Wall clock time and date at job start Tue Mar 31 2020 16:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47020 * 2 1 4 4 N 1.46498 * 109.47072 * 119.99852 * 2 1 3 5 5 N 1.28442 * 125.19414 * 306.10655 * 4 2 1 6 6 C 1.30869 * 110.92721 * 180.29877 * 5 4 2 7 7 C 1.39670 * 107.85945 * 359.71022 * 6 5 4 8 8 C 1.36609 * 125.18787 * 125.91318 * 4 2 1 9 9 C 1.47159 * 126.88375 * 359.97438 * 8 4 2 10 10 O 1.21633 * 120.00216 * 353.70333 * 9 8 4 11 11 N 1.34771 * 120.00084 * 173.69066 * 9 8 4 12 12 C 1.46503 * 120.00388 * 184.63004 * 11 9 8 13 13 C 1.53583 * 112.24043 * 298.99209 * 12 11 9 14 14 C 1.54221 * 106.67596 * 238.82377 * 13 12 11 15 15 C 1.54759 * 104.15646 * 335.06157 * 14 13 12 16 16 C 1.54776 * 103.21281 * 37.80701 * 15 14 13 17 17 H 1.08998 * 111.42110 * 84.69579 * 16 15 14 18 18 N 1.46985 * 109.16115 * 209.59413 * 16 15 14 19 19 C 1.36939 * 125.57786 * 294.37802 * 18 16 15 20 20 H 1.07994 * 120.00429 * 11.11938 * 19 18 16 21 21 C 1.38818 * 119.99675 * 191.12061 * 19 18 16 22 22 N 1.31628 * 119.99860 * 14.78145 * 21 19 18 23 23 Si 1.86795 * 120.00086 * 194.77984 * 21 19 18 24 24 H 1.48499 * 109.46930 * 94.99010 * 23 21 19 25 25 H 1.48500 * 109.47211 * 214.99394 * 23 21 19 26 26 H 1.48501 * 109.47166 * 334.99477 * 23 21 19 27 27 C 1.47370 * 108.84022 * 114.35969 * 18 16 15 28 28 C 1.54911 * 112.32880 * 62.35892 * 12 11 9 29 29 H 1.08998 * 109.46649 * 299.99831 * 1 2 3 30 30 H 1.08996 * 109.46813 * 59.99695 * 1 2 3 31 31 H 1.08997 * 109.46852 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46911 * 239.99697 * 2 1 3 33 33 H 1.09003 * 109.46980 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47576 * 299.99838 * 3 2 1 35 35 H 1.08997 * 109.47526 * 60.00073 * 3 2 1 36 36 H 1.08002 * 126.06878 * 179.73190 * 6 5 4 37 37 H 1.08004 * 127.31668 * 179.97438 * 7 6 5 38 38 H 0.97002 * 119.99831 * 4.63657 * 11 9 8 39 39 H 1.09000 * 110.02046 * 358.13228 * 13 12 11 40 40 H 1.09006 * 110.01498 * 119.47736 * 13 12 11 41 41 H 1.09004 * 110.49012 * 93.72130 * 14 13 12 42 42 H 1.08992 * 110.49834 * 216.39066 * 14 13 12 43 43 H 1.08999 * 110.67345 * 156.23804 * 15 14 13 44 44 H 1.08997 * 110.66882 * 279.20984 * 15 14 13 45 45 H 0.96997 * 119.99597 * 180.02562 * 22 21 19 46 46 H 1.08999 * 110.37381 * 94.14104 * 27 18 16 47 47 H 1.08996 * 110.37024 * 216.36148 * 27 18 16 48 48 H 1.09001 * 110.97273 * 204.33511 * 28 12 11 49 49 H 1.09004 * 110.97303 * 328.09930 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.6820 -0.4082 2.4032 6 6 2.2888 -1.1959 3.2540 7 6 3.0908 -2.0770 2.5251 8 6 2.8982 -1.7356 1.1978 9 6 3.5211 -2.3676 0.0239 10 8 3.1798 -2.0392 -1.0965 11 7 4.4699 -3.3102 0.1900 12 6 5.1620 -3.8665 -0.9753 13 6 4.1984 -4.5695 -1.9428 14 6 4.6778 -6.0305 -2.0612 15 6 6.1843 -5.9639 -1.7133 16 6 6.2396 -4.9103 -0.5808 17 1 6.0347 -5.3594 0.3910 18 7 7.5395 -4.2255 -0.6220 19 6 8.7546 -4.8072 -0.3763 20 1 8.8344 -5.8818 -0.3050 21 6 9.8840 -4.0154 -0.2189 22 7 9.7571 -2.7213 -0.0144 23 14 11.5836 -4.7864 -0.2972 24 1 12.1212 -4.6604 -1.6757 25 1 12.4876 -4.0893 0.6525 26 1 11.4929 -6.2226 0.0694 27 6 7.3211 -2.8106 -0.9714 28 6 5.9650 -2.7926 -1.7509 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9563 0.8899 36 1 2.1871 -1.1696 4.3289 37 1 3.7265 -2.8584 2.9146 38 1 4.6946 -3.6204 1.0812 39 1 3.1838 -4.5407 -1.5455 40 1 4.2305 -4.0852 -2.9189 41 1 4.1494 -6.6643 -1.3490 42 1 4.5368 -6.3972 -3.0778 43 1 6.5401 -6.9306 -1.3571 44 1 6.7642 -5.6359 -2.5760 45 1 10.5463 -2.1680 0.0952 46 1 7.2476 -2.2038 -0.0689 47 1 8.1289 -2.4477 -1.6069 48 1 6.1072 -3.0871 -2.7907 49 1 5.4787 -1.8192 -1.6858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990890779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:53 Heat of formation + Delta-G solvation = 46.567455 kcal Electronic energy + Delta-G solvation = -30144.481556 eV Core-core repulsion = 26300.910374 eV Total energy + Delta-G solvation = -3843.571183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -43.55574 -41.51159 -39.40816 -36.76359 -35.98977 -34.84006 -33.39144 -32.18823 -31.30393 -31.03074 -28.42564 -28.29650 -27.60143 -25.73292 -24.75861 -23.81026 -22.67586 -21.85149 -21.45356 -20.45863 -20.10037 -18.84454 -18.80414 -17.17580 -17.09196 -16.96984 -16.84888 -16.06019 -15.87378 -15.77677 -15.49635 -15.00614 -14.89717 -14.83625 -14.50566 -14.09808 -13.98402 -13.88342 -13.55802 -13.27420 -13.18070 -13.12343 -12.99172 -12.83243 -12.60506 -12.42565 -12.39940 -12.20529 -12.02417 -11.90285 -11.77580 -11.70858 -11.64876 -11.48435 -11.23996 -10.85963 -10.64799 -10.29378 -10.03267 -9.92583 -8.83610 -7.86465 -5.19257 0.23560 1.34335 1.47860 1.49749 1.58039 1.67694 2.11116 2.22021 2.51665 3.31074 3.33581 3.48875 3.60257 3.62941 3.87224 3.89792 3.95294 3.98303 4.16766 4.18634 4.36175 4.37951 4.45774 4.56246 4.59267 4.60561 4.62140 4.64413 4.72048 4.79352 4.84530 4.86745 4.88913 4.93729 5.09347 5.11352 5.14845 5.16296 5.23480 5.34354 5.44092 5.52974 5.57114 5.60161 5.67064 5.70212 5.81060 6.20238 6.42196 7.03957 7.08480 7.12581 7.78561 8.45409 9.25767 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.003483 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.175851 B = 8037.752668 C = 8749.812041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.117 3.883 3 C -0.153 4.153 4 N -0.255 5.255 5 N -0.290 5.290 6 C -0.009 4.009 7 C -0.185 4.185 8 C -0.062 4.062 9 C 0.594 3.406 10 O -0.559 6.559 11 N -0.685 5.685 12 C 0.173 3.827 13 C -0.104 4.104 14 C -0.110 4.110 15 C -0.125 4.125 16 C 0.155 3.845 17 H 0.055 0.945 18 N -0.607 5.607 19 C -0.231 4.231 20 H 0.084 0.916 21 C -0.062 4.062 22 N -0.947 5.947 23 Si 0.969 3.031 24 H -0.292 1.292 25 H -0.300 1.300 26 H -0.264 1.264 27 C 0.188 3.812 28 C -0.130 4.130 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.122 0.878 33 H 0.042 0.958 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.216 0.784 37 H 0.179 0.821 38 H 0.410 0.590 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.245 0.755 46 H -0.004 1.004 47 H 0.023 0.977 48 H 0.076 0.924 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.816 0.528 1.136 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 C -0.211 4.211 4 N -0.044 5.044 5 N -0.123 5.123 6 C -0.184 4.184 7 C -0.214 4.214 8 C -0.190 4.190 9 C 0.380 3.620 10 O -0.439 6.439 11 N -0.335 5.335 12 C 0.086 3.914 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.165 4.165 16 C 0.048 3.952 17 H 0.073 0.927 18 N -0.331 5.331 19 C -0.360 4.360 20 H 0.102 0.898 21 C -0.255 4.255 22 N -0.595 5.595 23 Si 0.798 3.202 24 H -0.219 1.219 25 H -0.227 1.227 26 H -0.188 1.188 27 C 0.063 3.937 28 C -0.169 4.169 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.139 0.861 33 H 0.061 0.939 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.197 0.803 38 H 0.246 0.754 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.014 0.986 47 H 0.042 0.958 48 H 0.094 0.906 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.636 1.786 0.187 19.718 hybrid contribution 2.208 -0.623 0.683 2.393 sum -17.428 1.163 0.870 17.489 Atomic orbital electron populations 1.22028 0.91069 1.02803 1.04536 1.22247 0.97396 0.94653 0.83905 1.22094 1.00789 0.93639 1.04555 1.46177 1.29796 1.22401 1.06064 1.73081 1.23684 1.25370 0.90117 1.24120 0.98108 0.94944 1.01203 1.22635 1.04402 1.04174 0.90160 1.21510 1.03110 0.98215 0.96168 1.17007 0.79057 0.79043 0.86881 1.90678 1.63613 1.63892 1.25685 1.45529 1.37301 1.39947 1.10681 1.21541 0.91197 0.93076 0.85570 1.22215 0.97761 0.95865 0.98401 1.22308 0.94552 0.95372 1.02579 1.22797 0.96594 0.98780 0.98306 1.22011 0.84189 0.91796 0.97231 0.92735 1.44642 1.01293 1.06236 1.80924 1.19338 0.84222 0.91606 1.40872 0.89815 1.25573 1.01495 0.96273 1.02191 1.70187 1.28318 1.05569 1.55412 0.85191 0.80075 0.78131 0.76770 1.21914 1.22666 1.18849 1.21293 0.92592 0.85525 0.94324 1.23400 0.95977 0.98623 0.98922 0.91218 0.88006 0.92884 0.86080 0.93905 0.87846 0.91314 0.76704 0.80330 0.75351 0.91548 0.91316 0.90226 0.90072 0.91500 0.92710 0.94555 0.98637 0.95841 0.90589 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.29 71.98 0.67 -1.96 16 2 C 0.12 2.74 3.56 44.99 0.16 2.90 16 3 C -0.15 -3.13 9.46 71.98 0.68 -2.45 16 4 N -0.26 -6.90 3.09 -314.29 -0.97 -7.87 16 5 N -0.29 -7.49 11.51 -57.14 -0.66 -8.15 16 6 C -0.01 -0.19 12.03 85.18 1.02 0.83 16 7 C -0.18 -4.36 10.50 22.65 0.24 -4.12 16 8 C -0.06 -1.76 6.96 40.78 0.28 -1.47 16 9 C 0.59 18.55 6.94 86.59 0.60 19.15 16 10 O -0.56 -19.19 12.24 -4.14 -0.05 -19.24 16 11 N -0.68 -20.93 5.22 -419.27 -2.19 -23.12 16 12 C 0.17 5.78 0.73 5.18 0.00 5.79 16 13 C -0.10 -2.95 5.21 31.20 0.16 -2.79 16 14 C -0.11 -2.74 6.84 31.61 0.22 -2.53 16 15 C -0.12 -4.02 6.25 31.80 0.20 -3.82 16 16 C 0.15 5.76 3.63 46.24 0.17 5.93 16 17 H 0.06 1.99 7.99 -2.39 -0.02 1.97 16 18 N -0.61 -29.31 3.06 -660.55 -2.02 -31.33 16 19 C -0.23 -12.31 9.95 84.03 0.84 -11.48 16 20 H 0.08 4.24 7.87 -2.91 -0.02 4.22 16 21 C -0.06 -3.42 5.32 84.86 0.45 -2.97 16 22 N -0.95 -56.45 10.95 21.65 0.24 -56.21 16 23 Si 0.97 44.89 29.58 68.60 2.03 46.92 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 25 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 26 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 27 C 0.19 9.26 5.45 87.41 0.48 9.74 16 28 C -0.13 -5.11 5.87 32.44 0.19 -4.91 16 29 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.12 3.24 5.33 -2.39 -0.01 3.23 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.22 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.18 3.33 7.59 -2.91 -0.02 3.31 16 38 H 0.41 11.32 7.53 -92.71 -0.70 10.63 16 39 H 0.07 1.85 7.40 -2.39 -0.02 1.84 16 40 H 0.07 2.01 7.37 -2.38 -0.02 2.00 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.05 1.98 8.10 -2.39 -0.02 1.96 16 45 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 46 H 0.00 -0.24 8.03 -2.39 -0.02 -0.26 16 47 H 0.02 1.30 7.14 -2.39 -0.02 1.29 16 48 H 0.08 2.89 7.63 -2.39 -0.02 2.87 16 49 H 0.06 2.55 6.80 -2.38 -0.02 2.54 16 Total: -1.00 -67.98 383.32 2.99 -64.99 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.25 Total: 28.17 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 6.36 Total: 5.83 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -5.60 Total: -126.68 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.05 Total: -19.24 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.98 2.99 -64.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990890779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.559 kcal (2) G-P(sol) polarization free energy of solvation -67.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds