Wall clock time and date at job start Tue Mar 31 2020 17:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46946 * 2 1 4 4 N 1.46497 * 109.47554 * 120.00226 * 2 1 3 5 5 C 1.35848 * 126.13745 * 299.97397 * 4 2 1 6 6 N 1.30170 * 109.00694 * 180.02562 * 5 4 2 7 7 C 1.35762 * 108.86582 * 0.02562 * 6 5 4 8 8 C 1.47321 * 126.23626 * 179.97438 * 7 6 5 9 9 O 1.21619 * 120.00097 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00025 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00178 * 180.02562 * 10 8 7 12 12 C 1.51360 * 111.67509 * 68.06009 * 11 10 8 13 13 C 1.55688 * 104.23178 * 83.17589 * 12 11 10 14 14 C 1.56285 * 105.93529 * 7.82753 * 13 12 11 15 15 C 1.50519 * 101.75554 * 24.25788 * 14 13 12 16 16 H 1.08994 * 108.14023 * 66.24736 * 15 14 13 17 17 N 1.42701 * 128.16210 * 198.67914 * 15 14 13 18 18 C 1.36939 * 127.10416 * 331.02661 * 17 15 14 19 19 H 1.08003 * 119.99640 * 16.80875 * 18 17 15 20 20 C 1.38810 * 120.00332 * 196.79925 * 18 17 15 21 21 N 1.31616 * 119.99724 * 30.72646 * 20 18 17 22 22 Si 1.86794 * 120.00167 * 210.72314 * 20 18 17 23 23 H 1.48500 * 109.47461 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47306 * 120.00100 * 22 20 18 25 25 H 1.48502 * 109.47416 * 240.00277 * 22 20 18 26 26 C 1.49290 * 105.79430 * 151.29580 * 17 15 14 27 27 C 1.52138 * 111.49351 * 288.52606 * 11 10 8 28 28 C 1.35377 * 126.13518 * 120.32992 * 4 2 1 29 29 H 1.09003 * 109.46933 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46742 * 299.99176 * 1 2 3 31 31 H 1.08994 * 109.47553 * 59.99325 * 1 2 3 32 32 H 1.08997 * 109.47409 * 240.00492 * 2 1 3 33 33 H 1.09006 * 109.47082 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47416 * 300.00171 * 3 2 1 35 35 H 1.09000 * 109.47058 * 60.00382 * 3 2 1 36 36 H 1.08001 * 125.49581 * 0.02562 * 5 4 2 37 37 H 0.97000 * 120.00041 * 359.97438 * 10 8 7 38 38 H 1.09001 * 110.10060 * 324.75964 * 12 11 10 39 39 H 1.09006 * 111.18054 * 202.12917 * 12 11 10 40 40 H 1.08996 * 110.16136 * 248.70796 * 13 12 11 41 41 H 1.08999 * 110.21985 * 126.97411 * 13 12 11 42 42 H 1.08996 * 110.96903 * 266.14389 * 14 13 12 43 43 H 1.09000 * 110.97429 * 142.37239 * 14 13 12 44 44 H 0.96998 * 120.00026 * 6.00019 * 21 20 18 45 45 H 1.09007 * 110.04877 * 110.36045 * 26 17 15 46 46 H 1.08999 * 110.05047 * 231.83315 * 26 17 15 47 47 H 1.09003 * 111.14479 * 43.77036 * 27 11 10 48 48 H 1.08998 * 111.15084 * 167.95367 * 27 11 10 49 49 H 1.08001 * 126.56743 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7687 -0.3366 2.4837 6 7 2.3645 -1.1785 3.2779 7 6 3.0182 -2.1023 2.5279 8 6 3.8171 -3.2303 3.0374 9 8 4.3574 -3.9932 2.2594 10 7 3.9493 -3.4169 4.3656 11 6 4.7443 -4.5383 4.8722 12 6 6.2172 -4.3600 4.5725 13 6 6.7330 -3.4429 5.7200 14 6 5.5486 -3.3140 6.7315 15 6 4.7644 -4.5668 6.4467 16 1 5.3718 -5.4220 6.7426 17 7 3.4055 -4.8506 6.7771 18 6 2.6919 -4.3553 7.8358 19 1 3.0462 -3.4829 8.3648 20 6 1.5132 -4.9742 8.2287 21 7 1.3643 -6.2714 8.0633 22 14 0.1385 -3.9661 8.9924 23 1 0.5518 -2.5417 9.0670 24 1 -1.0839 -4.0832 8.1573 25 1 -0.1456 -4.4718 10.3594 26 6 2.9244 -5.8043 5.7342 27 6 4.0418 -5.8682 4.6429 28 6 2.8051 -1.7922 1.2166 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 1.8933 -0.5137 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.1721 0.5071 2.7976 37 1 3.5187 -2.8082 4.9861 38 1 6.3464 -3.8702 3.6073 39 1 6.7404 -5.3161 4.5857 40 1 6.9991 -2.4620 5.3262 41 1 7.5952 -3.8980 6.2073 42 1 4.9530 -2.4252 6.5235 43 1 5.9122 -3.3065 7.7591 44 1 2.1080 -6.8087 7.7484 45 1 2.7701 -6.7905 6.1722 46 1 1.9955 -5.4405 5.2951 47 1 3.6143 -5.9195 3.6415 48 1 4.7160 -6.7054 4.8234 49 1 3.1886 -2.3250 0.3590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992007935.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:11 Heat of formation + Delta-G solvation = 39.806007 kcal Electronic energy + Delta-G solvation = -29934.686498 eV Core-core repulsion = 26090.822117 eV Total energy + Delta-G solvation = -3843.864381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -43.22243 -41.92973 -39.38224 -36.91760 -36.43715 -34.44852 -33.64997 -32.10614 -31.63541 -30.43027 -28.44100 -28.20577 -27.53264 -25.85711 -24.64344 -24.01677 -22.29091 -21.57243 -21.41266 -21.12647 -20.01176 -19.02121 -18.53454 -17.44443 -17.34550 -16.67094 -16.33778 -16.07965 -16.03979 -15.61009 -15.53730 -15.12346 -14.98604 -14.86217 -14.78712 -14.60146 -14.13690 -13.91033 -13.57867 -13.41992 -13.18743 -13.12548 -12.99564 -12.55404 -12.51513 -12.39070 -12.27185 -12.16542 -12.16360 -11.93617 -11.84594 -11.60546 -11.42809 -11.28718 -11.17409 -10.82413 -10.74369 -10.40459 -9.99837 -9.56763 -8.98620 -8.29821 -5.29635 0.60960 1.47817 1.56401 1.64594 1.66492 1.81168 2.36688 2.61230 2.63398 2.97186 3.17528 3.46145 3.58067 3.68062 3.78131 3.82266 3.93820 3.99826 4.05447 4.11352 4.18662 4.26410 4.30401 4.42255 4.44688 4.53525 4.65010 4.67176 4.70450 4.82043 4.83813 4.84633 4.88051 4.91564 4.99986 5.03473 5.03611 5.14030 5.15309 5.23728 5.24693 5.34529 5.45872 5.48947 5.72035 5.76866 6.13792 6.29280 6.61397 6.90901 6.92551 7.33804 7.70289 8.38394 9.00891 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.010803 B = 0.004058 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.327935 B = 6898.123690 C = 8437.464004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.120 3.880 3 C -0.159 4.159 4 N -0.443 5.443 5 C 0.194 3.806 6 N -0.502 5.502 7 C -0.100 4.100 8 C 0.597 3.403 9 O -0.578 6.578 10 N -0.680 5.680 11 C 0.140 3.860 12 C -0.106 4.106 13 C -0.102 4.102 14 C -0.109 4.109 15 C 0.144 3.856 16 H 0.015 0.985 17 N -0.595 5.595 18 C -0.335 4.335 19 H 0.065 0.935 20 C -0.077 4.077 21 N -0.942 5.942 22 Si 1.112 2.888 23 H -0.271 1.271 24 H -0.294 1.294 25 H -0.290 1.290 26 C 0.152 3.848 27 C -0.115 4.115 28 C 0.044 3.956 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.239 0.761 37 H 0.404 0.596 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.255 0.745 45 H 0.019 0.981 46 H 0.002 0.998 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 16.913 -19.098 25.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 C -0.217 4.217 4 N -0.124 5.124 5 C -0.091 4.091 6 N -0.221 5.221 7 C -0.228 4.228 8 C 0.385 3.615 9 O -0.459 6.459 10 N -0.328 5.328 11 C 0.053 3.947 12 C -0.144 4.144 13 C -0.140 4.140 14 C -0.147 4.147 15 C 0.035 3.965 16 H 0.032 0.968 17 N -0.319 5.319 18 C -0.463 4.463 19 H 0.082 0.918 20 C -0.274 4.274 21 N -0.585 5.585 22 Si 0.938 3.062 23 H -0.196 1.196 24 H -0.221 1.221 25 H -0.217 1.217 26 C 0.027 3.973 27 C -0.154 4.154 28 C -0.097 4.097 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.255 0.745 37 H 0.240 0.760 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.021 0.979 47 H 0.085 0.915 48 H 0.107 0.893 49 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.264 16.450 -18.184 24.625 hybrid contribution 0.988 -0.368 -0.677 1.253 sum 3.252 16.082 -18.861 24.999 Atomic orbital electron populations 1.22196 0.91959 1.02889 1.04884 1.21940 0.96399 0.94797 0.84951 1.22181 1.01613 0.92999 1.04868 1.45923 1.36280 1.21176 1.09046 1.25613 1.02854 1.01718 0.78866 1.70615 1.12118 1.05037 1.34330 1.20569 1.09319 1.00975 0.91957 1.17253 0.79152 0.83037 0.82073 1.90691 1.50644 1.47520 1.57067 1.45542 1.51285 1.29660 1.06352 1.21497 0.91100 0.85655 0.96494 1.21893 0.92137 1.01313 0.99078 1.22747 0.96936 1.00020 0.94248 1.21809 0.96680 0.96476 0.99750 1.21035 0.86691 0.96997 0.91770 0.96760 1.43769 1.08503 1.53162 1.26461 1.19917 1.07468 1.09310 1.09650 0.91767 1.26952 1.02733 0.96771 1.00915 1.70846 1.36062 1.05220 1.46384 0.82916 0.73649 0.74490 0.75184 1.19553 1.22131 1.21732 1.21971 0.94670 0.92592 0.88027 1.22482 0.97772 0.97404 0.97723 1.22747 0.97058 0.91127 0.98774 0.93153 0.91268 0.87809 0.86483 0.92629 0.87935 0.91206 0.74456 0.76011 0.91481 0.89438 0.90660 0.89460 0.92475 0.91477 0.93475 0.96355 0.97934 0.91520 0.89301 0.78147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.24 71.98 0.67 -0.51 16 2 C 0.12 1.06 3.57 44.99 0.16 1.22 16 3 C -0.16 -0.93 9.24 71.98 0.67 -0.26 16 4 N -0.44 -8.05 2.59 -505.88 -1.31 -9.36 16 5 C 0.19 4.26 11.53 180.10 2.08 6.34 16 6 N -0.50 -16.26 11.01 -188.81 -2.08 -18.34 16 7 C -0.10 -3.35 6.98 40.50 0.28 -3.07 16 8 C 0.60 23.14 7.16 86.63 0.62 23.76 16 9 O -0.58 -23.68 15.03 -4.09 -0.06 -23.74 16 10 N -0.68 -27.25 4.41 -422.78 -1.87 -29.12 16 11 C 0.14 5.48 0.38 4.37 0.00 5.48 16 12 C -0.11 -3.39 6.06 30.99 0.19 -3.20 16 13 C -0.10 -2.89 6.93 32.66 0.23 -2.67 16 14 C -0.11 -3.91 6.45 30.93 0.20 -3.71 16 15 C 0.14 6.21 2.64 46.47 0.12 6.34 16 16 H 0.02 0.67 7.96 -2.39 -0.02 0.65 16 17 N -0.60 -31.32 3.01 -668.44 -2.01 -33.33 16 18 C -0.34 -19.41 10.01 84.03 0.84 -18.57 16 19 H 0.06 3.68 7.99 -2.91 -0.02 3.66 16 20 C -0.08 -4.60 5.15 84.86 0.44 -4.16 16 21 N -0.94 -60.05 13.01 21.65 0.28 -59.76 16 22 Si 1.11 53.58 30.01 68.60 2.06 55.64 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 26 C 0.15 7.86 5.84 86.99 0.51 8.37 16 27 C -0.12 -4.84 6.20 31.46 0.19 -4.65 16 28 C 0.04 1.09 11.22 83.72 0.94 2.03 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.51 7.94 -2.39 -0.02 0.49 16 31 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.12 0.74 8.07 -2.39 -0.02 0.72 16 33 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.07 0.41 7.94 -2.39 -0.02 0.39 16 36 H 0.24 3.23 8.06 -2.91 -0.02 3.21 16 37 H 0.40 17.48 7.45 -92.71 -0.69 16.79 16 38 H 0.07 2.24 6.84 -2.39 -0.02 2.22 16 39 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.06 2.16 7.28 -2.39 -0.02 2.14 16 43 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 44 H 0.25 16.52 6.06 -92.71 -0.56 15.96 16 45 H 0.02 1.04 6.16 -2.38 -0.01 1.02 16 46 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 47 H 0.07 2.86 7.19 -2.39 -0.02 2.84 16 48 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 49 H 0.20 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -78.71 387.40 3.60 -75.11 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.46 Total: 30.16 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 8.13 Total: 12.75 kcal Atomic # 7 Polarization: -142.93 SS G_CDS: -6.98 Total: -149.91 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.06 Total: -23.74 kcal Atomic # 14 Polarization: 53.58 SS G_CDS: 2.06 Total: 55.64 kcal Total: -78.71 3.60 -75.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992007935.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.916 kcal (2) G-P(sol) polarization free energy of solvation -78.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds