Wall clock time and date at job start Tue Mar 31 2020 17:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46903 * 2 1 4 4 N 1.46501 * 109.47006 * 239.99979 * 2 1 3 5 5 C 1.34262 * 125.75309 * 84.71786 * 4 2 1 6 6 C 1.38038 * 107.41606 * 179.90139 * 5 4 2 7 7 C 1.47427 * 126.41759 * 180.10322 * 6 5 4 8 8 O 1.21605 * 119.99938 * 0.27484 * 7 6 5 9 9 N 1.34779 * 120.00275 * 180.27596 * 7 6 5 10 10 C 1.46498 * 119.99818 * 179.97438 * 9 7 6 11 11 C 1.53145 * 109.43298 * 119.96187 * 10 9 7 12 12 C 1.53701 * 108.87602 * 66.17526 * 11 10 9 13 13 H 1.08997 * 112.10200 * 188.25146 * 12 11 10 14 14 C 1.54608 * 107.83379 * 312.22649 * 12 11 10 15 15 C 1.54313 * 104.75098 * 88.66978 * 14 12 11 16 16 C 1.54610 * 104.74832 * 0.02562 * 15 14 12 17 17 H 1.09002 * 112.19231 * 146.80430 * 16 15 14 18 18 C 1.53152 * 109.43486 * 240.18238 * 10 9 7 19 19 N 1.48291 * 104.26295 * 25.13999 * 16 15 14 20 20 C 1.36939 * 128.20983 * 138.42371 * 19 16 15 21 21 H 1.08001 * 119.99840 * 195.29788 * 20 19 16 22 22 C 1.38812 * 119.99926 * 15.30197 * 20 19 16 23 23 N 1.31624 * 120.00118 * 9.24643 * 22 20 19 24 24 Si 1.86800 * 119.99697 * 189.24339 * 22 20 19 25 25 H 1.48498 * 109.47483 * 0.02562 * 24 22 20 26 26 H 1.48511 * 109.46888 * 120.00172 * 24 22 20 27 27 H 1.48502 * 109.47113 * 239.99780 * 24 22 20 28 28 C 1.41293 * 107.17153 * 0.35268 * 6 5 4 29 29 N 1.30446 * 108.02066 * 359.78443 * 28 6 5 30 30 H 1.09005 * 109.47051 * 60.00343 * 1 2 3 31 31 H 1.09001 * 109.47183 * 300.00144 * 1 2 3 32 32 H 1.09006 * 109.46963 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46873 * 119.99919 * 2 1 3 34 34 H 1.08999 * 109.46813 * 60.00061 * 3 2 1 35 35 H 1.09003 * 109.47040 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.46559 * 299.99718 * 3 2 1 37 37 H 1.08001 * 126.28934 * 0.02562 * 5 4 2 38 38 H 0.96998 * 119.99768 * 0.02562 * 9 7 6 39 39 H 1.08994 * 109.43684 * 0.05046 * 10 9 7 40 40 H 1.09002 * 109.56701 * 185.98889 * 11 10 9 41 41 H 1.08995 * 109.57401 * 306.35449 * 11 10 9 42 42 H 1.08998 * 110.38150 * 207.48778 * 14 12 11 43 43 H 1.08997 * 110.38183 * 329.74071 * 14 12 11 44 44 H 1.08994 * 110.38078 * 118.81745 * 15 14 12 45 45 H 1.09002 * 110.38320 * 241.18153 * 15 14 12 46 46 H 1.09005 * 109.56499 * 53.64551 * 18 10 9 47 47 H 1.08998 * 109.57312 * 174.00824 * 18 10 9 48 48 H 0.96994 * 119.99923 * 180.02562 * 23 22 20 49 49 H 1.07998 * 125.98963 * 179.75885 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1852 -0.1375 -2.4082 6 6 2.6618 -1.1225 -3.2497 7 6 2.9920 -0.9688 -4.6783 8 8 2.8552 0.1107 -5.2212 9 7 3.4456 -2.0246 -5.3826 10 6 3.7732 -1.8718 -6.8022 11 6 5.2498 -2.2123 -7.0239 12 6 5.4646 -3.7063 -6.7341 13 1 6.5205 -3.9767 -6.7353 14 6 4.7804 -4.0303 -5.3861 15 6 3.3301 -4.4013 -5.7606 16 6 3.2746 -4.2672 -7.2999 17 1 2.5958 -4.9904 -7.7520 18 6 2.8962 -2.8143 -7.6319 19 7 4.6780 -4.4676 -7.7350 20 6 5.1383 -5.1844 -8.8072 21 1 6.1827 -5.4522 -8.8695 22 6 4.2625 -5.5666 -9.8141 23 7 3.0355 -5.0906 -9.8348 24 14 4.8254 -6.7563 -11.1396 25 1 6.2378 -7.1418 -10.8916 26 1 3.9694 -7.9696 -11.1117 27 1 4.7159 -6.1039 -12.4692 28 6 2.7683 -2.3072 -2.4871 29 7 2.3838 -2.0394 -1.2697 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.9854 0.8897 -2.6750 38 1 3.5544 -2.8857 -4.9496 39 1 3.5885 -0.8422 -7.1083 40 1 5.5227 -1.9979 -8.0572 41 1 5.8667 -1.6174 -6.3505 42 1 5.2749 -4.8727 -4.9022 43 1 4.7943 -3.1572 -4.7338 44 1 3.1111 -5.4262 -5.4611 45 1 2.6287 -3.7101 -5.2934 46 1 1.8472 -2.6454 -7.3886 47 1 3.0615 -2.6274 -8.6929 48 1 2.4234 -5.3580 -10.5381 49 1 3.1081 -3.2664 -2.8488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021435417.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:07 Heat of formation + Delta-G solvation = 120.024479 kcal Electronic energy + Delta-G solvation = -29945.906185 eV Core-core repulsion = 26105.520338 eV Total energy + Delta-G solvation = -3840.385847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.74928 -42.05477 -39.38851 -36.70849 -35.77653 -33.88314 -32.90889 -31.91293 -31.44912 -31.15137 -30.38839 -28.22918 -26.56913 -24.92869 -24.82192 -23.42230 -22.67853 -21.43186 -21.13851 -20.98059 -20.66557 -19.24812 -18.42944 -17.21663 -16.78291 -16.47969 -16.19330 -15.98492 -15.92205 -15.47181 -15.01978 -14.98394 -14.67256 -14.51801 -14.43947 -13.93573 -13.84181 -13.70702 -13.62695 -13.27173 -13.19787 -13.17314 -13.07414 -12.80512 -12.59632 -12.38628 -12.37108 -12.28855 -11.98881 -11.92844 -11.88808 -11.72163 -11.36840 -11.13486 -10.98611 -10.74352 -10.56860 -10.52844 -9.83346 -9.44357 -8.71650 -7.79685 -5.14268 0.56739 1.16732 1.36963 1.48947 1.50664 1.59612 2.49410 2.53648 2.54430 3.37538 3.44399 3.57917 3.77109 3.85692 3.91807 3.96672 3.99958 4.08438 4.14727 4.20895 4.31541 4.34315 4.36534 4.47301 4.53414 4.63684 4.70347 4.72965 4.75426 4.81473 4.84141 4.88825 4.99221 5.05473 5.12911 5.16939 5.17757 5.21750 5.30628 5.33286 5.39681 5.48859 5.59483 5.64511 5.83636 5.88850 5.92138 6.30981 6.52284 6.75392 7.13569 7.41067 7.80116 8.60385 9.31400 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.029664 B = 0.002745 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.675287 B =10198.810988 C =10349.126349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 C -0.164 4.164 4 N -0.349 5.349 5 C 0.134 3.866 6 C -0.313 4.313 7 C 0.577 3.423 8 O -0.602 6.602 9 N -0.723 5.723 10 C 0.155 3.845 11 C -0.130 4.130 12 C 0.141 3.859 13 H 0.075 0.925 14 C -0.150 4.150 15 C -0.165 4.165 16 C 0.177 3.823 17 H 0.071 0.929 18 C -0.113 4.113 19 N -0.603 5.603 20 C -0.228 4.228 21 H 0.077 0.923 22 C -0.059 4.059 23 N -0.935 5.935 24 Si 0.968 3.032 25 H -0.269 1.269 26 H -0.295 1.295 27 H -0.299 1.299 28 C 0.078 3.922 29 N -0.314 5.314 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.201 0.799 38 H 0.433 0.567 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.042 0.958 47 H 0.044 0.956 48 H 0.245 0.755 49 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.681 10.378 22.981 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 C -0.222 4.222 4 N -0.128 5.128 5 C -0.019 4.019 6 C -0.328 4.328 7 C 0.366 3.634 8 O -0.485 6.485 9 N -0.395 5.395 10 C 0.050 3.950 11 C -0.170 4.170 12 C 0.034 3.966 13 H 0.093 0.907 14 C -0.189 4.189 15 C -0.204 4.204 16 C 0.070 3.930 17 H 0.089 0.911 18 C -0.153 4.153 19 N -0.324 5.324 20 C -0.358 4.358 21 H 0.095 0.905 22 C -0.253 4.253 23 N -0.583 5.583 24 Si 0.798 3.202 25 H -0.193 1.193 26 H -0.222 1.222 27 H -0.226 1.226 28 C -0.109 4.109 29 N -0.134 5.134 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.070 0.930 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.217 0.783 38 H 0.294 0.706 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.120 0.880 44 H 0.087 0.913 45 H 0.113 0.887 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.026 10.492 23.748 26.138 hybrid contribution 0.171 -0.655 -2.301 2.398 sum -2.855 9.837 21.447 23.768 Atomic orbital electron populations 1.22248 0.92350 1.02881 1.04512 1.21797 0.95795 0.93793 0.84383 1.22259 1.02085 0.92477 1.05349 1.49120 1.47711 1.06992 1.09007 1.23092 0.94295 0.99980 0.84563 1.20235 1.21524 0.96045 0.94967 1.17883 0.75801 0.83960 0.85733 1.90682 1.56985 1.28455 1.72377 1.48654 1.65398 1.14493 1.10933 1.20729 0.94687 0.98957 0.80608 1.22403 0.95107 0.98638 1.00885 1.21772 0.95695 0.89792 0.89301 0.90717 1.23206 0.95547 1.02231 0.97957 1.23339 0.96904 1.01919 0.98237 1.21373 0.87399 0.93761 0.90479 0.91141 1.22179 0.96925 0.97614 0.98602 1.45363 1.02239 1.56484 1.28332 1.19323 0.94533 1.25112 0.96800 0.90547 1.25526 0.97067 1.02831 0.99856 1.70069 1.06363 1.47063 1.34826 0.85161 0.77696 0.78423 0.78896 1.19324 1.22250 1.22621 1.24334 0.97152 0.99207 0.90186 1.77113 1.21587 0.94009 1.20673 0.92047 0.87537 0.92989 0.86917 0.87161 0.91972 0.91086 0.78264 0.70617 0.91191 0.93156 0.90912 0.90025 0.87958 0.91273 0.88706 0.93923 0.93768 0.94612 0.78005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.52 71.98 0.69 -0.79 16 2 C 0.14 1.56 3.91 44.99 0.18 1.74 16 3 C -0.16 -1.11 8.83 71.98 0.64 -0.47 16 4 N -0.35 -6.62 3.49 -325.74 -1.14 -7.76 16 5 C 0.13 2.88 10.39 84.27 0.88 3.76 16 6 C -0.31 -8.23 6.13 -20.15 -0.12 -8.35 16 7 C 0.58 18.93 7.81 86.66 0.68 19.61 16 8 O -0.60 -23.81 16.22 -4.05 -0.07 -23.87 16 9 N -0.72 -23.07 2.77 -445.33 -1.23 -24.31 16 10 C 0.16 5.92 3.15 45.09 0.14 6.06 16 11 C -0.13 -4.81 5.49 30.88 0.17 -4.64 16 12 C 0.14 5.35 4.32 45.42 0.20 5.55 16 13 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 14 C -0.15 -4.52 5.75 31.59 0.18 -4.34 16 15 C -0.16 -5.55 5.76 31.59 0.18 -5.36 16 16 C 0.18 7.98 3.13 45.45 0.14 8.12 16 17 H 0.07 3.76 6.36 -2.39 -0.02 3.75 16 18 C -0.11 -4.98 5.41 30.90 0.17 -4.81 16 19 N -0.60 -28.74 2.82 -637.03 -1.80 -30.54 16 20 C -0.23 -12.24 10.38 84.03 0.87 -11.37 16 21 H 0.08 3.97 7.85 -2.91 -0.02 3.95 16 22 C -0.06 -3.23 5.42 84.86 0.46 -2.77 16 23 N -0.94 -54.11 10.60 21.65 0.23 -53.88 16 24 Si 0.97 45.12 29.56 68.60 2.03 47.15 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 28 C 0.08 1.82 11.50 85.65 0.99 2.80 16 29 N -0.31 -7.28 12.50 -56.27 -0.70 -7.99 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.49 7.13 -2.39 -0.02 0.47 16 37 H 0.20 3.51 7.24 -2.91 -0.02 3.49 16 38 H 0.43 12.16 0.85 -115.81 -0.10 12.07 16 39 H 0.07 2.89 6.89 -2.39 -0.02 2.87 16 40 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.10 2.66 5.27 -2.39 -0.01 2.64 16 44 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.10 2.88 5.27 -2.39 -0.01 2.87 16 46 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 47 H 0.04 2.29 8.00 -2.39 -0.02 2.27 16 48 H 0.24 13.95 8.31 -92.71 -0.77 13.18 16 49 H 0.20 3.73 7.50 -2.91 -0.02 3.71 16 Total: -1.00 -70.82 374.58 4.60 -66.21 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.86 Total: 30.25 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 6.42 Total: 4.73 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -4.64 Total: -124.47 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.07 Total: -23.87 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -70.82 4.60 -66.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021435417.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.236 kcal (2) G-P(sol) polarization free energy of solvation -70.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds