Wall clock time and date at job start Tue Mar 31 2020 16:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47165 * 2 1 4 4 N 1.46496 * 109.47484 * 119.99959 * 2 1 3 5 5 C 1.34254 * 125.75898 * 274.98124 * 4 2 1 6 6 C 1.38048 * 107.42037 * 179.97438 * 5 4 2 7 7 C 1.47425 * 126.41140 * 180.02562 * 6 5 4 8 8 O 1.21596 * 120.00575 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99794 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00188 * 179.97438 * 9 7 6 11 11 C 1.51227 * 111.07068 * 68.33364 * 10 9 7 12 12 C 1.55041 * 104.92500 * 84.45259 * 11 10 9 13 13 C 1.56284 * 105.92046 * 6.65498 * 12 11 10 14 14 C 1.50519 * 101.75352 * 24.64629 * 13 12 11 15 15 H 1.08998 * 108.13799 * 66.90453 * 14 13 12 16 16 N 1.42703 * 127.78450 * 198.90011 * 14 13 12 17 17 C 1.36936 * 127.10620 * 331.50904 * 16 14 13 18 18 H 1.08000 * 119.99759 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00165 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00418 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00193 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47248 * 89.99371 * 21 19 17 23 23 H 1.48495 * 109.47453 * 210.00078 * 21 19 17 24 24 H 1.48506 * 109.46836 * 329.99902 * 21 19 17 25 25 C 1.49290 * 105.79411 * 151.49594 * 16 14 13 26 26 C 1.52138 * 111.08982 * 288.30146 * 10 9 7 27 27 C 1.41285 * 107.16872 * 359.97438 * 6 5 4 28 28 N 1.30454 * 108.02367 * 0.02562 * 27 6 5 29 29 H 1.09003 * 109.47466 * 299.99654 * 1 2 3 30 30 H 1.09005 * 109.47609 * 59.99759 * 1 2 3 31 31 H 1.08999 * 109.47334 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47466 * 240.00346 * 2 1 3 33 33 H 1.08996 * 109.47183 * 300.00680 * 3 2 1 34 34 H 1.09003 * 109.46646 * 59.99844 * 3 2 1 35 35 H 1.09001 * 109.47335 * 179.97438 * 3 2 1 36 36 H 1.08007 * 126.28855 * 359.97438 * 5 4 2 37 37 H 0.97002 * 119.99810 * 359.97438 * 9 7 6 38 38 H 1.09008 * 110.40331 * 202.66777 * 11 10 9 39 39 H 1.08995 * 110.40930 * 325.10575 * 11 10 9 40 40 H 1.09007 * 109.84540 * 247.71876 * 12 11 10 41 41 H 1.09000 * 110.55324 * 125.97113 * 12 11 10 42 42 H 1.08994 * 110.97503 * 266.52874 * 13 12 11 43 43 H 1.08998 * 111.00376 * 142.76879 * 13 12 11 44 44 H 0.96999 * 120.00361 * 180.02562 * 20 19 17 45 45 H 1.08997 * 110.05770 * 110.59726 * 25 16 14 46 46 H 1.09000 * 110.04882 * 232.02435 * 25 16 14 47 47 H 1.09004 * 111.14421 * 43.91799 * 26 10 9 48 48 H 1.09000 * 111.14821 * 168.13783 * 26 10 9 49 49 H 1.08002 * 125.98702 * 180.26893 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1907 -0.1362 2.4067 6 6 2.6626 -1.1225 3.2494 7 6 2.9936 -0.9684 4.6778 8 8 2.8577 0.1112 5.2204 9 7 3.4469 -2.0244 5.3821 10 6 3.7764 -1.8712 6.8014 11 6 2.5319 -1.6270 7.6252 12 6 1.9635 -3.0394 7.9182 13 6 3.0267 -4.0498 7.3787 14 6 4.2849 -3.2250 7.4252 15 1 4.5216 -3.0257 8.4703 16 7 5.5085 -3.4566 6.7283 17 6 6.0127 -4.6636 6.3232 18 1 5.4663 -5.5727 6.5264 19 6 7.2261 -4.7186 5.6513 20 7 7.8918 -3.6106 5.4031 21 14 7.9136 -6.3650 5.0979 22 1 7.4249 -6.6707 3.7294 23 1 9.3973 -6.3051 5.0919 24 1 7.4649 -7.4281 6.0328 25 6 6.1252 -2.1113 6.5319 26 6 5.0504 -1.0598 6.9831 27 6 2.7677 -2.3074 2.4871 28 7 2.3829 -2.0396 1.2697 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6765 1.9564 -0.8899 34 1 1.6765 1.9563 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.9960 0.8924 2.6723 37 1 3.5549 -2.8857 4.9493 38 1 2.7873 -1.1306 8.5614 39 1 1.8139 -1.0314 7.0616 40 1 1.0175 -3.1737 7.3936 41 1 1.8215 -3.1800 8.9898 42 1 2.7953 -4.3512 6.3571 43 1 3.1060 -4.9192 8.0314 44 1 8.7395 -3.6490 4.9332 45 1 7.0181 -2.0156 7.1496 46 1 6.3803 -1.9669 5.4820 47 1 5.0586 -0.1886 6.3279 48 1 5.1853 -0.7675 8.0245 49 1 3.1036 -3.2676 2.8498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992412552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:39 Heat of formation + Delta-G solvation = 76.970783 kcal Electronic energy + Delta-G solvation = -30000.841188 eV Core-core repulsion = 26158.588393 eV Total energy + Delta-G solvation = -3842.252795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 4.51 seconds Orbital eigenvalues (eV) -41.35633 -40.20660 -37.71990 -35.92399 -34.37601 -32.90603 -31.67921 -30.40788 -30.29677 -29.34978 -27.71631 -26.89146 -25.75896 -24.09654 -23.69242 -22.20532 -20.55393 -20.32816 -19.88457 -19.50532 -18.48743 -17.77240 -16.43517 -15.79446 -15.65484 -15.55312 -15.03609 -14.64221 -14.57008 -14.34496 -14.07274 -13.88427 -13.69282 -13.37901 -13.05505 -12.84025 -12.62561 -12.51528 -12.45231 -12.26913 -11.82010 -11.76375 -11.57244 -11.35033 -11.29857 -10.97750 -10.94367 -10.85340 -10.73164 -10.41319 -10.24770 -9.96617 -9.90217 -9.64602 -9.51854 -9.45226 -9.04815 -8.64187 -8.62024 -8.24204 -6.83347 -5.72379 -3.06913 1.68965 2.28813 2.39343 3.39444 3.45247 3.46973 3.81574 3.95215 4.19625 4.47835 4.48477 4.66418 4.69831 4.73213 4.88938 5.06989 5.17573 5.26477 5.27418 5.31380 5.40737 5.44071 5.50976 5.52242 5.66011 5.71882 5.73695 5.78093 5.88753 5.94169 6.02756 6.08706 6.21678 6.31430 6.39900 6.44300 6.50944 6.54008 6.58094 6.73801 6.87861 6.89378 6.97926 7.33762 7.56007 7.63997 7.64438 7.81536 8.22592 8.25659 8.89580 9.15631 9.82330 10.51880 11.39656 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.003986 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.431472 B = 7022.468314 C = 8351.266784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.152 3.848 3 C -0.168 4.168 4 N -0.361 5.361 5 C 0.121 3.879 6 C -0.283 4.283 7 C 0.593 3.407 8 O -0.562 6.562 9 N -0.685 5.685 10 C 0.136 3.864 11 C -0.111 4.111 12 C -0.116 4.116 13 C -0.114 4.114 14 C 0.157 3.843 15 H 0.022 0.978 16 N -0.584 5.584 17 C -0.231 4.231 18 H 0.079 0.921 19 C -0.003 4.003 20 N -0.917 5.917 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.179 3.821 26 C -0.139 4.139 27 C 0.086 3.914 28 N -0.301 5.301 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.182 0.818 37 H 0.401 0.599 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.252 0.748 45 H 0.033 0.967 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.900 7.927 -6.982 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 C -0.226 4.226 4 N -0.141 5.141 5 C -0.030 4.030 6 C -0.298 4.298 7 C 0.381 3.619 8 O -0.443 6.443 9 N -0.334 5.334 10 C 0.048 3.952 11 C -0.150 4.150 12 C -0.155 4.155 13 C -0.153 4.153 14 C 0.047 3.953 15 H 0.040 0.960 16 N -0.308 5.308 17 C -0.359 4.359 18 H 0.097 0.903 19 C -0.200 4.200 20 N -0.564 5.564 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.056 3.944 26 C -0.178 4.178 27 C -0.102 4.102 28 N -0.121 5.121 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.199 0.801 37 H 0.237 0.763 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -14.981 8.153 -8.005 18.841 hybrid contribution 0.771 -0.987 0.262 1.279 sum -14.210 7.166 -7.743 17.698 Atomic orbital electron populations 1.22247 0.93451 1.03441 1.03184 1.21332 0.94913 0.92875 0.85788 1.22241 1.02695 0.93840 1.03830 1.48710 1.49321 1.07665 1.08358 1.22775 0.96231 0.99408 0.84604 1.20406 1.18621 0.94429 0.96333 1.17149 0.76563 0.83986 0.84245 1.90697 1.55805 1.26444 1.71349 1.45470 1.65199 1.12465 1.10314 1.21468 0.92982 1.00471 0.80320 1.21750 0.97176 0.96611 0.99463 1.22703 0.98069 0.94443 1.00239 1.21842 0.94901 0.97550 1.01005 1.20852 0.87697 0.91718 0.95072 0.96049 1.43664 1.17855 1.03269 1.65972 1.19002 1.02444 0.83797 1.30640 0.90323 1.24777 0.97419 0.96961 1.00849 1.69917 1.15914 1.24924 1.45625 0.86189 0.78240 0.83171 0.78562 1.21609 1.21786 1.20743 1.22146 0.91400 0.80318 1.00563 1.22910 0.95372 0.98795 1.00734 1.24148 0.96600 0.99220 0.90216 1.77160 1.21528 0.92681 1.20691 0.91730 0.90390 0.91493 0.87725 0.89842 0.91259 0.91181 0.80098 0.76277 0.91406 0.91121 0.92382 0.92021 0.91638 0.91888 0.93727 0.94874 0.91599 0.91391 0.91733 0.79327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 9.52 37.15 0.35 -0.78 16 2 C 0.15 1.28 3.91 -67.93 -0.27 1.01 16 3 C -0.17 -1.08 8.82 37.16 0.33 -0.75 16 4 N -0.36 -4.48 3.50 -54.31 -0.19 -4.67 16 5 C 0.12 1.61 10.39 -16.56 -0.17 1.44 16 6 C -0.28 -4.48 6.13 -105.07 -0.64 -5.12 16 7 C 0.59 10.72 7.12 -12.52 -0.09 10.63 16 8 O -0.56 -11.30 15.05 5.28 0.08 -11.22 16 9 N -0.69 -12.39 4.35 -47.63 -0.21 -12.60 16 10 C 0.14 2.51 0.42 -130.70 -0.05 2.46 16 11 C -0.11 -1.80 6.01 -26.55 -0.16 -1.95 16 12 C -0.12 -1.67 6.91 -23.89 -0.17 -1.84 16 13 C -0.11 -1.91 6.46 -26.21 -0.17 -2.08 16 14 C 0.16 3.13 2.61 -68.72 -0.18 2.95 16 15 H 0.02 0.46 7.98 -51.93 -0.41 0.05 16 16 N -0.58 -14.06 3.10 -162.20 -0.50 -14.57 16 17 C -0.23 -6.07 10.28 -15.06 -0.15 -6.22 16 18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 19 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 20 N -0.92 -26.29 10.55 55.49 0.59 -25.70 16 21 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.18 4.32 5.34 -0.33 0.00 4.32 16 26 C -0.14 -2.82 6.26 -25.01 -0.16 -2.97 16 27 C 0.09 1.31 11.50 -16.98 -0.20 1.11 16 28 N -0.30 -4.51 12.50 30.86 0.39 -4.13 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.43 7.13 -51.93 -0.37 0.06 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.18 2.03 7.23 -52.48 -0.38 1.65 16 37 H 0.40 7.29 6.75 -40.82 -0.28 7.02 16 38 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 39 H 0.07 1.20 6.84 -51.93 -0.36 0.84 16 40 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.09 7.38 -51.93 -0.38 0.71 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.03 0.87 7.98 -51.93 -0.41 0.46 16 46 H 0.07 1.78 7.05 -51.93 -0.37 1.41 16 47 H 0.07 1.42 7.17 -51.93 -0.37 1.05 16 48 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.19 2.62 7.50 -52.49 -0.39 2.23 16 LS Contribution 385.82 15.07 5.81 5.81 Total: -1.00 -31.87 385.82 -8.80 -40.67 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.92 Total: 7.82 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.82 Total: 2.03 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.07 Total: -61.66 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.87 -8.80 -40.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992412552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.644 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.51 seconds