Wall clock time and date at job start Tue Mar 31 2020 16:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47470 * 2 1 4 4 N 1.46496 * 109.47362 * 179.97438 * 3 2 1 5 5 N 1.39936 * 125.75737 * 270.02446 * 4 3 2 6 6 C 1.30441 * 108.89969 * 179.72690 * 5 4 3 7 7 C 1.41296 * 108.02547 * 0.38795 * 6 5 4 8 8 C 1.47422 * 126.41579 * 179.88085 * 7 6 5 9 9 O 1.21610 * 119.99723 * 234.16531 * 8 7 6 10 10 N 1.34776 * 120.00209 * 54.16716 * 8 7 6 11 11 C 1.47421 * 125.64978 * 355.02289 * 10 8 7 12 12 C 1.54910 * 104.83230 * 204.16653 * 11 10 8 13 13 C 1.55154 * 101.58133 * 322.98974 * 12 11 10 14 14 H 1.09002 * 110.87329 * 277.07029 * 13 12 11 15 15 N 1.46504 * 110.72332 * 153.86619 * 13 12 11 16 16 C 1.36931 * 120.00155 * 160.01901 * 15 13 12 17 17 H 1.08002 * 120.00334 * 0.02562 * 16 15 13 18 18 C 1.38811 * 120.00014 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00319 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99960 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47058 * 270.00171 * 20 18 16 22 22 H 1.48497 * 109.47293 * 29.99651 * 20 18 16 23 23 H 1.48500 * 109.46985 * 150.00294 * 20 18 16 24 24 C 1.47024 * 125.64726 * 175.06576 * 10 8 7 25 25 C 1.34267 * 125.75398 * 89.99521 * 4 3 2 26 26 C 1.50699 * 126.29112 * 0.04547 * 25 4 3 27 27 C 1.53003 * 117.49692 * 196.60324 * 26 25 4 28 28 C 1.52997 * 117.49931 * 127.94255 * 26 25 4 29 29 H 1.09000 * 109.46898 * 300.00728 * 1 2 3 30 30 H 1.08996 * 109.46600 * 60.00162 * 1 2 3 31 31 H 1.08994 * 109.47179 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47391 * 239.99289 * 2 1 3 33 33 H 1.08999 * 109.47101 * 119.99837 * 2 1 3 34 34 H 1.08997 * 109.47200 * 59.99964 * 3 2 1 35 35 H 1.09006 * 109.46575 * 299.99709 * 3 2 1 36 36 H 1.08000 * 125.99032 * 180.25868 * 6 5 4 37 37 H 1.09008 * 110.36139 * 322.99996 * 11 10 8 38 38 H 1.08995 * 110.37126 * 85.32462 * 11 10 8 39 39 H 1.09000 * 111.00767 * 204.91099 * 12 11 10 40 40 H 1.09008 * 111.00664 * 81.06073 * 12 11 10 41 41 H 0.97004 * 119.99671 * 340.02251 * 15 13 12 42 42 H 0.96996 * 120.00509 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.88368 * 59.48286 * 24 10 8 44 44 H 1.09000 * 110.01338 * 298.39496 * 24 10 8 45 45 H 1.09001 * 115.55068 * 342.27153 * 26 25 4 46 46 H 1.08999 * 117.50009 * 359.97438 * 27 26 25 47 47 H 1.08998 * 117.49747 * 145.02362 * 27 26 25 48 48 H 1.08998 * 117.50005 * 214.97758 * 28 26 25 49 49 H 1.09003 * 117.49630 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.3223 1.4421 1.1365 6 6 5.5708 1.4363 0.7588 7 6 5.6002 1.4417 -0.6538 8 6 6.8045 1.4405 -1.5041 9 8 6.9488 2.2972 -2.3551 10 7 7.7456 0.4901 -1.3383 11 6 7.7497 -0.5403 -0.2840 12 6 9.2377 -0.9418 -0.1277 13 6 9.7334 -0.8782 -1.5966 14 1 9.4939 -1.7995 -2.1275 15 7 11.1733 -0.6126 -1.6467 16 6 11.8863 -0.9145 -2.7762 17 1 11.3871 -1.3480 -3.6302 18 6 13.2506 -0.6634 -2.8235 19 7 13.9359 -0.9530 -3.9092 20 14 14.1142 0.0857 -1.3461 21 1 14.0896 1.5665 -1.4566 22 1 13.4173 -0.3293 -0.1023 23 1 15.5223 -0.3842 -1.3050 24 6 8.9385 0.3097 -2.1785 25 6 4.2900 1.4422 -1.0887 26 6 3.8261 1.4428 -2.5225 27 6 4.8458 1.0546 -3.5951 28 6 4.4032 2.5129 -3.4512 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6768 1.9562 -0.8901 36 1 6.4313 1.4306 1.4114 37 1 7.3678 -0.1285 0.6502 38 1 7.1550 -1.4004 -0.5917 39 1 9.3300 -1.9515 0.2725 40 1 9.7722 -0.2255 0.4963 41 1 11.6216 -0.2230 -0.8798 42 1 14.8894 -0.7779 -3.9422 43 1 9.5493 1.2121 -2.1538 44 1 8.6426 0.0907 -3.2045 45 1 2.7899 1.1441 -2.6814 46 1 5.8523 0.7991 -3.2637 47 1 4.4804 0.5008 -4.4599 48 1 3.7469 2.9179 -4.2215 49 1 5.1182 3.2167 -3.0251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019627120.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:07 Heat of formation + Delta-G solvation = 68.557831 kcal Electronic energy + Delta-G solvation = -29080.484301 eV Core-core repulsion = 25237.866692 eV Total energy + Delta-G solvation = -3842.617608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.69907 -40.71635 -38.87574 -37.72012 -36.36605 -35.96769 -33.59021 -32.61952 -31.59147 -30.92599 -29.36946 -27.45677 -25.89309 -24.78644 -23.94259 -23.36450 -23.00235 -22.47019 -21.77682 -20.99273 -19.98002 -19.54880 -18.51837 -17.69793 -17.40699 -16.77753 -16.38453 -16.15778 -15.90645 -15.79846 -15.53087 -15.39760 -15.13076 -14.79295 -14.77091 -14.28738 -14.08459 -13.84487 -13.79946 -13.32355 -13.16160 -13.03860 -12.96776 -12.65659 -12.52556 -12.34027 -12.31302 -12.28505 -12.15924 -12.14231 -11.94810 -11.83245 -11.72099 -11.55476 -11.36604 -11.06826 -10.87308 -10.25351 -9.71929 -9.48783 -9.36931 -8.02670 -5.38236 0.49568 1.20255 1.30784 1.38542 1.42872 1.49320 1.84214 2.18312 2.48594 2.92054 3.26651 3.30332 3.39806 3.53417 3.70388 3.77186 3.81128 3.85946 3.91683 3.99447 4.03926 4.14420 4.25365 4.30870 4.34212 4.38680 4.49883 4.50486 4.53796 4.63744 4.73285 4.77055 4.81249 4.89631 4.95195 5.00839 5.09196 5.12456 5.13988 5.16882 5.26081 5.30912 5.35862 5.36788 5.43560 5.77034 5.86600 6.21041 6.51991 6.58626 7.06018 7.19432 7.80096 7.99059 9.18347 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.002690 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.113401 B =10406.533401 C =10925.461412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.120 3.880 4 N -0.351 5.351 5 N -0.310 5.310 6 C 0.083 3.917 7 C -0.306 4.306 8 C 0.607 3.393 9 O -0.575 6.575 10 N -0.608 5.608 11 C 0.109 3.891 12 C -0.130 4.130 13 C 0.170 3.830 14 H 0.070 0.930 15 N -0.740 5.740 16 C -0.234 4.234 17 H 0.059 0.941 18 C -0.062 4.062 19 N -0.982 5.982 20 Si 0.953 3.047 21 H -0.285 1.285 22 H -0.243 1.243 23 H -0.296 1.296 24 C 0.097 3.903 25 C 0.174 3.826 26 C -0.109 4.109 27 C -0.171 4.171 28 C -0.149 4.149 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.207 0.793 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.369 0.631 42 H 0.258 0.742 43 H 0.042 0.958 44 H 0.043 0.957 45 H 0.151 0.849 46 H 0.076 0.924 47 H 0.119 0.881 48 H 0.125 0.875 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.919 2.179 11.497 33.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.000 4.000 4 N -0.130 5.130 5 N -0.129 5.129 6 C -0.104 4.104 7 C -0.321 4.321 8 C 0.397 3.603 9 O -0.455 6.455 10 N -0.340 5.340 11 C -0.014 4.014 12 C -0.168 4.168 13 C 0.060 3.940 14 H 0.088 0.912 15 N -0.382 5.382 16 C -0.365 4.365 17 H 0.077 0.923 18 C -0.254 4.254 19 N -0.632 5.632 20 Si 0.780 3.220 21 H -0.212 1.212 22 H -0.167 1.167 23 H -0.222 1.222 24 C -0.029 4.029 25 C 0.041 3.959 26 C -0.128 4.128 27 C -0.209 4.209 28 C -0.186 4.186 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.224 0.776 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.203 0.797 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.169 0.831 46 H 0.095 0.905 47 H 0.137 0.863 48 H 0.143 0.857 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -31.812 2.586 11.903 34.064 hybrid contribution 2.025 0.524 -0.444 2.138 sum -29.787 3.110 11.460 32.066 Atomic orbital electron populations 1.21676 0.92484 1.03033 1.03113 1.21873 0.98056 0.94610 1.02716 1.22267 0.71666 0.99756 1.06285 1.48630 1.07617 1.54638 1.02130 1.77117 1.01901 1.25679 1.08174 1.24186 0.95840 0.97442 0.92930 1.19791 0.92281 1.25631 0.94380 1.17195 0.81513 0.79515 0.82044 1.90746 1.78798 1.38250 1.37748 1.48438 1.22807 1.30892 1.31897 1.22481 0.96964 0.90779 0.91134 1.23062 0.94449 1.04039 0.95290 1.21359 0.81992 0.94390 0.96260 0.91178 1.42673 1.04415 1.76049 1.15076 1.19026 0.91018 1.33420 0.93054 0.92319 1.25520 0.97302 1.02427 1.00158 1.69881 1.07824 1.55695 1.29778 0.85439 0.77769 0.78059 0.80699 1.21185 1.16738 1.22232 1.22678 0.85963 1.00196 0.94028 1.20663 0.89293 0.95776 0.90119 1.20689 1.00296 1.08005 0.83854 1.23199 0.98477 0.99509 0.99713 1.23180 1.02515 0.92218 1.00702 0.91712 0.91080 0.91693 0.91583 0.92278 0.87539 0.86540 0.77637 0.88428 0.90017 0.87295 0.90256 0.79704 0.93331 0.93912 0.93829 0.83102 0.90547 0.86294 0.85723 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 71.98 0.71 -0.03 16 2 C -0.13 -1.25 6.26 30.59 0.19 -1.06 16 3 C 0.12 1.30 6.12 86.38 0.53 1.83 16 4 N -0.35 -6.78 3.58 -333.00 -1.19 -7.97 16 5 N -0.31 -7.00 12.50 -56.27 -0.70 -7.70 16 6 C 0.08 1.86 10.49 85.65 0.90 2.76 16 7 C -0.31 -8.07 5.35 -20.15 -0.11 -8.18 16 8 C 0.61 19.58 5.30 86.66 0.46 20.04 16 9 O -0.57 -22.48 13.28 -4.06 -0.05 -22.53 16 10 N -0.61 -18.55 3.33 -815.66 -2.71 -21.27 16 11 C 0.11 2.43 6.61 86.86 0.57 3.01 16 12 C -0.13 -3.24 6.69 31.99 0.21 -3.03 16 13 C 0.17 6.07 3.59 46.18 0.17 6.23 16 14 H 0.07 2.56 8.12 -2.39 -0.02 2.54 16 15 N -0.74 -33.31 4.98 -317.33 -1.58 -34.89 16 16 C -0.23 -13.15 10.46 84.03 0.88 -12.27 16 17 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 18 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 19 N -0.98 -63.00 13.97 21.65 0.30 -62.70 16 20 Si 0.95 45.14 27.73 68.60 1.90 47.04 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.24 -10.08 6.52 99.48 0.65 -9.43 16 23 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 24 C 0.10 3.63 6.62 86.73 0.57 4.21 16 25 C 0.17 3.91 6.66 42.14 0.28 4.19 16 26 C -0.11 -2.02 5.79 -11.54 -0.07 -2.08 16 27 C -0.17 -3.97 9.47 30.62 0.29 -3.68 16 28 C -0.15 -3.22 9.59 30.62 0.29 -2.93 16 29 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.12 0.77 7.48 -2.38 -0.02 0.75 16 36 H 0.21 3.56 7.20 -2.91 -0.02 3.54 16 37 H 0.10 1.74 5.61 -2.38 -0.01 1.72 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.08 1.96 8.00 -2.38 -0.02 1.94 16 41 H 0.37 15.84 5.58 -92.70 -0.52 15.32 16 42 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 43 H 0.04 1.84 8.03 -2.39 -0.02 1.82 16 44 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.15 1.69 7.63 -2.39 -0.02 1.67 16 46 H 0.08 2.35 4.58 -2.39 -0.01 2.34 16 47 H 0.12 2.18 8.14 -2.39 -0.02 2.17 16 48 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.09 2.52 6.33 -2.39 -0.02 2.50 16 Total: -1.00 -77.08 389.00 2.70 -74.38 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.38 Total: 29.83 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.36 Total: 5.82 kcal Atomic # 7 Polarization: -128.65 SS G_CDS: -5.89 Total: -134.53 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Total: -77.08 2.70 -74.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019627120.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.933 kcal (2) G-P(sol) polarization free energy of solvation -77.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds