Wall clock time and date at job start Tue Mar 31 2020 17:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47226 * 2 1 4 4 N 1.46498 * 109.46740 * 119.99982 * 2 1 3 5 5 N 1.39932 * 125.75839 * 300.01649 * 4 2 1 6 6 C 1.30445 * 108.90068 * 179.97438 * 5 4 2 7 7 C 1.41294 * 108.02219 * 359.78070 * 6 5 4 8 8 C 1.47426 * 126.41519 * 180.26498 * 7 6 5 9 9 O 1.21604 * 120.00070 * 185.40269 * 8 7 6 10 10 N 1.34781 * 119.99902 * 5.40194 * 8 7 6 11 11 C 1.46500 * 119.99883 * 180.02562 * 10 8 7 12 12 H 1.09004 * 110.88512 * 328.87769 * 11 10 8 13 13 C 1.55158 * 111.00474 * 204.99937 * 11 10 8 14 14 C 1.54316 * 102.93974 * 277.42823 * 13 11 10 15 15 N 1.47026 * 107.27574 * 337.80594 * 14 13 11 16 16 C 1.36929 * 125.64938 * 178.99105 * 15 14 13 17 17 H 1.08001 * 119.99943 * 179.97438 * 16 15 14 18 18 C 1.38813 * 120.00037 * 359.97308 * 16 15 14 19 19 N 1.31613 * 120.00271 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99816 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47422 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47189 * 119.99784 * 20 18 16 23 23 H 1.48503 * 109.47484 * 239.99831 * 20 18 16 24 24 C 1.47425 * 108.69997 * 358.94201 * 15 14 13 25 25 C 1.34267 * 125.75029 * 120.00263 * 4 2 1 26 26 C 1.50696 * 126.29350 * 359.97438 * 25 4 2 27 27 C 1.53001 * 117.50056 * 243.63514 * 26 25 4 28 28 C 1.52999 * 60.03047 * 107.49991 * 27 26 25 29 29 H 1.09003 * 109.47232 * 60.00097 * 1 2 3 30 30 H 1.08997 * 109.47703 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47084 * 300.00074 * 1 2 3 32 32 H 1.09002 * 109.46851 * 239.99592 * 2 1 3 33 33 H 1.08997 * 109.46631 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46936 * 300.00084 * 3 2 1 35 35 H 1.08996 * 109.47293 * 59.99650 * 3 2 1 36 36 H 1.07998 * 125.99100 * 179.97438 * 6 5 4 37 37 H 0.96997 * 119.99823 * 359.97438 * 10 8 7 38 38 H 1.09003 * 110.71519 * 35.79295 * 13 11 10 39 39 H 1.08997 * 110.71998 * 159.05826 * 13 11 10 40 40 H 1.09005 * 109.88590 * 97.22531 * 14 13 11 41 41 H 1.09001 * 109.88141 * 218.38718 * 14 13 11 42 42 H 0.97003 * 120.00155 * 179.97438 * 19 18 16 43 43 H 1.09000 * 110.36962 * 265.29159 * 24 15 14 44 44 H 1.08995 * 110.36745 * 142.97111 * 24 15 14 45 45 H 1.08997 * 115.55773 * 97.94429 * 26 25 4 46 46 H 1.09000 * 117.49672 * 0.02562 * 27 26 25 47 47 H 1.09002 * 117.49908 * 215.00365 * 27 26 25 48 48 H 1.09002 * 117.49585 * 107.47855 * 28 27 26 49 49 H 1.08999 * 117.50215 * 252.47299 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 7 1.7552 -0.3192 2.5194 6 6 2.3492 -1.1602 3.3204 7 6 3.0205 -2.1185 2.5283 8 6 3.8166 -3.2577 3.0201 9 8 4.4276 -3.9567 2.2347 10 7 3.8672 -3.5245 4.3403 11 6 4.6587 -4.6562 4.8290 12 1 4.6830 -5.4600 4.0932 13 6 4.1185 -5.1656 6.1914 14 6 4.7683 -4.1992 7.2039 15 7 5.9587 -3.6264 6.5587 16 6 6.8044 -2.7060 7.1177 17 1 7.6558 -2.3458 6.5593 18 6 6.5675 -2.2358 8.4022 19 7 5.5303 -2.6751 9.0829 20 14 7.7209 -0.9796 9.1645 21 1 8.8013 -0.6502 8.2002 22 1 6.9614 0.2526 9.4959 23 1 8.3167 -1.5421 10.4030 24 6 6.0917 -4.2080 5.2106 25 6 2.7934 -1.7869 1.2076 26 6 3.3140 -2.5239 0.0007 27 6 2.8440 -3.9655 -0.2039 28 6 2.3155 -2.8532 -1.1118 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 2.3287 -1.1311 4.3998 37 1 3.3802 -2.9667 4.9668 38 1 3.0318 -5.0893 6.2281 39 1 4.4405 -6.1906 6.3751 40 1 4.0674 -3.4049 7.4607 41 1 5.0594 -4.7441 8.1020 42 1 5.3649 -2.3468 9.9806 43 1 6.7642 -5.0655 5.2320 44 1 6.4543 -3.4579 4.5079 45 1 4.3345 -2.2804 -0.2950 46 1 2.1579 -4.3806 0.5344 47 1 3.5555 -4.6706 -0.6337 48 1 2.6795 -2.8263 -2.1389 49 1 1.2819 -2.5370 -0.9710 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015965164.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:19 Heat of formation + Delta-G solvation = 69.448418 kcal Electronic energy + Delta-G solvation = -29311.503881 eV Core-core repulsion = 25468.924891 eV Total energy + Delta-G solvation = -3842.578990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 5.20 seconds Orbital eigenvalues (eV) -42.62560 -40.47976 -38.65900 -37.98530 -36.53150 -35.28719 -33.56914 -31.67483 -31.28178 -30.59379 -28.83019 -28.25177 -26.48516 -25.02187 -24.11378 -23.26574 -23.03747 -21.95349 -21.46253 -20.72216 -20.17389 -18.93757 -18.38180 -17.37334 -17.16953 -16.70220 -16.54763 -16.07309 -15.73661 -15.64522 -15.42870 -15.36325 -15.18305 -14.65046 -14.46674 -14.03249 -13.80969 -13.76278 -13.51452 -13.19012 -13.12660 -13.02507 -12.87630 -12.81116 -12.58549 -12.41709 -12.34949 -12.22449 -12.07585 -11.98911 -11.92054 -11.78887 -11.55112 -11.45274 -11.19113 -10.71559 -10.70275 -10.37523 -10.00321 -9.55944 -8.82504 -7.83243 -5.16738 0.50594 1.15757 1.31404 1.45843 1.46051 1.56278 2.40412 2.50073 2.54055 2.77025 3.34824 3.35432 3.38570 3.72161 3.80728 3.86969 3.89242 3.94095 3.95591 4.07360 4.14159 4.18496 4.28081 4.38325 4.40283 4.63036 4.64750 4.70721 4.72988 4.77779 4.80100 4.82818 4.83433 4.95789 5.00231 5.07200 5.08992 5.10272 5.16185 5.19964 5.24385 5.43297 5.46548 5.67286 5.74649 5.80393 5.92831 6.22407 6.52189 6.76170 7.14210 7.42369 7.79964 8.44312 9.26806 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.014473 B = 0.003170 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.175331 B = 8831.465135 C = 9894.192884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 C -0.158 4.158 4 N -0.343 5.343 5 N -0.310 5.310 6 C 0.076 3.924 7 C -0.311 4.311 8 C 0.593 3.407 9 O -0.571 6.571 10 N -0.702 5.702 11 C 0.147 3.853 12 H 0.105 0.895 13 C -0.134 4.134 14 C 0.185 3.815 15 N -0.620 5.620 16 C -0.238 4.238 17 H 0.072 0.928 18 C -0.060 4.060 19 N -0.945 5.945 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.123 3.877 25 C 0.184 3.816 26 C -0.114 4.114 27 C -0.136 4.136 28 C -0.154 4.154 29 H 0.107 0.893 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.130 0.870 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.197 0.803 37 H 0.402 0.598 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.019 0.981 41 H 0.009 0.991 42 H 0.247 0.753 43 H 0.032 0.968 44 H 0.025 0.975 45 H 0.127 0.873 46 H 0.077 0.923 47 H 0.106 0.894 48 H 0.131 0.869 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.755 2.176 -23.384 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.038 3.962 3 C -0.216 4.216 4 N -0.123 5.123 5 N -0.129 5.129 6 C -0.111 4.111 7 C -0.326 4.326 8 C 0.382 3.618 9 O -0.452 6.452 10 N -0.352 5.352 11 C 0.041 3.959 12 H 0.123 0.877 13 C -0.173 4.173 14 C 0.060 3.940 15 N -0.347 5.347 16 C -0.368 4.368 17 H 0.090 0.910 18 C -0.253 4.253 19 N -0.594 5.594 20 Si 0.801 3.199 21 H -0.197 1.197 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.003 4.003 25 C 0.050 3.950 26 C -0.134 4.134 27 C -0.174 4.174 28 C -0.190 4.190 29 H 0.126 0.874 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.147 0.853 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.214 0.786 37 H 0.237 0.763 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.038 0.962 41 H 0.027 0.973 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.044 0.956 45 H 0.145 0.855 46 H 0.096 0.904 47 H 0.125 0.875 48 H 0.149 0.851 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.113 2.946 -23.943 27.458 hybrid contribution 1.265 0.327 1.859 2.273 sum -11.848 3.273 -22.084 25.274 Atomic orbital electron populations 1.22124 0.91926 1.03000 1.04282 1.21958 0.96685 0.94452 0.83131 1.22127 1.01239 0.93960 1.04227 1.48999 1.36950 1.20181 1.06163 1.77068 1.24851 1.23772 0.87234 1.24249 0.94369 0.91739 1.00745 1.20047 1.15197 1.04293 0.93027 1.17388 0.79633 0.82945 0.81865 1.90690 1.47030 1.51541 1.55917 1.45585 1.50503 1.32130 1.06942 1.21900 0.90012 0.88416 0.95608 0.87739 1.23077 1.01115 0.99942 0.93136 1.20945 0.87373 0.93162 0.92532 1.44706 1.28962 1.48144 1.12879 1.19371 1.04748 1.15181 0.97450 0.91030 1.25500 0.99974 1.02389 0.97422 1.70153 1.30189 1.47490 1.11608 0.85098 0.78255 0.78472 0.78028 1.19711 1.21802 1.21831 1.22067 0.96024 0.95835 0.86411 1.20807 0.91248 0.87960 0.95013 1.20476 0.99977 0.99661 0.93306 1.22735 1.02643 0.90442 1.01578 1.23351 0.98159 1.01328 0.96193 0.87428 0.92370 0.92666 0.85267 0.93054 0.87401 0.92701 0.78649 0.76313 0.89060 0.89121 0.96237 0.97317 0.94400 0.95071 0.95623 0.85540 0.90447 0.87513 0.85060 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.44 71.98 0.68 -1.16 16 2 C 0.14 2.00 3.15 44.99 0.14 2.14 16 3 C -0.16 -2.16 9.45 71.98 0.68 -1.48 16 4 N -0.34 -7.96 3.25 -312.62 -1.02 -8.98 16 5 N -0.31 -8.69 12.33 -56.28 -0.69 -9.38 16 6 C 0.08 2.21 11.50 85.65 0.99 3.19 16 7 C -0.31 -9.54 6.12 -20.15 -0.12 -9.66 16 8 C 0.59 20.44 7.81 86.66 0.68 21.12 16 9 O -0.57 -21.48 14.37 -4.04 -0.06 -21.54 16 10 N -0.70 -24.06 5.18 -439.20 -2.27 -26.33 16 11 C 0.15 5.23 3.43 46.38 0.16 5.39 16 12 H 0.10 3.50 7.54 -2.38 -0.02 3.48 16 13 C -0.13 -4.67 6.55 31.78 0.21 -4.46 16 14 C 0.18 8.83 5.36 86.73 0.47 9.29 16 15 N -0.62 -32.08 3.39 -691.99 -2.35 -34.43 16 16 C -0.24 -13.66 10.28 84.03 0.86 -12.79 16 17 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 18 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 19 N -0.95 -56.23 10.31 21.65 0.22 -56.00 16 20 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 C 0.12 5.37 6.93 86.86 0.60 5.97 16 25 C 0.18 4.76 6.45 42.14 0.27 5.03 16 26 C -0.11 -2.38 4.84 -11.52 -0.06 -2.44 16 27 C -0.14 -2.69 9.01 30.59 0.28 -2.42 16 28 C -0.15 -1.96 8.53 30.62 0.26 -1.70 16 29 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.13 1.32 5.64 -2.39 -0.01 1.30 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.20 5.12 7.53 -2.91 -0.02 5.10 16 37 H 0.40 13.40 7.65 -92.71 -0.71 12.69 16 38 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.02 1.02 7.38 -2.38 -0.02 1.00 16 41 H 0.01 0.47 7.50 -2.39 -0.02 0.45 16 42 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.13 2.67 8.14 -2.39 -0.02 2.66 16 46 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.10 1.16 7.46 -2.39 -0.02 1.14 16 Total: -1.00 -72.99 394.88 2.66 -70.33 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.24 Total: 24.60 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 6.56 Total: 13.09 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -6.11 Total: -135.12 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.06 Total: -21.54 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -72.99 2.66 -70.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015965164.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.782 kcal (2) G-P(sol) polarization free energy of solvation -72.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.20 seconds