Wall clock time and date at job start Tue Mar 31 2020 16:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47198 * 2 1 4 4 N 1.46502 * 109.47267 * 120.00281 * 2 1 3 5 5 C 1.34259 * 125.74931 * 275.26846 * 4 2 1 6 6 C 1.38049 * 107.41354 * 180.14621 * 5 4 2 7 7 C 1.47431 * 126.41659 * 179.87385 * 6 5 4 8 8 O 1.21603 * 119.99546 * 359.70727 * 7 6 5 9 9 N 1.34768 * 120.00209 * 179.70864 * 7 6 5 10 10 C 1.46495 * 120.00385 * 179.97438 * 9 7 6 11 11 C 1.51225 * 111.06980 * 281.62477 * 10 9 7 12 12 C 1.55693 * 104.60421 * 275.45482 * 11 10 9 13 13 C 1.56278 * 105.93609 * 352.74847 * 12 11 10 14 14 C 1.50734 * 101.76307 * 335.53349 * 13 12 11 15 15 H 1.08998 * 108.20786 * 293.25913 * 14 13 12 16 16 N 1.42701 * 127.97599 * 160.93271 * 14 13 12 17 17 C 1.36937 * 127.10004 * 28.89649 * 16 14 13 18 18 H 1.07998 * 119.99941 * 352.43020 * 17 16 14 19 19 C 1.38813 * 119.99761 * 172.15030 * 17 16 14 20 20 N 1.31609 * 120.00242 * 5.68433 * 19 17 16 21 21 Si 1.86800 * 119.99689 * 185.68675 * 19 17 16 22 22 H 1.48499 * 109.47357 * 94.96010 * 21 19 17 23 23 H 1.48504 * 109.47058 * 214.96029 * 21 19 17 24 24 H 1.48503 * 109.47470 * 334.95596 * 21 19 17 25 25 C 1.49293 * 105.79612 * 208.63294 * 16 14 13 26 26 C 1.52143 * 111.08500 * 61.01415 * 10 9 7 27 27 C 1.41287 * 107.17074 * 359.60540 * 6 5 4 28 28 N 1.30452 * 108.02125 * 0.24238 * 27 6 5 29 29 H 1.09000 * 109.47057 * 299.99568 * 1 2 3 30 30 H 1.09000 * 109.47131 * 60.00182 * 1 2 3 31 31 H 1.08999 * 109.46805 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47057 * 240.00432 * 2 1 3 33 33 H 1.09001 * 109.47175 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47533 * 300.00253 * 3 2 1 35 35 H 1.09005 * 109.46560 * 59.99826 * 3 2 1 36 36 H 1.07998 * 126.29735 * 359.97438 * 5 4 2 37 37 H 0.97006 * 120.00082 * 0.02562 * 9 7 6 38 38 H 1.09004 * 110.40603 * 34.23848 * 11 10 9 39 39 H 1.08998 * 110.40955 * 156.55603 * 11 10 9 40 40 H 1.09004 * 110.15225 * 111.86776 * 12 11 10 41 41 H 1.08996 * 110.15645 * 233.62903 * 12 11 10 42 42 H 1.09004 * 110.97105 * 93.86110 * 13 12 11 43 43 H 1.09004 * 110.96804 * 217.58413 * 13 12 11 44 44 H 0.96999 * 120.00360 * 180.02562 * 20 19 17 45 45 H 1.08996 * 110.04891 * 128.16529 * 25 16 14 46 46 H 1.08998 * 110.04761 * 249.64176 * 25 16 14 47 47 H 1.08998 * 111.14752 * 316.72718 * 26 10 9 48 48 H 1.08992 * 111.18723 * 192.51547 * 26 10 9 49 49 H 1.08004 * 125.99143 * 180.20815 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1855 -0.1375 2.4080 6 6 2.6631 -1.1223 3.2493 7 6 2.9944 -0.9683 4.6777 8 8 2.8579 0.1113 5.2204 9 7 3.4486 -2.0239 5.3817 10 6 3.7783 -1.8708 6.8009 11 6 5.1252 -1.2063 6.9774 12 6 6.1540 -2.3701 6.8717 13 6 5.3109 -3.6851 6.8237 14 6 4.0369 -3.2583 7.5071 15 1 4.2647 -3.0493 8.5523 16 7 2.7561 -3.8846 7.4473 17 6 2.4952 -5.2144 7.2498 18 1 3.2987 -5.8907 6.9979 19 6 1.1990 -5.6940 7.3792 20 7 0.2043 -4.8561 7.5808 21 14 0.8666 -7.5288 7.2673 22 1 0.8412 -8.1115 8.6330 23 1 -0.4447 -7.7550 6.6082 24 1 1.9390 -8.1786 6.4717 25 6 1.7595 -2.7919 7.6508 26 6 2.5569 -1.4493 7.6042 27 6 2.7690 -2.3071 2.4869 28 7 2.3838 -2.0394 1.2696 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.9860 0.8898 2.6749 37 1 3.5578 -2.8850 4.9486 38 1 5.2951 -0.4756 6.1865 39 1 5.1882 -0.7286 7.9551 40 1 6.7437 -2.2684 5.9605 41 1 6.8073 -2.3743 7.7441 42 1 5.1219 -3.9900 5.7944 43 1 5.8011 -4.4833 7.3812 44 1 -0.7014 -5.1913 7.6716 45 1 1.0149 -2.8121 6.8551 46 1 1.2741 -2.9047 8.6203 47 1 1.9928 -0.6746 7.0848 48 1 2.8375 -1.1234 8.6057 49 1 3.1098 -3.2661 2.8483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992412554.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:04 Heat of formation + Delta-G solvation = 57.262658 kcal Electronic energy + Delta-G solvation = -29988.406580 eV Core-core repulsion = 26145.299177 eV Total energy + Delta-G solvation = -3843.107404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.47564 -41.66588 -39.17134 -36.71314 -36.12744 -34.31538 -33.56219 -31.81984 -31.44050 -30.66972 -28.49895 -28.25524 -27.29594 -25.92469 -24.83684 -23.32579 -22.19818 -21.50706 -21.18288 -20.86641 -19.95768 -18.95391 -18.29706 -17.32565 -16.91148 -16.51045 -16.35859 -16.06536 -15.82578 -15.74984 -15.66086 -15.19455 -14.92779 -14.75957 -14.10679 -14.01434 -13.87549 -13.77958 -13.52525 -13.21794 -13.09750 -12.99829 -12.95041 -12.81951 -12.59860 -12.40024 -12.33810 -12.11966 -12.07718 -12.00563 -11.89029 -11.74022 -11.50803 -11.31116 -11.01563 -10.68416 -10.56837 -10.51316 -9.92583 -9.55740 -8.81268 -7.82778 -5.16793 0.58194 1.17805 1.37282 1.48015 1.49174 1.57582 2.42377 2.52622 2.62091 3.14730 3.38992 3.42511 3.77132 3.78992 3.85947 3.92012 3.95042 4.06070 4.15070 4.17095 4.35168 4.37138 4.44699 4.47926 4.61081 4.63296 4.65468 4.70331 4.75643 4.80317 4.86186 4.88234 5.00797 5.04446 5.13604 5.14923 5.17124 5.19224 5.29754 5.34660 5.40646 5.52953 5.61969 5.64105 5.71832 5.90027 5.92983 6.21472 6.52413 6.81646 7.07269 7.47313 7.80370 8.54291 9.30540 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.004025 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.645834 B = 6954.558772 C = 8386.767642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 C -0.161 4.161 4 N -0.351 5.351 5 C 0.133 3.867 6 C -0.312 4.312 7 C 0.594 3.406 8 O -0.587 6.587 9 N -0.685 5.685 10 C 0.141 3.859 11 C -0.107 4.107 12 C -0.101 4.101 13 C -0.111 4.111 14 C 0.145 3.855 15 H 0.019 0.981 16 N -0.596 5.596 17 C -0.229 4.229 18 H 0.090 0.910 19 C -0.062 4.062 20 N -0.951 5.951 21 Si 0.970 3.030 22 H -0.292 1.292 23 H -0.302 1.302 24 H -0.263 1.263 25 C 0.196 3.804 26 C -0.131 4.131 27 C 0.080 3.920 28 N -0.320 5.320 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.046 0.954 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.203 0.797 37 H 0.400 0.600 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.243 0.757 45 H 0.017 0.983 46 H 0.002 0.998 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.308 12.131 -14.419 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 C -0.219 4.219 4 N -0.130 5.130 5 C -0.020 4.020 6 C -0.327 4.327 7 C 0.383 3.617 8 O -0.469 6.469 9 N -0.334 5.334 10 C 0.053 3.947 11 C -0.146 4.146 12 C -0.139 4.139 13 C -0.149 4.149 14 C 0.036 3.964 15 H 0.036 0.964 16 N -0.319 5.319 17 C -0.358 4.358 18 H 0.108 0.892 19 C -0.256 4.256 20 N -0.600 5.600 21 Si 0.800 3.200 22 H -0.220 1.220 23 H -0.229 1.229 24 H -0.187 1.187 25 C 0.071 3.929 26 C -0.170 4.170 27 C -0.107 4.107 28 N -0.140 5.140 29 H 0.078 0.922 30 H 0.127 0.873 31 H 0.065 0.935 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.089 0.911 36 H 0.219 0.781 37 H 0.235 0.765 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.053 0.947 45 H 0.035 0.965 46 H 0.020 0.980 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 7.814 12.282 -15.359 21.162 hybrid contribution -0.919 -1.340 1.062 1.941 sum 6.895 10.942 -14.298 19.279 Atomic orbital electron populations 1.22254 0.92638 1.02642 1.04539 1.21799 0.95608 0.94004 0.84354 1.22242 1.02133 0.92151 1.05386 1.49114 1.47854 1.06884 1.09135 1.23071 0.94454 0.99964 0.84516 1.20342 1.21180 0.95748 0.95443 1.17415 0.75660 0.83514 0.85129 1.90664 1.56563 1.27604 1.72099 1.45394 1.65924 1.12255 1.09803 1.21516 0.93594 0.99019 0.80558 1.21892 0.92533 0.97760 1.02386 1.22745 0.96705 0.91369 1.03125 1.21908 0.94253 0.98362 1.00403 1.21166 0.87863 0.90992 0.96335 0.96409 1.43758 1.00832 1.03337 1.83946 1.19405 0.93580 0.83445 1.39363 0.89226 1.25582 0.95898 1.01426 1.02656 1.70158 0.98826 1.33782 1.57194 0.85173 0.76988 0.80658 0.77227 1.21952 1.22920 1.18688 1.21587 0.90340 0.84089 0.96870 1.22668 0.97433 0.97249 0.99666 1.24248 0.96996 0.99188 0.90266 1.77089 1.21911 0.94182 1.20840 0.92158 0.87268 0.93475 0.86998 0.91794 0.87037 0.91080 0.78055 0.76469 0.91840 0.90178 0.90247 0.89800 0.91642 0.91026 0.94731 0.96497 0.98000 0.91560 0.90420 0.78710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.52 71.98 0.69 -1.52 16 2 C 0.14 2.10 3.91 44.99 0.18 2.28 16 3 C -0.16 -1.51 8.83 71.98 0.64 -0.87 16 4 N -0.35 -8.30 3.49 -325.74 -1.14 -9.44 16 5 C 0.13 3.44 10.39 84.28 0.88 4.32 16 6 C -0.31 -9.84 6.13 -20.15 -0.12 -9.96 16 7 C 0.59 21.59 7.20 86.67 0.62 22.22 16 8 O -0.59 -23.82 15.03 -4.04 -0.06 -23.88 16 9 N -0.69 -24.50 4.52 -422.31 -1.91 -26.40 16 10 C 0.14 5.12 0.41 4.46 0.00 5.12 16 11 C -0.11 -3.12 6.16 30.94 0.19 -2.93 16 12 C -0.10 -2.48 6.93 32.66 0.23 -2.25 16 13 C -0.11 -3.38 6.46 31.00 0.20 -3.18 16 14 C 0.15 5.71 2.70 46.67 0.13 5.84 16 15 H 0.02 0.75 7.99 -2.39 -0.02 0.73 16 16 N -0.60 -29.51 3.17 -667.52 -2.12 -31.62 16 17 C -0.23 -12.27 10.27 84.03 0.86 -11.41 16 18 H 0.09 4.51 7.83 -2.91 -0.02 4.48 16 19 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 20 N -0.95 -57.78 10.61 21.65 0.23 -57.55 16 21 Si 0.97 45.51 29.56 68.60 2.03 47.54 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 C 0.20 10.05 5.30 86.96 0.46 10.51 16 26 C -0.13 -5.50 6.09 31.43 0.19 -5.31 16 27 C 0.08 2.39 11.50 85.65 0.99 3.38 16 28 N -0.32 -9.32 12.50 -56.27 -0.70 -10.03 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.11 0.45 8.14 -2.39 -0.02 0.44 16 35 H 0.07 0.67 7.13 -2.38 -0.02 0.65 16 36 H 0.20 4.26 7.24 -2.91 -0.02 4.24 16 37 H 0.40 13.99 6.56 -92.70 -0.61 13.38 16 38 H 0.06 1.91 7.74 -2.38 -0.02 1.89 16 39 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 40 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 1.99 7.20 -2.39 -0.02 1.97 16 43 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.24 14.58 8.31 -92.71 -0.77 13.80 16 45 H 0.02 0.98 7.34 -2.39 -0.02 0.96 16 46 H 0.00 0.10 7.80 -2.39 -0.02 0.08 16 47 H 0.07 2.93 6.27 -2.39 -0.01 2.92 16 48 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 49 H 0.20 5.24 7.50 -2.91 -0.02 5.21 16 Total: -1.00 -72.97 385.99 3.26 -69.72 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.34 Total: 28.48 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 6.59 Total: 13.19 kcal Atomic # 7 Polarization: -129.40 SS G_CDS: -5.64 Total: -135.04 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.88 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -72.97 3.26 -69.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992412554.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.982 kcal (2) G-P(sol) polarization free energy of solvation -72.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds