Wall clock time and date at job start Tue Mar 31 2020 16:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47165 * 2 1 4 4 N 1.46496 * 109.47484 * 119.99959 * 2 1 3 5 5 C 1.34254 * 125.75898 * 274.98124 * 4 2 1 6 6 C 1.38048 * 107.42037 * 179.97438 * 5 4 2 7 7 C 1.47425 * 126.41140 * 180.02562 * 6 5 4 8 8 O 1.21596 * 120.00575 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99794 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00188 * 179.97438 * 9 7 6 11 11 C 1.51227 * 111.07068 * 68.33364 * 10 9 7 12 12 C 1.55041 * 104.92500 * 84.45259 * 11 10 9 13 13 C 1.56284 * 105.92046 * 6.65498 * 12 11 10 14 14 C 1.50519 * 101.75352 * 24.64629 * 13 12 11 15 15 H 1.08998 * 108.13799 * 66.90453 * 14 13 12 16 16 N 1.42703 * 127.78450 * 198.90011 * 14 13 12 17 17 C 1.36936 * 127.10620 * 331.50904 * 16 14 13 18 18 H 1.08000 * 119.99759 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00165 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00418 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00193 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47248 * 89.99371 * 21 19 17 23 23 H 1.48495 * 109.47453 * 210.00078 * 21 19 17 24 24 H 1.48506 * 109.46836 * 329.99902 * 21 19 17 25 25 C 1.49290 * 105.79411 * 151.49594 * 16 14 13 26 26 C 1.52138 * 111.08982 * 288.30146 * 10 9 7 27 27 C 1.41285 * 107.16872 * 359.97438 * 6 5 4 28 28 N 1.30454 * 108.02367 * 0.02562 * 27 6 5 29 29 H 1.09003 * 109.47466 * 299.99654 * 1 2 3 30 30 H 1.09005 * 109.47609 * 59.99759 * 1 2 3 31 31 H 1.08999 * 109.47334 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47466 * 240.00346 * 2 1 3 33 33 H 1.08996 * 109.47183 * 300.00680 * 3 2 1 34 34 H 1.09003 * 109.46646 * 59.99844 * 3 2 1 35 35 H 1.09001 * 109.47335 * 179.97438 * 3 2 1 36 36 H 1.08007 * 126.28855 * 359.97438 * 5 4 2 37 37 H 0.97002 * 119.99810 * 359.97438 * 9 7 6 38 38 H 1.09008 * 110.40331 * 202.66777 * 11 10 9 39 39 H 1.08995 * 110.40930 * 325.10575 * 11 10 9 40 40 H 1.09007 * 109.84540 * 247.71876 * 12 11 10 41 41 H 1.09000 * 110.55324 * 125.97113 * 12 11 10 42 42 H 1.08994 * 110.97503 * 266.52874 * 13 12 11 43 43 H 1.08998 * 111.00376 * 142.76879 * 13 12 11 44 44 H 0.96999 * 120.00361 * 180.02562 * 20 19 17 45 45 H 1.08997 * 110.05770 * 110.59726 * 25 16 14 46 46 H 1.09000 * 110.04882 * 232.02435 * 25 16 14 47 47 H 1.09004 * 111.14421 * 43.91799 * 26 10 9 48 48 H 1.09000 * 111.14821 * 168.13783 * 26 10 9 49 49 H 1.08002 * 125.98702 * 180.26893 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1907 -0.1362 2.4067 6 6 2.6626 -1.1225 3.2494 7 6 2.9936 -0.9684 4.6778 8 8 2.8577 0.1112 5.2204 9 7 3.4469 -2.0244 5.3821 10 6 3.7764 -1.8712 6.8014 11 6 2.5319 -1.6270 7.6252 12 6 1.9635 -3.0394 7.9182 13 6 3.0267 -4.0498 7.3787 14 6 4.2849 -3.2250 7.4252 15 1 4.5216 -3.0257 8.4703 16 7 5.5085 -3.4566 6.7283 17 6 6.0127 -4.6636 6.3232 18 1 5.4663 -5.5727 6.5264 19 6 7.2261 -4.7186 5.6513 20 7 7.8918 -3.6106 5.4031 21 14 7.9136 -6.3650 5.0979 22 1 7.4249 -6.6707 3.7294 23 1 9.3973 -6.3051 5.0919 24 1 7.4649 -7.4281 6.0328 25 6 6.1252 -2.1113 6.5319 26 6 5.0504 -1.0598 6.9831 27 6 2.7677 -2.3074 2.4871 28 7 2.3829 -2.0396 1.2697 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6765 1.9564 -0.8899 34 1 1.6765 1.9563 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.9960 0.8924 2.6723 37 1 3.5549 -2.8857 4.9493 38 1 2.7873 -1.1306 8.5614 39 1 1.8139 -1.0314 7.0616 40 1 1.0175 -3.1737 7.3936 41 1 1.8215 -3.1800 8.9898 42 1 2.7953 -4.3512 6.3571 43 1 3.1060 -4.9192 8.0314 44 1 8.7395 -3.6490 4.9332 45 1 7.0181 -2.0156 7.1496 46 1 6.3803 -1.9669 5.4820 47 1 5.0586 -0.1886 6.3279 48 1 5.1853 -0.7675 8.0245 49 1 3.1036 -3.2676 2.8498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992412552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:35 Heat of formation + Delta-G solvation = 57.768946 kcal Electronic energy + Delta-G solvation = -30001.673842 eV Core-core repulsion = 26158.588393 eV Total energy + Delta-G solvation = -3843.085449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 3.71 seconds Orbital eigenvalues (eV) -42.48138 -41.68661 -39.17753 -36.71482 -36.11591 -34.35024 -33.52114 -31.80679 -31.44346 -30.67570 -28.51062 -28.24972 -27.28335 -25.93223 -24.83458 -23.32806 -22.17988 -21.54650 -21.18522 -20.85814 -19.91810 -18.94547 -18.30101 -17.32192 -16.89881 -16.51586 -16.36961 -16.09285 -15.84602 -15.72290 -15.62370 -15.12998 -15.03070 -14.70610 -14.12288 -14.03726 -13.87860 -13.78258 -13.47200 -13.20565 -13.09383 -13.01448 -12.92235 -12.82353 -12.59690 -12.40343 -12.32313 -12.15139 -12.05873 -12.01186 -11.88519 -11.75254 -11.51217 -11.30510 -10.98102 -10.69940 -10.57260 -10.54887 -9.93065 -9.56327 -8.83031 -7.80337 -5.15579 0.58314 1.17030 1.36927 1.49699 1.50009 1.58462 2.43807 2.53471 2.61165 3.15089 3.39287 3.42363 3.76774 3.77997 3.86368 3.92406 3.95389 4.06064 4.14442 4.17014 4.33045 4.37527 4.45145 4.47898 4.62046 4.63029 4.64883 4.70732 4.75823 4.79683 4.86694 4.88780 4.99389 5.04437 5.12619 5.14614 5.16452 5.19888 5.28738 5.33426 5.39827 5.53876 5.60714 5.65212 5.73915 5.89715 5.93145 6.21896 6.52003 6.81966 7.08247 7.46780 7.81063 8.53716 9.31390 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.003986 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.431472 B = 7022.468314 C = 8351.266784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.140 3.860 3 C -0.163 4.163 4 N -0.350 5.350 5 C 0.134 3.866 6 C -0.312 4.312 7 C 0.594 3.406 8 O -0.586 6.586 9 N -0.687 5.687 10 C 0.142 3.858 11 C -0.106 4.106 12 C -0.102 4.102 13 C -0.110 4.110 14 C 0.145 3.855 15 H 0.019 0.981 16 N -0.597 5.597 17 C -0.229 4.229 18 H 0.089 0.911 19 C -0.061 4.061 20 N -0.950 5.950 21 Si 0.971 3.029 22 H -0.287 1.287 23 H -0.302 1.302 24 H -0.268 1.268 25 C 0.192 3.808 26 C -0.128 4.128 27 C 0.079 3.921 28 N -0.321 5.321 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.205 0.795 37 H 0.400 0.600 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.244 0.756 45 H -0.001 1.001 46 H 0.029 0.971 47 H 0.058 0.942 48 H 0.080 0.920 49 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.515 8.073 -7.272 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 C -0.221 4.221 4 N -0.130 5.130 5 C -0.019 4.019 6 C -0.327 4.327 7 C 0.383 3.617 8 O -0.468 6.468 9 N -0.335 5.335 10 C 0.054 3.946 11 C -0.145 4.145 12 C -0.140 4.140 13 C -0.148 4.148 14 C 0.036 3.964 15 H 0.036 0.964 16 N -0.320 5.320 17 C -0.358 4.358 18 H 0.106 0.894 19 C -0.254 4.254 20 N -0.599 5.599 21 Si 0.800 3.200 22 H -0.214 1.214 23 H -0.229 1.229 24 H -0.193 1.193 25 C 0.068 3.932 26 C -0.167 4.167 27 C -0.108 4.108 28 N -0.141 5.141 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.221 0.779 37 H 0.235 0.765 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.053 0.947 45 H 0.017 0.983 46 H 0.048 0.952 47 H 0.077 0.923 48 H 0.099 0.901 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -17.646 8.278 -8.300 21.185 hybrid contribution 1.563 -0.962 0.295 1.859 sum -16.083 7.316 -8.006 19.398 Atomic orbital electron populations 1.22219 0.91842 1.02892 1.04672 1.21806 0.96158 0.93704 0.84247 1.22259 1.01818 0.92506 1.05549 1.49122 1.47786 1.06848 1.09209 1.23080 0.94522 0.99832 0.84428 1.20344 1.21108 0.95657 0.95616 1.17401 0.75863 0.83415 0.85014 1.90669 1.57037 1.27095 1.72048 1.45484 1.65239 1.12549 1.10264 1.21461 0.93400 0.98659 0.81072 1.21738 0.95484 0.98011 0.99261 1.22638 0.97601 0.91967 1.01828 1.21854 0.93520 0.98070 1.01403 1.21070 0.87391 0.93692 0.94221 0.96380 1.43772 1.19506 1.02553 1.66131 1.19383 1.02192 0.84956 1.29240 0.89351 1.25528 0.98170 0.99855 1.01857 1.70138 1.15956 1.26841 1.46985 0.85189 0.76656 0.79916 0.78238 1.21401 1.22934 1.19324 1.21804 0.91703 0.82058 0.97684 1.22765 0.95318 0.97348 1.01248 1.24216 0.96780 0.99412 0.90357 1.77102 1.22096 0.94370 1.20536 0.91683 0.87442 0.93029 0.87465 0.86958 0.90732 0.92531 0.77870 0.76477 0.90223 0.91636 0.90697 0.89690 0.91843 0.91063 0.94717 0.98264 0.95241 0.92349 0.90109 0.79095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.52 71.98 0.69 -1.10 16 2 C 0.14 2.08 3.91 44.99 0.18 2.26 16 3 C -0.16 -1.69 8.82 71.98 0.64 -1.06 16 4 N -0.35 -8.32 3.50 -325.75 -1.14 -9.46 16 5 C 0.13 3.45 10.39 84.28 0.88 4.32 16 6 C -0.31 -9.88 6.13 -20.15 -0.12 -10.00 16 7 C 0.59 21.51 7.12 86.66 0.62 22.13 16 8 O -0.59 -23.39 15.05 -4.02 -0.06 -23.45 16 9 N -0.69 -24.93 4.35 -422.88 -1.84 -26.77 16 10 C 0.14 5.18 0.42 4.33 0.00 5.18 16 11 C -0.11 -3.20 6.01 30.71 0.18 -3.01 16 12 C -0.10 -2.60 6.91 32.43 0.22 -2.38 16 13 C -0.11 -3.44 6.46 30.93 0.20 -3.24 16 14 C 0.15 5.70 2.61 46.47 0.12 5.82 16 15 H 0.02 0.76 7.98 -2.39 -0.02 0.74 16 16 N -0.60 -29.21 3.10 -667.08 -2.07 -31.28 16 17 C -0.23 -12.15 10.28 84.03 0.86 -11.28 16 18 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 19 C -0.06 -3.38 5.49 84.86 0.47 -2.91 16 20 N -0.95 -56.79 10.55 21.65 0.23 -56.57 16 21 Si 0.97 45.10 29.55 68.60 2.03 47.12 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 C 0.19 9.67 5.34 87.24 0.47 10.14 16 26 C -0.13 -5.25 6.26 31.71 0.20 -5.05 16 27 C 0.08 2.44 11.50 85.65 0.99 3.43 16 28 N -0.32 -9.54 12.50 -56.27 -0.70 -10.24 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.07 0.71 7.13 -2.39 -0.02 0.70 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.20 4.18 7.23 -2.91 -0.02 4.16 16 37 H 0.40 14.74 6.75 -92.71 -0.63 14.12 16 38 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.06 2.08 6.84 -2.39 -0.02 2.06 16 40 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.06 2.01 7.38 -2.39 -0.02 1.99 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 45 H 0.00 -0.05 7.98 -2.39 -0.02 -0.07 16 46 H 0.03 1.68 7.05 -2.39 -0.02 1.66 16 47 H 0.06 2.51 7.17 -2.39 -0.02 2.49 16 48 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 49 H 0.19 5.50 7.50 -2.91 -0.02 5.48 16 Total: -1.00 -70.98 385.82 3.34 -67.64 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.32 Total: 29.76 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 6.58 Total: 13.25 kcal Atomic # 7 Polarization: -128.80 SS G_CDS: -5.52 Total: -134.32 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.06 Total: -23.45 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -70.98 3.34 -67.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992412552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.408 kcal (2) G-P(sol) polarization free energy of solvation -70.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.71 seconds