Wall clock time and date at job start Tue Mar 31 2020 17:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46903 * 2 1 4 4 N 1.46501 * 109.47006 * 239.99979 * 2 1 3 5 5 C 1.34262 * 125.75309 * 84.71786 * 4 2 1 6 6 C 1.38038 * 107.41606 * 179.90139 * 5 4 2 7 7 C 1.47427 * 126.41759 * 180.10322 * 6 5 4 8 8 O 1.21605 * 119.99938 * 0.27484 * 7 6 5 9 9 N 1.34779 * 120.00275 * 180.27596 * 7 6 5 10 10 C 1.46498 * 119.99818 * 179.97438 * 9 7 6 11 11 C 1.53145 * 109.43298 * 119.96187 * 10 9 7 12 12 C 1.53701 * 108.87602 * 66.17526 * 11 10 9 13 13 H 1.08997 * 112.10200 * 188.25146 * 12 11 10 14 14 C 1.54608 * 107.83379 * 312.22649 * 12 11 10 15 15 C 1.54313 * 104.75098 * 88.66978 * 14 12 11 16 16 C 1.54610 * 104.74832 * 0.02562 * 15 14 12 17 17 H 1.09002 * 112.19231 * 146.80430 * 16 15 14 18 18 C 1.53152 * 109.43486 * 240.18238 * 10 9 7 19 19 N 1.48291 * 104.26295 * 25.13999 * 16 15 14 20 20 C 1.36939 * 128.20983 * 138.42371 * 19 16 15 21 21 H 1.08001 * 119.99840 * 195.29788 * 20 19 16 22 22 C 1.38812 * 119.99926 * 15.30197 * 20 19 16 23 23 N 1.31624 * 120.00118 * 9.24643 * 22 20 19 24 24 Si 1.86800 * 119.99697 * 189.24339 * 22 20 19 25 25 H 1.48498 * 109.47483 * 0.02562 * 24 22 20 26 26 H 1.48511 * 109.46888 * 120.00172 * 24 22 20 27 27 H 1.48502 * 109.47113 * 239.99780 * 24 22 20 28 28 C 1.41293 * 107.17153 * 0.35268 * 6 5 4 29 29 N 1.30446 * 108.02066 * 359.78443 * 28 6 5 30 30 H 1.09005 * 109.47051 * 60.00343 * 1 2 3 31 31 H 1.09001 * 109.47183 * 300.00144 * 1 2 3 32 32 H 1.09006 * 109.46963 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46873 * 119.99919 * 2 1 3 34 34 H 1.08999 * 109.46813 * 60.00061 * 3 2 1 35 35 H 1.09003 * 109.47040 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.46559 * 299.99718 * 3 2 1 37 37 H 1.08001 * 126.28934 * 0.02562 * 5 4 2 38 38 H 0.96998 * 119.99768 * 0.02562 * 9 7 6 39 39 H 1.08994 * 109.43684 * 0.05046 * 10 9 7 40 40 H 1.09002 * 109.56701 * 185.98889 * 11 10 9 41 41 H 1.08995 * 109.57401 * 306.35449 * 11 10 9 42 42 H 1.08998 * 110.38150 * 207.48778 * 14 12 11 43 43 H 1.08997 * 110.38183 * 329.74071 * 14 12 11 44 44 H 1.08994 * 110.38078 * 118.81745 * 15 14 12 45 45 H 1.09002 * 110.38320 * 241.18153 * 15 14 12 46 46 H 1.09005 * 109.56499 * 53.64551 * 18 10 9 47 47 H 1.08998 * 109.57312 * 174.00824 * 18 10 9 48 48 H 0.96994 * 119.99923 * 180.02562 * 23 22 20 49 49 H 1.07998 * 125.98963 * 179.75885 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1852 -0.1375 -2.4082 6 6 2.6618 -1.1225 -3.2497 7 6 2.9920 -0.9688 -4.6783 8 8 2.8552 0.1107 -5.2212 9 7 3.4456 -2.0246 -5.3826 10 6 3.7732 -1.8718 -6.8022 11 6 5.2498 -2.2123 -7.0239 12 6 5.4646 -3.7063 -6.7341 13 1 6.5205 -3.9767 -6.7353 14 6 4.7804 -4.0303 -5.3861 15 6 3.3301 -4.4013 -5.7606 16 6 3.2746 -4.2672 -7.2999 17 1 2.5958 -4.9904 -7.7520 18 6 2.8962 -2.8143 -7.6319 19 7 4.6780 -4.4676 -7.7350 20 6 5.1383 -5.1844 -8.8072 21 1 6.1827 -5.4522 -8.8695 22 6 4.2625 -5.5666 -9.8141 23 7 3.0355 -5.0906 -9.8348 24 14 4.8254 -6.7563 -11.1396 25 1 6.2378 -7.1418 -10.8916 26 1 3.9694 -7.9696 -11.1117 27 1 4.7159 -6.1039 -12.4692 28 6 2.7683 -2.3072 -2.4871 29 7 2.3838 -2.0394 -1.2697 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.9854 0.8897 -2.6750 38 1 3.5544 -2.8857 -4.9496 39 1 3.5885 -0.8422 -7.1083 40 1 5.5227 -1.9979 -8.0572 41 1 5.8667 -1.6174 -6.3505 42 1 5.2749 -4.8727 -4.9022 43 1 4.7943 -3.1572 -4.7338 44 1 3.1111 -5.4262 -5.4611 45 1 2.6287 -3.7101 -5.2934 46 1 1.8472 -2.6454 -7.3886 47 1 3.0615 -2.6274 -8.6929 48 1 2.4234 -5.3580 -10.5381 49 1 3.1081 -3.2664 -2.8488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021435417.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:12 Heat of formation + Delta-G solvation = 137.797470 kcal Electronic energy + Delta-G solvation = -29945.135490 eV Core-core repulsion = 26105.520338 eV Total energy + Delta-G solvation = -3839.615152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 4.83 seconds Orbital eigenvalues (eV) -41.61764 -40.74247 -37.96936 -36.06378 -34.08868 -32.10431 -31.45612 -30.56961 -30.30598 -29.88003 -28.82432 -27.81043 -24.85820 -23.77141 -23.25442 -22.37644 -21.24838 -20.13018 -20.07419 -19.54504 -19.24853 -17.91583 -16.87600 -16.05055 -15.69871 -15.19409 -14.96111 -14.77972 -14.43681 -14.17465 -14.10323 -13.60281 -13.26064 -13.19857 -12.95453 -12.85900 -12.72781 -12.70024 -12.56832 -12.08991 -12.03678 -11.85337 -11.66721 -11.59539 -11.50949 -11.05942 -10.92174 -10.89104 -10.62000 -10.31208 -10.22810 -10.00858 -9.69612 -9.68480 -9.44721 -9.33958 -9.31998 -8.75986 -8.59943 -8.04170 -6.80646 -5.76716 -3.11458 1.53502 2.13288 2.19405 3.38593 3.45579 3.47256 3.77415 3.80096 4.10445 4.37619 4.46816 4.55588 4.59867 4.70640 4.98097 5.06087 5.17101 5.18871 5.26681 5.29356 5.36390 5.37275 5.47652 5.60214 5.63864 5.65302 5.69380 5.75837 5.86143 5.92447 6.06297 6.08452 6.22787 6.35365 6.36761 6.58089 6.60846 6.64335 6.72004 6.72873 6.84939 6.94566 7.07283 7.22262 7.45705 7.55685 7.58512 7.75844 8.08582 8.23234 8.75062 9.13634 9.75748 10.54373 11.35809 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.029664 B = 0.002745 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.675287 B =10198.810988 C =10349.126349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.152 3.848 3 C -0.168 4.168 4 N -0.358 5.358 5 C 0.123 3.877 6 C -0.285 4.285 7 C 0.575 3.425 8 O -0.567 6.567 9 N -0.731 5.731 10 C 0.143 3.857 11 C -0.138 4.138 12 C 0.150 3.850 13 H 0.068 0.932 14 C -0.164 4.164 15 C -0.176 4.176 16 C 0.183 3.817 17 H 0.111 0.889 18 C -0.124 4.124 19 N -0.583 5.583 20 C -0.223 4.223 21 H 0.075 0.925 22 C -0.005 4.005 23 N -0.911 5.911 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.077 3.923 29 N -0.298 5.298 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.184 0.816 38 H 0.426 0.574 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.043 0.957 47 H 0.085 0.915 48 H 0.252 0.748 49 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.195 9.816 19.775 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.051 3.949 3 C -0.226 4.226 4 N -0.139 5.139 5 C -0.028 4.028 6 C -0.300 4.300 7 C 0.362 3.638 8 O -0.448 6.448 9 N -0.402 5.402 10 C 0.039 3.961 11 C -0.178 4.178 12 C 0.042 3.958 13 H 0.086 0.914 14 C -0.203 4.203 15 C -0.215 4.215 16 C 0.076 3.924 17 H 0.128 0.872 18 C -0.164 4.164 19 N -0.304 5.304 20 C -0.351 4.351 21 H 0.093 0.907 22 C -0.202 4.202 23 N -0.557 5.557 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.219 1.219 28 C -0.111 4.111 29 N -0.117 5.117 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.201 0.799 38 H 0.285 0.715 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.062 0.938 47 H 0.103 0.897 48 H 0.063 0.937 49 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.556 9.941 20.471 23.033 hybrid contribution 0.369 -0.571 -1.388 1.546 sum -3.187 9.369 19.083 21.497 Atomic orbital electron populations 1.22263 0.93301 1.03572 1.03332 1.21371 0.95068 0.92873 0.85634 1.22245 1.02567 0.93816 1.03980 1.48741 1.49146 1.07584 1.08382 1.22829 0.95871 0.99600 0.84505 1.20438 1.18768 0.94447 0.96346 1.17521 0.76859 0.84753 0.84672 1.90700 1.55549 1.27200 1.71374 1.48839 1.65183 1.13983 1.12239 1.21070 0.94967 1.00585 0.79437 1.22503 0.95135 0.98552 1.01614 1.21518 0.95330 0.90161 0.88802 0.91425 1.23300 0.97052 1.00422 0.99531 1.23468 0.95388 1.00678 1.01989 1.21477 0.88580 0.94762 0.87571 0.87169 1.22376 0.96422 0.97009 1.00558 1.45172 1.01046 1.55969 1.28197 1.19025 0.94470 1.25494 0.96120 0.90676 1.24837 0.96740 1.00912 0.97699 1.69874 1.05553 1.45800 1.34456 0.86100 0.77737 0.80595 0.81599 1.20549 1.21805 1.21852 1.24098 0.97541 0.98945 0.90472 1.77140 1.21150 0.92775 1.20634 0.91641 0.90279 0.91410 0.87636 0.89737 0.91256 0.91200 0.79928 0.71490 0.89904 0.90878 0.93380 0.92093 0.90292 0.92173 0.90404 0.93824 0.89690 0.93730 0.79625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 9.52 37.16 0.35 -0.63 16 2 C 0.15 1.05 3.91 -67.93 -0.27 0.78 16 3 C -0.17 -0.83 8.83 37.16 0.33 -0.50 16 4 N -0.36 -3.83 3.49 -54.31 -0.19 -4.02 16 5 C 0.12 1.46 10.39 -16.56 -0.17 1.29 16 6 C -0.29 -4.04 6.13 -105.07 -0.64 -4.68 16 7 C 0.57 9.83 7.81 -12.52 -0.10 9.73 16 8 O -0.57 -11.40 16.22 5.27 0.09 -11.31 16 9 N -0.73 -12.22 2.77 -54.73 -0.15 -12.37 16 10 C 0.14 2.73 3.15 -67.78 -0.21 2.52 16 11 C -0.14 -2.59 5.49 -26.29 -0.14 -2.73 16 12 C 0.15 2.94 4.32 -65.72 -0.28 2.66 16 13 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 14 C -0.16 -2.69 5.75 -25.20 -0.14 -2.84 16 15 C -0.18 -3.10 5.76 -25.20 -0.15 -3.24 16 16 C 0.18 4.06 3.13 -65.70 -0.21 3.85 16 17 H 0.11 2.82 6.36 -51.93 -0.33 2.49 16 18 C -0.12 -2.63 5.41 -26.25 -0.14 -2.77 16 19 N -0.58 -13.78 2.82 -152.70 -0.43 -14.21 16 20 C -0.22 -5.89 10.38 -15.06 -0.16 -6.04 16 21 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 22 C 0.00 -0.13 5.42 -17.43 -0.09 -0.22 16 23 N -0.91 -25.25 10.60 55.49 0.59 -24.66 16 24 Si 0.91 21.45 29.56 -169.99 -5.03 16.42 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 C 0.08 0.99 11.50 -16.98 -0.20 0.79 16 29 N -0.30 -3.80 12.50 30.86 0.39 -3.42 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.34 7.13 -51.93 -0.37 -0.03 16 37 H 0.18 1.82 7.24 -52.49 -0.38 1.44 16 38 H 0.43 6.49 0.85 -65.41 -0.06 6.43 16 39 H 0.08 1.68 6.89 -51.93 -0.36 1.32 16 40 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.17 5.27 -51.93 -0.27 0.90 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.08 1.26 5.27 -51.93 -0.27 0.99 16 46 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.08 2.07 8.00 -51.93 -0.42 1.66 16 48 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 49 H 0.19 2.02 7.50 -52.49 -0.39 1.62 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -31.58 374.58 -8.79 -40.37 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.47 Total: 9.60 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.22 Total: -2.04 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.20 Total: -58.68 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.58 -8.79 -40.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021435417.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.163 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.83 seconds