Wall clock time and date at job start Tue Mar 31 2020 16:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47198 * 2 1 4 4 N 1.46502 * 109.47267 * 120.00281 * 2 1 3 5 5 C 1.34259 * 125.74931 * 275.26846 * 4 2 1 6 6 C 1.38049 * 107.41354 * 180.14621 * 5 4 2 7 7 C 1.47431 * 126.41659 * 179.87385 * 6 5 4 8 8 O 1.21603 * 119.99546 * 359.70727 * 7 6 5 9 9 N 1.34768 * 120.00209 * 179.70864 * 7 6 5 10 10 C 1.46495 * 120.00385 * 179.97438 * 9 7 6 11 11 C 1.51225 * 111.06980 * 281.62477 * 10 9 7 12 12 C 1.55693 * 104.60421 * 275.45482 * 11 10 9 13 13 C 1.56278 * 105.93609 * 352.74847 * 12 11 10 14 14 C 1.50734 * 101.76307 * 335.53349 * 13 12 11 15 15 H 1.08998 * 108.20786 * 293.25913 * 14 13 12 16 16 N 1.42701 * 127.97599 * 160.93271 * 14 13 12 17 17 C 1.36937 * 127.10004 * 28.89649 * 16 14 13 18 18 H 1.07998 * 119.99941 * 352.43020 * 17 16 14 19 19 C 1.38813 * 119.99761 * 172.15030 * 17 16 14 20 20 N 1.31609 * 120.00242 * 5.68433 * 19 17 16 21 21 Si 1.86800 * 119.99689 * 185.68675 * 19 17 16 22 22 H 1.48499 * 109.47357 * 94.96010 * 21 19 17 23 23 H 1.48504 * 109.47058 * 214.96029 * 21 19 17 24 24 H 1.48503 * 109.47470 * 334.95596 * 21 19 17 25 25 C 1.49293 * 105.79612 * 208.63294 * 16 14 13 26 26 C 1.52143 * 111.08500 * 61.01415 * 10 9 7 27 27 C 1.41287 * 107.17074 * 359.60540 * 6 5 4 28 28 N 1.30452 * 108.02125 * 0.24238 * 27 6 5 29 29 H 1.09000 * 109.47057 * 299.99568 * 1 2 3 30 30 H 1.09000 * 109.47131 * 60.00182 * 1 2 3 31 31 H 1.08999 * 109.46805 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47057 * 240.00432 * 2 1 3 33 33 H 1.09001 * 109.47175 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47533 * 300.00253 * 3 2 1 35 35 H 1.09005 * 109.46560 * 59.99826 * 3 2 1 36 36 H 1.07998 * 126.29735 * 359.97438 * 5 4 2 37 37 H 0.97006 * 120.00082 * 0.02562 * 9 7 6 38 38 H 1.09004 * 110.40603 * 34.23848 * 11 10 9 39 39 H 1.08998 * 110.40955 * 156.55603 * 11 10 9 40 40 H 1.09004 * 110.15225 * 111.86776 * 12 11 10 41 41 H 1.08996 * 110.15645 * 233.62903 * 12 11 10 42 42 H 1.09004 * 110.97105 * 93.86110 * 13 12 11 43 43 H 1.09004 * 110.96804 * 217.58413 * 13 12 11 44 44 H 0.96999 * 120.00360 * 180.02562 * 20 19 17 45 45 H 1.08996 * 110.04891 * 128.16529 * 25 16 14 46 46 H 1.08998 * 110.04761 * 249.64176 * 25 16 14 47 47 H 1.08998 * 111.14752 * 316.72718 * 26 10 9 48 48 H 1.08992 * 111.18723 * 192.51547 * 26 10 9 49 49 H 1.08004 * 125.99143 * 180.20815 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1855 -0.1375 2.4080 6 6 2.6631 -1.1223 3.2493 7 6 2.9944 -0.9683 4.6777 8 8 2.8579 0.1113 5.2204 9 7 3.4486 -2.0239 5.3817 10 6 3.7783 -1.8708 6.8009 11 6 5.1252 -1.2063 6.9774 12 6 6.1540 -2.3701 6.8717 13 6 5.3109 -3.6851 6.8237 14 6 4.0369 -3.2583 7.5071 15 1 4.2647 -3.0493 8.5523 16 7 2.7561 -3.8846 7.4473 17 6 2.4952 -5.2144 7.2498 18 1 3.2987 -5.8907 6.9979 19 6 1.1990 -5.6940 7.3792 20 7 0.2043 -4.8561 7.5808 21 14 0.8666 -7.5288 7.2673 22 1 0.8412 -8.1115 8.6330 23 1 -0.4447 -7.7550 6.6082 24 1 1.9390 -8.1786 6.4717 25 6 1.7595 -2.7919 7.6508 26 6 2.5569 -1.4493 7.6042 27 6 2.7690 -2.3071 2.4869 28 7 2.3838 -2.0394 1.2696 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.9860 0.8898 2.6749 37 1 3.5578 -2.8850 4.9486 38 1 5.2951 -0.4756 6.1865 39 1 5.1882 -0.7286 7.9551 40 1 6.7437 -2.2684 5.9605 41 1 6.8073 -2.3743 7.7441 42 1 5.1219 -3.9900 5.7944 43 1 5.8011 -4.4833 7.3812 44 1 -0.7014 -5.1913 7.6716 45 1 1.0149 -2.8121 6.8551 46 1 1.2741 -2.9047 8.6203 47 1 1.9928 -0.6746 7.0848 48 1 2.8375 -1.1234 8.6057 49 1 3.1098 -3.2661 2.8483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992412554.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:05 Heat of formation + Delta-G solvation = 77.283403 kcal Electronic energy + Delta-G solvation = -29987.538416 eV Core-core repulsion = 26145.299177 eV Total energy + Delta-G solvation = -3842.239239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.36014 -40.18488 -37.71333 -35.92088 -34.37592 -32.88393 -31.69932 -30.40939 -30.30033 -29.34423 -27.70391 -26.88343 -25.77177 -24.09253 -23.67180 -22.21485 -20.57658 -20.30244 -19.87672 -19.51065 -18.51721 -17.78428 -16.41883 -15.80471 -15.64749 -15.55521 -15.02276 -14.60769 -14.55341 -14.27794 -14.24824 -13.86784 -13.65172 -13.41983 -12.99700 -12.89730 -12.61665 -12.46733 -12.43915 -12.24650 -11.86888 -11.75573 -11.57017 -11.33838 -11.27676 -10.97100 -10.94842 -10.86901 -10.75698 -10.41204 -10.22088 -9.95549 -9.91234 -9.64043 -9.52413 -9.48394 -8.98784 -8.62178 -8.59939 -8.24596 -6.79438 -5.72428 -3.05673 1.68876 2.28340 2.38552 3.40358 3.45699 3.47825 3.79439 3.95678 4.19481 4.48852 4.49115 4.66590 4.69043 4.73535 4.87700 5.08126 5.18849 5.26799 5.28506 5.29247 5.40990 5.43120 5.50191 5.51388 5.66759 5.72276 5.76201 5.78443 5.89532 5.92497 6.00905 6.07704 6.20782 6.34095 6.36616 6.42812 6.49221 6.53049 6.57630 6.77124 6.87563 6.91954 6.98410 7.33613 7.62224 7.63127 7.63695 7.82565 8.23507 8.24306 8.89163 9.16951 9.83863 10.54447 11.40829 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.004025 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.645834 B = 6954.558772 C = 8386.767642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.153 3.847 3 C -0.167 4.167 4 N -0.360 5.360 5 C 0.121 3.879 6 C -0.283 4.283 7 C 0.595 3.405 8 O -0.560 6.560 9 N -0.685 5.685 10 C 0.134 3.866 11 C -0.112 4.112 12 C -0.116 4.116 13 C -0.115 4.115 14 C 0.158 3.842 15 H 0.023 0.977 16 N -0.583 5.583 17 C -0.232 4.232 18 H 0.078 0.922 19 C -0.002 4.002 20 N -0.915 5.915 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.182 3.818 26 C -0.142 4.142 27 C 0.085 3.915 28 N -0.302 5.302 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.182 0.818 37 H 0.398 0.602 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.252 0.748 45 H 0.056 0.944 46 H 0.037 0.963 47 H 0.077 0.923 48 H 0.062 0.938 49 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.222 11.440 -12.832 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.051 3.949 3 C -0.225 4.225 4 N -0.140 5.140 5 C -0.030 4.030 6 C -0.297 4.297 7 C 0.382 3.618 8 O -0.441 6.441 9 N -0.333 5.333 10 C 0.046 3.954 11 C -0.151 4.151 12 C -0.154 4.154 13 C -0.154 4.154 14 C 0.048 3.952 15 H 0.041 0.959 16 N -0.306 5.306 17 C -0.360 4.360 18 H 0.096 0.904 19 C -0.199 4.199 20 N -0.562 5.562 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.219 1.219 24 H -0.206 1.206 25 C 0.058 3.942 26 C -0.181 4.181 27 C -0.103 4.103 28 N -0.121 5.121 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.199 0.801 37 H 0.234 0.766 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.095 0.905 48 H 0.081 0.919 49 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.678 11.601 -13.739 18.857 hybrid contribution -0.225 -1.192 0.624 1.364 sum 5.453 10.409 -13.114 17.609 Atomic orbital electron populations 1.22263 0.93357 1.03644 1.03247 1.21335 0.95053 0.92775 0.85695 1.22234 1.02452 0.93921 1.03910 1.48708 1.49339 1.07646 1.08333 1.22780 0.96064 0.99535 0.84586 1.20403 1.18685 0.94423 0.96224 1.17131 0.76375 0.84033 0.84286 1.90693 1.55318 1.26753 1.71315 1.45388 1.65784 1.12102 1.10074 1.21539 0.93265 1.00024 0.80595 1.21897 0.94182 0.97161 1.01818 1.22812 0.97442 0.94204 1.00988 1.21886 0.96069 0.96624 1.00803 1.20925 0.88090 0.90201 0.95990 0.95947 1.43641 0.98993 1.03828 1.84164 1.18992 0.93468 0.82226 1.41276 0.90377 1.24802 0.95806 0.97559 1.01747 1.69937 0.98927 1.32191 1.55106 0.86192 0.77361 0.85221 0.77523 1.21698 1.21882 1.20624 1.21948 0.90299 0.81563 1.00389 1.22824 0.96872 1.00043 0.98347 1.24115 0.96944 0.98955 0.90244 1.77144 1.21393 0.92630 1.20906 0.91617 0.90387 0.91373 0.87759 0.91340 0.89837 0.91219 0.80078 0.76628 0.91721 0.91226 0.92259 0.92015 0.91729 0.91805 0.93749 0.92554 0.94447 0.90461 0.91896 0.79414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 9.52 37.16 0.35 -0.92 16 2 C 0.15 1.28 3.91 -67.93 -0.27 1.02 16 3 C -0.17 -1.01 8.83 37.16 0.33 -0.68 16 4 N -0.36 -4.46 3.49 -54.31 -0.19 -4.65 16 5 C 0.12 1.62 10.39 -16.56 -0.17 1.45 16 6 C -0.28 -4.46 6.13 -105.06 -0.64 -5.10 16 7 C 0.59 10.76 7.20 -12.52 -0.09 10.67 16 8 O -0.56 -11.35 15.03 5.27 0.08 -11.27 16 9 N -0.68 -12.25 4.52 -47.45 -0.21 -12.46 16 10 C 0.13 2.47 0.41 -130.51 -0.05 2.41 16 11 C -0.11 -1.76 6.16 -26.19 -0.16 -1.92 16 12 C -0.12 -1.63 6.93 -23.54 -0.16 -1.79 16 13 C -0.12 -1.90 6.46 -26.11 -0.17 -2.06 16 14 C 0.16 3.17 2.70 -68.42 -0.18 2.98 16 15 H 0.02 0.48 7.99 -51.93 -0.41 0.07 16 16 N -0.58 -14.19 3.17 -162.34 -0.51 -14.70 16 17 C -0.23 -6.15 10.27 -15.06 -0.15 -6.31 16 18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 19 C 0.00 -0.06 5.49 -17.43 -0.10 -0.15 16 20 N -0.92 -26.61 10.61 55.49 0.59 -26.02 16 21 Si 0.91 21.78 29.56 -169.99 -5.02 16.75 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.18 4.45 5.30 -0.76 0.00 4.44 16 26 C -0.14 -2.91 6.09 -25.43 -0.15 -3.07 16 27 C 0.09 1.27 11.50 -16.98 -0.20 1.07 16 28 N -0.30 -4.45 12.50 30.86 0.39 -4.07 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.42 7.13 -51.93 -0.37 0.05 16 36 H 0.18 2.05 7.24 -52.49 -0.38 1.67 16 37 H 0.40 6.96 6.56 -40.82 -0.27 6.69 16 38 H 0.06 1.05 7.74 -51.93 -0.40 0.65 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.05 7.20 -51.93 -0.37 0.68 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.06 1.55 7.34 -51.93 -0.38 1.17 16 46 H 0.04 1.00 7.80 -51.93 -0.41 0.60 16 47 H 0.08 1.66 6.27 -51.93 -0.33 1.33 16 48 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.19 2.49 7.50 -52.48 -0.39 2.10 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -32.50 385.99 -8.81 -41.31 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.91 Total: 7.26 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.83 Total: 2.04 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: 0.06 Total: -61.90 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.50 -8.81 -41.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992412554.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.592 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds