Wall clock time and date at job start Tue Mar 31 2020 16:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47470 * 2 1 4 4 N 1.46496 * 109.47362 * 179.97438 * 3 2 1 5 5 N 1.39936 * 125.75737 * 270.02446 * 4 3 2 6 6 C 1.30441 * 108.89969 * 179.72690 * 5 4 3 7 7 C 1.41296 * 108.02547 * 0.38795 * 6 5 4 8 8 C 1.47422 * 126.41579 * 179.88085 * 7 6 5 9 9 O 1.21610 * 119.99723 * 234.16531 * 8 7 6 10 10 N 1.34776 * 120.00209 * 54.16716 * 8 7 6 11 11 C 1.47421 * 125.64978 * 355.02289 * 10 8 7 12 12 C 1.54910 * 104.83230 * 204.16653 * 11 10 8 13 13 C 1.55154 * 101.58133 * 322.98974 * 12 11 10 14 14 H 1.09002 * 110.87329 * 277.07029 * 13 12 11 15 15 N 1.46504 * 110.72332 * 153.86619 * 13 12 11 16 16 C 1.36931 * 120.00155 * 160.01901 * 15 13 12 17 17 H 1.08002 * 120.00334 * 0.02562 * 16 15 13 18 18 C 1.38811 * 120.00014 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00319 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99960 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47058 * 270.00171 * 20 18 16 22 22 H 1.48497 * 109.47293 * 29.99651 * 20 18 16 23 23 H 1.48500 * 109.46985 * 150.00294 * 20 18 16 24 24 C 1.47024 * 125.64726 * 175.06576 * 10 8 7 25 25 C 1.34267 * 125.75398 * 89.99521 * 4 3 2 26 26 C 1.50699 * 126.29112 * 0.04547 * 25 4 3 27 27 C 1.53003 * 117.49692 * 196.60324 * 26 25 4 28 28 C 1.52997 * 117.49931 * 127.94255 * 26 25 4 29 29 H 1.09000 * 109.46898 * 300.00728 * 1 2 3 30 30 H 1.08996 * 109.46600 * 60.00162 * 1 2 3 31 31 H 1.08994 * 109.47179 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47391 * 239.99289 * 2 1 3 33 33 H 1.08999 * 109.47101 * 119.99837 * 2 1 3 34 34 H 1.08997 * 109.47200 * 59.99964 * 3 2 1 35 35 H 1.09006 * 109.46575 * 299.99709 * 3 2 1 36 36 H 1.08000 * 125.99032 * 180.25868 * 6 5 4 37 37 H 1.09008 * 110.36139 * 322.99996 * 11 10 8 38 38 H 1.08995 * 110.37126 * 85.32462 * 11 10 8 39 39 H 1.09000 * 111.00767 * 204.91099 * 12 11 10 40 40 H 1.09008 * 111.00664 * 81.06073 * 12 11 10 41 41 H 0.97004 * 119.99671 * 340.02251 * 15 13 12 42 42 H 0.96996 * 120.00509 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.88368 * 59.48286 * 24 10 8 44 44 H 1.09000 * 110.01338 * 298.39496 * 24 10 8 45 45 H 1.09001 * 115.55068 * 342.27153 * 26 25 4 46 46 H 1.08999 * 117.50009 * 359.97438 * 27 26 25 47 47 H 1.08998 * 117.49747 * 145.02362 * 27 26 25 48 48 H 1.08998 * 117.50005 * 214.97758 * 28 26 25 49 49 H 1.09003 * 117.49630 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.3223 1.4421 1.1365 6 6 5.5708 1.4363 0.7588 7 6 5.6002 1.4417 -0.6538 8 6 6.8045 1.4405 -1.5041 9 8 6.9488 2.2972 -2.3551 10 7 7.7456 0.4901 -1.3383 11 6 7.7497 -0.5403 -0.2840 12 6 9.2377 -0.9418 -0.1277 13 6 9.7334 -0.8782 -1.5966 14 1 9.4939 -1.7995 -2.1275 15 7 11.1733 -0.6126 -1.6467 16 6 11.8863 -0.9145 -2.7762 17 1 11.3871 -1.3480 -3.6302 18 6 13.2506 -0.6634 -2.8235 19 7 13.9359 -0.9530 -3.9092 20 14 14.1142 0.0857 -1.3461 21 1 14.0896 1.5665 -1.4566 22 1 13.4173 -0.3293 -0.1023 23 1 15.5223 -0.3842 -1.3050 24 6 8.9385 0.3097 -2.1785 25 6 4.2900 1.4422 -1.0887 26 6 3.8261 1.4428 -2.5225 27 6 4.8458 1.0546 -3.5951 28 6 4.4032 2.5129 -3.4512 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6768 1.9562 -0.8901 36 1 6.4313 1.4306 1.4114 37 1 7.3678 -0.1285 0.6502 38 1 7.1550 -1.4004 -0.5917 39 1 9.3300 -1.9515 0.2725 40 1 9.7722 -0.2255 0.4963 41 1 11.6216 -0.2230 -0.8798 42 1 14.8894 -0.7779 -3.9422 43 1 9.5493 1.2121 -2.1538 44 1 8.6426 0.0907 -3.2045 45 1 2.7899 1.1441 -2.6814 46 1 5.8523 0.7991 -3.2637 47 1 4.4804 0.5008 -4.4599 48 1 3.7469 2.9179 -4.2215 49 1 5.1182 3.2167 -3.0251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019627120.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:08 Heat of formation + Delta-G solvation = 89.983910 kcal Electronic energy + Delta-G solvation = -29079.555196 eV Core-core repulsion = 25237.866692 eV Total energy + Delta-G solvation = -3841.688504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.77209 -39.48122 -37.66289 -36.67212 -35.76851 -34.20444 -32.03888 -31.56004 -30.30856 -29.74024 -28.03077 -26.66657 -24.55160 -23.49482 -22.71672 -22.41761 -22.33700 -21.48606 -20.51802 -19.84096 -18.78588 -17.84290 -17.37111 -16.63617 -16.02561 -15.83303 -15.39737 -15.08068 -15.02571 -14.56606 -14.48842 -13.97124 -13.88557 -13.77147 -13.44197 -13.04521 -12.87843 -12.72153 -12.53956 -12.48639 -12.19911 -11.92354 -11.88408 -11.69187 -11.42175 -11.36592 -11.24086 -11.14293 -11.00738 -10.89917 -10.75349 -10.50346 -10.47636 -10.07627 -9.67319 -9.62288 -9.42246 -9.00991 -8.63483 -8.27293 -7.37262 -5.81291 -3.19130 1.42819 2.08972 2.20715 3.01754 3.34516 3.36795 3.39545 3.44650 3.78913 4.09523 4.16296 4.33704 4.53830 4.55458 4.62553 4.67646 4.71097 4.85447 4.86792 4.88779 4.92499 5.01366 5.12366 5.16411 5.29731 5.35049 5.45547 5.47689 5.49142 5.57819 5.59457 5.63475 5.68667 5.70342 5.81871 5.87249 5.90524 6.05272 6.20168 6.23160 6.28152 6.28987 6.48440 6.65688 6.68805 6.79768 7.42667 7.79709 7.93087 8.37263 8.43205 9.13967 9.86131 10.04055 11.36428 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.002690 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.113401 B =10406.533401 C =10925.461412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.130 3.870 4 N -0.359 5.359 5 N -0.297 5.297 6 C 0.082 3.918 7 C -0.282 4.282 8 C 0.606 3.394 9 O -0.538 6.538 10 N -0.608 5.608 11 C 0.105 3.895 12 C -0.144 4.144 13 C 0.177 3.823 14 H 0.073 0.927 15 N -0.738 5.738 16 C -0.252 4.252 17 H 0.092 0.908 18 C 0.009 3.991 19 N -0.930 5.930 20 Si 0.884 3.116 21 H -0.283 1.283 22 H -0.276 1.276 23 H -0.290 1.290 24 C 0.085 3.915 25 C 0.176 3.824 26 C -0.126 4.126 27 C -0.157 4.157 28 C -0.147 4.147 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.188 0.812 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.364 0.636 42 H 0.261 0.739 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.115 0.885 46 H 0.111 0.889 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.904 2.289 8.901 29.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.009 3.991 4 N -0.138 5.138 5 N -0.116 5.116 6 C -0.105 4.105 7 C -0.297 4.297 8 C 0.394 3.606 9 O -0.416 6.416 10 N -0.341 5.341 11 C -0.018 4.018 12 C -0.183 4.183 13 C 0.066 3.934 14 H 0.091 0.909 15 N -0.379 5.379 16 C -0.381 4.381 17 H 0.110 0.890 18 C -0.188 4.188 19 N -0.576 5.576 20 Si 0.714 3.286 21 H -0.210 1.210 22 H -0.202 1.202 23 H -0.217 1.217 24 C -0.040 4.040 25 C 0.045 3.955 26 C -0.146 4.146 27 C -0.195 4.195 28 C -0.184 4.184 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.205 0.795 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.197 0.803 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.133 0.867 46 H 0.129 0.871 47 H 0.117 0.883 48 H 0.114 0.886 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -28.711 2.714 9.235 30.282 hybrid contribution 1.241 0.489 0.441 1.405 sum -27.470 3.203 9.676 29.300 Atomic orbital electron populations 1.21695 0.94142 1.02633 1.02244 1.21948 0.96781 0.95626 1.03668 1.21852 0.73889 0.98700 1.04683 1.48317 1.06439 1.56069 1.02998 1.77149 1.01737 1.25391 1.07311 1.23915 0.95180 0.97894 0.93466 1.19898 0.92670 1.23221 0.93895 1.16839 0.81072 0.80264 0.82402 1.90766 1.78035 1.36735 1.36072 1.48439 1.23854 1.30180 1.31661 1.22298 0.97582 0.91012 0.90947 1.23101 0.94079 1.02253 0.98866 1.21173 0.84461 0.95036 0.92739 0.90875 1.42718 1.02712 1.76012 1.16475 1.19071 0.90855 1.35552 0.92642 0.88977 1.24684 0.96296 1.00870 0.96924 1.69696 1.07680 1.53186 1.27076 0.86566 0.79348 0.79486 0.83210 1.20965 1.20242 1.21666 1.23118 0.85007 1.01677 0.94194 1.20409 0.89453 0.96593 0.89014 1.20526 0.99179 1.09564 0.85314 1.23263 0.99492 0.98625 0.98074 1.23244 1.02524 0.93022 0.99648 0.92214 0.92287 0.91828 0.91180 0.90760 0.88422 0.88778 0.79476 0.91058 0.91548 0.89824 0.90722 0.80253 0.92935 0.90859 0.91942 0.86692 0.87118 0.88331 0.88557 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.14 -0.86 6.26 -26.73 -0.17 -1.02 16 3 C 0.13 0.91 6.12 -4.04 -0.02 0.88 16 4 N -0.36 -3.90 3.58 -56.60 -0.20 -4.10 16 5 N -0.30 -3.68 12.50 30.86 0.39 -3.30 16 6 C 0.08 1.01 10.49 -16.98 -0.18 0.83 16 7 C -0.28 -3.86 5.35 -105.07 -0.56 -4.43 16 8 C 0.61 9.67 5.30 -12.52 -0.07 9.60 16 9 O -0.54 -10.05 13.28 5.27 0.07 -9.98 16 10 N -0.61 -9.33 3.33 -171.79 -0.57 -9.90 16 11 C 0.11 1.30 6.61 -2.53 -0.02 1.28 16 12 C -0.14 -1.99 6.69 -24.58 -0.16 -2.15 16 13 C 0.18 3.19 3.59 -66.10 -0.24 2.95 16 14 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 15 N -0.74 -16.67 4.98 -51.65 -0.26 -16.93 16 16 C -0.25 -6.88 10.46 -15.06 -0.16 -7.03 16 17 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 18 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 19 N -0.93 -28.78 13.97 55.49 0.78 -28.01 16 20 Si 0.88 21.73 27.73 -169.99 -4.71 17.01 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 C 0.09 1.53 6.62 -3.06 -0.02 1.51 16 25 C 0.18 2.13 6.66 -81.60 -0.54 1.59 16 26 C -0.13 -1.30 5.79 -91.77 -0.53 -1.83 16 27 C -0.16 -1.86 9.47 -26.69 -0.25 -2.12 16 28 C -0.15 -1.66 9.59 -26.69 -0.26 -1.91 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.50 7.48 -51.93 -0.39 0.11 16 36 H 0.19 1.86 7.20 -52.49 -0.38 1.48 16 37 H 0.07 0.75 5.61 -51.92 -0.29 0.46 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 1.04 8.00 -51.92 -0.42 0.63 16 41 H 0.36 8.11 5.58 -40.82 -0.23 7.88 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 43 H 0.07 1.51 8.03 -51.93 -0.42 1.09 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.12 0.88 7.63 -51.93 -0.40 0.48 16 46 H 0.11 1.65 4.58 -51.93 -0.24 1.41 16 47 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.12 1.69 6.33 -51.93 -0.33 1.37 16 LS Contribution 389.00 15.07 5.86 5.86 Total: -1.00 -33.51 389.00 -9.30 -42.81 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.74 Total: 8.47 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -2.91 Total: -1.93 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: 0.13 Total: -62.24 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.01 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.51 -9.30 -42.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019627120.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.793 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds