Wall clock time and date at job start Tue Mar 31 2020 16:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47209 * 2 1 4 4 N 1.46500 * 109.47101 * 120.00450 * 2 1 3 5 5 C 1.35039 * 124.88395 * 275.30125 * 4 2 1 6 6 C 1.35357 * 107.22974 * 180.14906 * 5 4 2 7 7 C 1.41505 * 105.50305 * 359.58669 * 6 5 4 8 8 C 1.47712 * 126.51975 * 180.29320 * 7 6 5 9 9 O 1.21576 * 119.99602 * 353.17085 * 8 7 6 10 10 N 1.34773 * 120.00168 * 173.16066 * 8 7 6 11 11 C 1.46595 * 119.75249 * 183.39491 * 10 8 7 12 12 C 1.53882 * 110.71084 * 132.26236 * 11 10 8 13 13 C 1.51985 * 107.28788 * 51.80955 * 12 11 10 14 14 H 1.09001 * 111.01391 * 57.33138 * 13 12 11 15 15 C 1.53698 * 115.00286 * 184.55439 * 13 12 11 16 16 C 1.55298 * 101.81539 * 153.46302 * 15 13 12 17 17 N 1.48158 * 107.04199 * 337.54786 * 16 15 13 18 18 C 1.36939 * 126.40000 * 174.99818 * 17 16 15 19 19 H 1.07994 * 119.99769 * 180.02562 * 18 17 16 20 20 C 1.38815 * 119.99512 * 0.03283 * 18 17 16 21 21 N 1.31616 * 120.00351 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99390 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46930 * 90.00073 * 22 20 18 24 24 H 1.48496 * 109.46917 * 209.99418 * 22 20 18 25 25 H 1.48492 * 109.47272 * 329.99992 * 22 20 18 26 26 C 1.45511 * 107.20204 * 355.00486 * 17 16 15 27 27 H 1.08998 * 109.56722 * 273.36326 * 26 17 16 28 28 C 1.47792 * 119.75036 * 3.12328 * 10 8 7 29 29 N 1.28467 * 124.88825 * 94.97679 * 4 2 1 30 30 H 1.09004 * 109.47309 * 59.99786 * 1 2 3 31 31 H 1.09003 * 109.47121 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46735 * 299.99491 * 1 2 3 33 33 H 1.09003 * 109.46799 * 240.00029 * 2 1 3 34 34 H 1.09004 * 109.47095 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47435 * 300.00468 * 3 2 1 36 36 H 1.09003 * 109.47216 * 60.00284 * 3 2 1 37 37 H 1.08000 * 126.38349 * 0.02562 * 5 4 2 38 38 H 1.07997 * 127.25137 * 179.85374 * 6 5 4 39 39 H 1.08992 * 109.22669 * 252.58236 * 11 10 8 40 40 H 1.09005 * 109.22802 * 11.99135 * 11 10 8 41 41 H 1.09005 * 109.89214 * 171.25038 * 12 11 10 42 42 H 1.08999 * 109.89468 * 292.28818 * 12 11 10 43 43 H 1.09008 * 110.95772 * 271.58965 * 15 13 12 44 44 H 1.08991 * 110.96485 * 35.28737 * 15 13 12 45 45 H 1.08995 * 109.92364 * 96.90027 * 16 15 13 46 46 H 1.09001 * 109.91963 * 218.00537 * 16 15 13 47 47 H 0.96996 * 120.00174 * 179.97438 * 21 20 18 48 48 H 1.08998 * 110.06528 * 350.47401 * 28 10 8 49 49 H 1.09007 * 110.06476 * 112.02764 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1793 -0.1167 2.4078 6 6 2.6481 -1.0716 3.2447 7 6 2.7462 -2.2460 2.4615 8 6 3.2054 -3.5729 2.9204 9 8 3.6624 -3.7044 4.0393 10 7 3.1175 -4.6377 2.0988 11 6 3.5049 -5.9654 2.5848 12 6 2.4310 -7.0091 2.2307 13 6 2.1540 -6.8847 0.7415 14 1 3.0660 -7.0243 0.1612 15 6 1.0203 -7.7790 0.2147 16 6 0.5318 -6.9774 -1.0224 17 7 0.9416 -5.5686 -0.8166 18 6 0.7953 -4.5410 -1.7097 19 1 1.1331 -3.5484 -1.4508 20 6 0.2128 -4.7752 -2.9478 21 7 -0.1985 -5.9849 -3.2634 22 14 0.0126 -3.3731 -4.1659 23 1 1.2196 -3.2895 -5.0271 24 1 -1.1828 -3.6192 -5.0117 25 1 -0.1579 -2.0962 -3.4273 26 6 1.5287 -5.4810 0.5120 27 1 0.7432 -5.3070 1.2474 28 6 2.6256 -4.4589 0.7167 29 7 2.3495 -1.9310 1.2447 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.9742 0.9129 2.6613 38 1 2.8915 -0.9616 4.2911 39 1 4.4507 -6.2535 2.1262 40 1 3.6269 -5.9299 3.6674 41 1 2.7979 -8.0103 2.4573 42 1 1.5206 -6.8111 2.7963 43 1 1.4003 -8.7573 -0.0798 44 1 0.2260 -7.8780 0.9544 45 1 0.9958 -7.3708 -1.9268 46 1 -0.5532 -7.0437 -1.1031 47 1 -0.6059 -6.1485 -4.1283 48 1 2.2263 -3.4528 0.5890 49 1 3.4337 -4.6345 0.0065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042252146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:45 Heat of formation + Delta-G solvation = 89.652633 kcal Electronic energy + Delta-G solvation = -30534.042968 eV Core-core repulsion = 26692.340099 eV Total energy + Delta-G solvation = -3841.702869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.63893 -39.82847 -38.06149 -35.86825 -35.08693 -33.03648 -31.51658 -30.84309 -30.14505 -29.12255 -28.30306 -27.53081 -25.09932 -24.17724 -23.20605 -22.60731 -21.42400 -20.30475 -19.98552 -19.61459 -18.87794 -17.33205 -16.69199 -16.49940 -15.88413 -15.49951 -14.87082 -14.78728 -14.51660 -14.26237 -14.08041 -13.71482 -13.58983 -13.32760 -13.14153 -13.01352 -12.97105 -12.56432 -12.40944 -12.35447 -11.97182 -11.83253 -11.57578 -11.53705 -11.33398 -11.24229 -10.89353 -10.84260 -10.70061 -10.54268 -10.12647 -9.97140 -9.80725 -9.70923 -9.57787 -9.20927 -8.98664 -8.94011 -8.61660 -8.24929 -6.81922 -5.70366 -3.02892 1.77547 2.24829 2.44704 3.31690 3.35372 3.38590 3.43055 3.68238 4.25788 4.47319 4.61088 4.68718 4.77414 4.84189 5.10136 5.12393 5.22949 5.29644 5.32623 5.40049 5.47954 5.52429 5.60559 5.68169 5.69039 5.76794 5.79825 5.83565 5.88911 5.93199 6.04714 6.05752 6.14781 6.24584 6.26309 6.32663 6.34630 6.56615 6.64219 6.69918 6.76954 6.84431 7.14958 7.22570 7.56644 7.64517 7.69611 7.83319 8.10514 8.25909 8.49410 9.20890 9.84176 10.53250 11.42427 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.008259 B = 0.006498 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3389.493762 B = 4307.789391 C = 7393.439638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.137 3.863 3 C -0.162 4.162 4 N -0.276 5.276 5 C -0.019 4.019 6 C -0.182 4.182 7 C -0.016 4.016 8 C 0.601 3.399 9 O -0.551 6.551 10 N -0.591 5.591 11 C 0.113 3.887 12 C -0.118 4.118 13 C -0.114 4.114 14 H 0.076 0.924 15 C -0.138 4.138 16 C 0.178 3.822 17 N -0.591 5.591 18 C -0.219 4.219 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.159 3.841 27 H 0.020 0.980 28 C 0.076 3.924 29 N -0.243 5.243 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.176 0.824 38 H 0.159 0.841 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.036 0.964 47 H 0.251 0.749 48 H 0.143 0.857 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.091 10.180 8.916 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.037 3.963 3 C -0.220 4.220 4 N -0.064 5.064 5 C -0.162 4.162 6 C -0.211 4.211 7 C -0.175 4.175 8 C 0.388 3.612 9 O -0.428 6.428 10 N -0.323 5.323 11 C -0.009 4.009 12 C -0.157 4.157 13 C -0.133 4.133 14 H 0.094 0.906 15 C -0.177 4.177 16 C 0.053 3.947 17 N -0.316 5.316 18 C -0.347 4.347 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C 0.050 3.950 27 H 0.038 0.962 28 C -0.047 4.047 29 N -0.078 5.078 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.132 0.868 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.194 0.806 38 H 0.176 0.824 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.159 0.841 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.028 9.770 8.087 13.307 hybrid contribution -0.142 0.944 -0.129 0.963 sum 3.886 10.714 7.958 13.900 Atomic orbital electron populations 1.22231 0.92591 1.04551 1.03051 1.21654 0.95893 0.93133 0.85648 1.22182 1.02341 0.93661 1.03812 1.46083 1.44690 1.06192 1.09392 1.22709 1.06973 1.00732 0.85747 1.21661 1.07191 0.91093 1.01107 1.21943 1.08406 0.96001 0.91139 1.17057 0.77915 0.82188 0.84057 1.90725 1.47260 1.84798 1.20029 1.48127 1.63476 1.06873 1.13841 1.21576 0.97166 0.81666 1.00497 1.21805 0.98927 0.98015 0.96958 1.22280 0.98655 0.98190 0.94221 0.90578 1.22730 0.97183 0.98056 0.99702 1.21522 0.97905 0.82311 0.92918 1.44149 1.69289 1.06080 1.12050 1.19020 1.33355 0.88510 0.93831 0.90306 1.24771 1.01360 0.96643 0.97771 1.69937 1.46269 1.18892 1.21890 0.86207 0.77290 0.81340 0.81465 1.21720 1.21804 1.20759 1.20845 0.92589 0.92263 0.89271 0.96229 1.22797 0.97366 1.05236 0.79319 1.73419 1.16018 0.96792 1.21537 0.90055 0.90519 0.91912 0.86825 0.91353 0.89667 0.91398 0.80637 0.82371 0.91954 0.89496 0.90961 0.91573 0.92332 0.92647 0.92714 0.94543 0.93843 0.84106 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.52 37.16 0.35 -1.44 16 2 C 0.14 1.50 3.80 -67.93 -0.26 1.25 16 3 C -0.16 -1.17 8.81 37.15 0.33 -0.85 16 4 N -0.28 -3.72 3.22 -54.83 -0.18 -3.89 16 5 C -0.02 -0.22 10.54 -17.17 -0.18 -0.40 16 6 C -0.18 -2.55 10.81 -39.36 -0.43 -2.98 16 7 C -0.02 -0.27 6.88 -82.76 -0.57 -0.84 16 8 C 0.60 11.17 7.68 -12.39 -0.10 11.07 16 9 O -0.55 -10.98 16.29 5.30 0.09 -10.89 16 10 N -0.59 -10.62 3.02 -174.17 -0.53 -11.15 16 11 C 0.11 1.77 6.32 -3.53 -0.02 1.75 16 12 C -0.12 -1.80 5.72 -26.79 -0.15 -1.95 16 13 C -0.11 -2.07 2.61 -89.51 -0.23 -2.31 16 14 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 15 C -0.14 -2.63 6.54 -25.15 -0.16 -2.79 16 16 C 0.18 4.30 5.45 -1.91 -0.01 4.29 16 17 N -0.59 -14.79 3.35 -163.16 -0.55 -15.34 16 18 C -0.22 -5.86 9.88 -15.06 -0.15 -6.01 16 19 H 0.08 2.03 7.41 -52.49 -0.39 1.64 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 21 N -0.92 -26.65 10.43 55.49 0.58 -26.08 16 22 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.16 3.37 2.74 -68.05 -0.19 3.19 16 27 H 0.02 0.46 7.93 -51.93 -0.41 0.05 16 28 C 0.08 1.49 5.49 -4.18 -0.02 1.47 16 29 N -0.24 -4.11 8.25 33.42 0.28 -3.83 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.40 7.06 -51.93 -0.37 0.03 16 37 H 0.18 1.31 7.17 -52.49 -0.38 0.93 16 38 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.34 6.98 -51.93 -0.36 0.98 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.04 7.99 -51.93 -0.41 0.62 16 43 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 44 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 45 H 0.05 1.46 7.21 -51.93 -0.37 1.08 16 46 H 0.04 0.97 7.77 -51.93 -0.40 0.56 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.14 2.86 3.49 -122.61 -0.43 2.43 16 49 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -32.35 380.75 -9.64 -41.98 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -8.16 Total: 4.10 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.89 Total: 3.11 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.39 Total: -60.29 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.35 -9.64 -41.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042252146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.634 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds