.5251 8 6 2.8982 -1.7356 1.1978 9 6 3.5211 -2.3676 0.0239 10 8 3.1798 -2.0392 -1.0965 11 7 4.4699 -3.3102 0.1900 12 6 5.1620 -3.8665 -0.9753 13 6 4.1984 -4.5695 -1.9428 14 6 4.6778 -6.0305 -2.0612 15 6 6.1843 -5.9639 -1.7133 16 6 6.2396 -4.9103 -0.5808 17 1 6.0347 -5.3594 0.3910 18 7 7.5395 -4.2255 -0.6220 19 6 8.7546 -4.8072 -0.3763 20 1 8.8344 -5.8818 -0.3050 21 6 9.8840 -4.0154 -0.2189 22 7 9.7571 -2.7213 -0.0144 23 14 11.5836 -4.7864 -0.2972 24 1 12.1212 -4.6604 -1.6757 25 1 12.4876 -4.0893 0.6525 26 1 11.4929 -6.2226 0.0694 27 6 7.3211 -2.8106 -0.9714 28 6 5.9650 -2.7926 -1.7509 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9563 0.8899 36 1 2.1871 -1.1696 4.3289 37 1 3.7265 -2.8584 2.9146 38 1 4.6946 -3.6204 1.0812 39 1 3.1838 -4.5407 -1.5455 40 1 4.2305 -4.0852 -2.9189 41 1 4.1494 -6.6643 -1.3490 42 1 4.5368 -6.3972 -3.0778 43 1 6.5401 -6.9306 -1.3571 44 1 6.7642 -5.6359 -2.5760 45 1 10.5463 -2.1680 0.0952 46 1 7.2476 -2.2038 -0.0689 47 1 8.1289 -2.4477 -1.6069 48 1 6.1072 -3.0871 -2.7907 49 1 5.4787 -1.8192 -1.6858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990890779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:54 Heat of formation + Delta-G solvation = 64.608889 kcal Electronic energy + Delta-G solvation = -30143.699221 eV Core-core repulsion = 26300.910374 eV Total energy + Delta-G solvation = -3842.788847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.55135 -40.11447 -38.02082 -35.84601 -34.26122 -33.55988 -31.61700 -30.85770 -30.35619 -29.53458 -27.49597 -26.78126 -26.14405 -23.89745 -23.62609 -22.82317 -21.37942 -20.38889 -20.08208 -19.26228 -18.75433 -17.65491 -16.99038 -16.01862 -15.90541 -15.71820 -14.98191 -14.88752 -14.73089 -14.52505 -14.00554 -13.96574 -13.55332 -13.35324 -13.13970 -13.01887 -12.86302 -12.43399 -12.32467 -12.23383 -11.91238 -11.78775 -11.56535 -11.42541 -11.26777 -11.06088 -10.79215 -10.77510 -10.69461 -10.57200 -10.22189 -10.17705 -9.93332 -9.84804 -9.69328 -9.55806 -9.19763 -9.02997 -8.68003 -8.56284 -6.85865 -5.79498 -3.11464 1.33061 2.34875 2.64179 3.28481 3.37765 3.40016 3.44274 3.45668 4.38372 4.45681 4.61860 4.72545 4.84142 4.90383 5.06676 5.09850 5.14620 5.25906 5.33240 5.42341 5.44845 5.51985 5.54916 5.59419 5.68352 5.73817 5.75251 5.79444 5.90928 5.93669 5.97802 6.05015 6.09228 6.20285 6.27937 6.35568 6.45782 6.50376 6.51577 6.65839 6.72003 6.77647 6.90750 7.04197 7.43703 7.55959 7.66164 7.75111 8.08911 8.20048 8.31301 9.13988 9.77232 10.44245 11.33387 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.003483 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.175851 B = 8037.752668 C = 8749.812041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.126 3.874 3 C -0.160 4.160 4 N -0.249 5.249 5 N -0.279 5.279 6 C -0.008 4.008 7 C -0.190 4.190 8 C -0.034 4.034 9 C 0.592 3.408 10 O -0.541 6.541 11 N -0.686 5.686 12 C 0.163 3.837 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.163 3.837 17 H 0.047 0.953 18 N -0.591 5.591 19 C -0.231 4.231 20 H 0.077 0.923 21 C -0.003 4.003 22 N -0.912 5.912 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.176 3.824 28 C -0.144 4.144 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.138 0.862 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.184 0.816 37 H 0.160 0.840 38 H 0.404 0.596 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.253 0.747 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.002 1.999 0.886 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.026 3.974 3 C -0.217 4.217 4 N -0.038 5.038 5 N -0.111 5.111 6 C -0.183 4.183 7 C -0.219 4.219 8 C -0.162 4.162 9 C 0.378 3.622 10 O -0.420 6.420 11 N -0.335 5.335 12 C 0.077 3.923 13 C -0.150 4.150 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.055 3.945 17 H 0.065 0.935 18 N -0.315 5.315 19 C -0.359 4.359 20 H 0.094 0.906 21 C -0.201 4.201 22 N -0.558 5.558 23 Si 0.737 3.263 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.205 1.205 27 C 0.051 3.949 28 C -0.183 4.183 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.155 0.845 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.201 0.799 37 H 0.177 0.823 38 H 0.239 0.761 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.046 0.954 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.786 3.295 -0.065 18.089 hybrid contribution 1.678 -1.105 0.719 2.134 sum -16.108 2.191 0.654 16.269 Atomic orbital electron populations 1.22075 0.92932 1.02988 1.03381 1.22112 0.95915 0.94477 0.84889 1.22126 1.02227 0.94097 1.03292 1.45955 1.29853 1.22440 1.05569 1.73086 1.23223 1.24844 0.89968 1.23519 0.99084 0.95911 0.99826 1.22284 1.04728 1.04004 0.90879 1.21517 1.01765 0.97019 0.95947 1.16850 0.79377 0.79415 0.86604 1.90690 1.62988 1.63455 1.24853 1.45610 1.37392 1.39697 1.10786 1.21700 0.91126 0.94473 0.84991 1.22280 0.98171 0.95224 0.99288 1.22365 0.97172 0.96065 1.00698 1.22932 0.94370 0.99571 1.00139 1.21753 0.85895 0.90884 0.95985 0.93505 1.44459 1.00053 1.06020 1.81009 1.18970 0.83078 0.91169 1.42717 0.90563 1.24810 0.98090 0.95814 1.01357 1.70003 1.28110 1.04249 1.53403 0.86185 0.84367 0.78285 0.77439 1.21621 1.21881 1.20541 1.21632 0.91615 0.85704 0.95976 1.23582 0.98111 0.97721 0.98932 0.91190 0.90413 0.92087 0.84460 0.91797 0.90305 0.91419 0.79925 0.82290 0.76110 0.92140 0.91084 0.92267 0.92174 0.92217 0.90793 0.93702 0.95372 0.92009 0.91115 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.29 37.16 0.35 -1.16 16 2 C 0.13 1.50 3.56 -67.93 -0.24 1.26 16 3 C -0.16 -1.68 9.46 37.15 0.35 -1.32 16 4 N -0.25 -3.45 3.09 -50.69 -0.16 -3.60 16 5 N -0.28 -3.78 11.51 30.59 0.35 -3.42 16 6 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 7 C -0.19 -2.38 10.50 -38.99 -0.41 -2.79 16 8 C -0.03 -0.49 6.96 -82.06 -0.57 -1.06 16 9 C 0.59 9.36 6.94 -12.64 -0.09 9.27 16 10 O -0.54 -9.34 12.24 5.25 0.06 -9.28 16 11 N -0.69 -10.71 5.22 -46.50 -0.24 -10.95 16 12 C 0.16 2.80 0.73 -129.38 -0.09 2.70 16 13 C -0.11 -1.70 5.21 -25.79 -0.13 -1.84 16 14 C -0.12 -1.77 6.84 -25.17 -0.17 -1.94 16 15 C -0.13 -2.22 6.25 -24.87 -0.16 -2.38 16 16 C 0.16 3.12 3.63 -65.60 -0.24 2.88 16 17 H 0.05 0.89 7.99 -51.93 -0.41 0.48 16 18 N -0.59 -14.09 3.06 -160.14 -0.49 -14.58 16 19 C -0.23 -6.11 9.95 -15.06 -0.15 -6.26 16 20 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 21 C 0.00 -0.09 5.32 -17.42 -0.09 -0.18 16 22 N -0.91 -26.15 10.95 55.49 0.61 -25.55 16 23 Si 0.91 21.53 29.58 -169.99 -5.03 16.50 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.18 4.14 5.45 -1.72 -0.01 4.13 16 28 C -0.14 -2.79 5.87 -23.88 -0.14 -2.93 16 29 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.14 1.83 5.33 -51.93 -0.28 1.55 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.16 1.64 7.59 -52.48 -0.40 1.24 16 38 H 0.40 5.75 7.53 -40.82 -0.31 5.44 16 39 H 0.06 0.92 7.40 -51.93 -0.38 0.54 16 40 H 0.07 1.11 7.37 -51.93 -0.38 0.73 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.03 0.73 8.03 -51.93 -0.42 0.32 16 47 H 0.06 1.63 7.14 -51.93 -0.37 1.26 16 48 H 0.07 1.34 7.63 -51.93 -0.40 0.94 16 49 H 0.07 1.32 6.80 -51.93 -0.35 0.97 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -30.59 383.32 -9.02 -39.61 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -7.90 Total: 7.40 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.01 Total: -1.91 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.07 Total: -58.10 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.06 Total: -9.28 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.59 -9.02 -39.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990890779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.218 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds