Wall clock time and date at job start Tue Mar 31 2020 17:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47066 * 2 1 4 4 N 1.46493 * 109.46902 * 180.02562 * 3 2 1 5 5 N 1.39944 * 125.75707 * 89.97924 * 4 3 2 6 6 C 1.30441 * 108.89890 * 179.97438 * 5 4 3 7 7 C 1.41293 * 108.02424 * 359.97438 * 6 5 4 8 8 C 1.47432 * 126.41394 * 179.97438 * 7 6 5 9 9 O 1.21601 * 119.99771 * 233.09860 * 8 7 6 10 10 N 1.34773 * 120.00162 * 53.10379 * 8 7 6 11 11 C 1.46506 * 119.99945 * 5.23123 * 10 8 7 12 12 C 1.46502 * 120.00018 * 185.23384 * 10 8 7 13 13 C 1.53498 * 114.20242 * 240.00007 * 12 10 8 14 14 N 1.47073 * 87.97998 * 220.14784 * 13 12 10 15 15 C 1.36934 * 136.05157 * 207.08496 * 14 13 12 16 16 H 1.08003 * 120.00458 * 353.91789 * 15 14 13 17 17 C 1.38815 * 119.99728 * 173.91905 * 15 14 13 18 18 N 1.31624 * 120.00165 * 180.15970 * 17 15 14 19 19 Si 1.86802 * 119.99901 * 0.15388 * 17 15 14 20 20 H 1.48498 * 109.46909 * 174.65950 * 19 17 15 21 21 H 1.48496 * 109.47380 * 294.65795 * 19 17 15 22 22 H 1.48499 * 109.46887 * 54.65795 * 19 17 15 23 23 C 1.47060 * 87.88579 * 27.34164 * 14 13 12 24 24 C 1.34264 * 125.75527 * 270.25948 * 4 3 2 25 25 C 1.50703 * 126.29067 * 0.02562 * 24 4 3 26 26 C 1.52993 * 117.49793 * 196.85597 * 25 24 4 27 27 C 1.52995 * 117.49963 * 128.19435 * 25 24 4 28 28 H 1.09002 * 109.47507 * 60.00248 * 1 2 3 29 29 H 1.09009 * 109.47073 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47490 * 299.99583 * 1 2 3 31 31 H 1.09003 * 109.47490 * 240.00417 * 2 1 3 32 32 H 1.09002 * 109.47507 * 119.99752 * 2 1 3 33 33 H 1.08994 * 109.46808 * 59.99914 * 3 2 1 34 34 H 1.09002 * 109.46755 * 300.00212 * 3 2 1 35 35 H 1.08004 * 125.98926 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.46600 * 275.11017 * 11 10 8 37 37 H 1.09001 * 109.47025 * 35.10979 * 11 10 8 38 38 H 1.08994 * 109.46941 * 155.11053 * 11 10 8 39 39 H 1.09001 * 113.27899 * 13.06190 * 12 10 8 40 40 H 1.08991 * 113.47276 * 105.36965 * 13 12 10 41 41 H 1.09004 * 113.46927 * 334.92017 * 13 12 10 42 42 H 0.97000 * 119.99916 * 5.03493 * 18 17 15 43 43 H 1.09001 * 113.46417 * 87.44045 * 23 14 13 44 44 H 1.08996 * 113.46631 * 217.87464 * 23 14 13 45 45 H 1.08997 * 115.54821 * 342.52709 * 25 24 4 46 46 H 1.09001 * 117.50391 * 359.97438 * 26 25 24 47 47 H 1.09007 * 117.50015 * 145.01959 * 26 25 24 48 48 H 1.09000 * 117.49837 * 214.98091 * 27 25 24 49 49 H 1.09002 * 117.50091 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 -0.0006 5 7 4.3221 1.4423 -1.1366 6 6 5.5706 1.4429 -0.7589 7 6 5.6000 1.4442 0.6538 8 6 6.8044 1.4446 1.5041 9 8 6.9361 0.6032 2.3721 10 7 7.7593 2.3776 1.3195 11 6 7.5500 3.4588 0.3533 12 6 9.0066 2.3106 2.0850 13 6 9.2733 3.5415 2.9625 14 7 10.6878 3.4500 2.5702 15 6 11.8890 3.8077 3.1219 16 1 11.9139 4.3728 4.0419 17 6 13.0747 3.4439 2.4985 18 7 14.2294 3.7849 3.0304 19 14 13.0316 2.4702 0.9049 20 1 14.4122 2.3210 0.3785 21 1 12.4517 1.1273 1.1608 22 1 12.1968 3.1882 -0.0914 23 6 10.2439 2.8115 1.3221 24 6 4.2898 1.4374 1.0886 25 6 3.8259 1.4302 2.5224 26 6 4.8440 1.8187 3.5963 27 6 4.4072 0.3592 3.4476 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6765 1.9564 -0.8900 35 1 6.4312 1.4425 -1.4115 36 1 7.8358 3.1173 -0.6416 37 1 6.4983 3.7454 0.3509 38 1 8.1600 4.3180 0.6317 39 1 9.1477 1.3583 2.5962 40 1 9.1049 3.3624 4.0244 41 1 8.7810 4.4454 2.6036 42 1 14.2543 4.2260 3.8939 43 1 10.0074 3.5229 0.5308 44 1 10.9024 2.0104 0.9864 45 1 2.7886 1.7243 2.6824 46 1 5.8496 2.0792 3.2659 47 1 4.4765 2.3682 4.4630 48 1 3.7524 -0.0509 4.2165 49 1 5.1248 -0.3404 3.0192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044163311.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:04 Heat of formation + Delta-G solvation = 144.339376 kcal Electronic energy + Delta-G solvation = -29412.256609 eV Core-core repulsion = 25572.925135 eV Total energy + Delta-G solvation = -3839.331474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.81261 -39.79048 -38.12687 -36.93665 -35.76910 -34.54305 -32.30960 -31.85082 -30.20659 -28.10071 -26.92533 -26.63698 -25.38671 -24.30998 -22.88679 -22.52512 -22.44527 -21.50698 -20.35040 -19.30528 -18.63789 -17.78171 -17.47773 -16.69812 -16.29882 -15.53993 -15.51886 -15.26275 -15.03555 -14.95009 -14.64301 -14.01060 -13.88714 -13.74908 -13.43051 -13.16587 -12.98414 -12.72837 -12.52429 -12.20169 -12.14753 -11.93154 -11.88202 -11.72722 -11.52163 -11.43922 -11.35920 -11.29128 -11.17426 -10.97375 -10.54323 -10.50306 -10.42912 -9.68201 -9.43429 -9.30579 -9.10420 -8.96967 -8.61263 -8.23220 -7.18244 -6.31725 -3.25858 1.40915 2.07609 2.19380 2.98402 3.28109 3.41255 3.45251 3.66222 3.78830 4.07694 4.14414 4.34062 4.53847 4.58732 4.60845 4.66217 4.72047 4.80134 4.87608 4.90651 4.93422 5.04453 5.10678 5.16847 5.28921 5.34747 5.41200 5.45854 5.48356 5.57129 5.61170 5.62833 5.70787 5.71198 5.76791 5.88131 5.90084 6.05936 6.16259 6.21776 6.22797 6.29156 6.37468 6.54192 6.64955 6.97946 7.07764 7.42387 7.61958 8.22238 8.37690 8.95970 9.47691 10.31911 11.19769 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.002838 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.374767 B = 9863.265540 C =10447.127899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.131 3.869 4 N -0.359 5.359 5 N -0.298 5.298 6 C 0.087 3.913 7 C -0.286 4.286 8 C 0.595 3.405 9 O -0.536 6.536 10 N -0.595 5.595 11 C 0.080 3.920 12 C 0.103 3.897 13 C 0.112 3.888 14 N -0.621 5.621 15 C -0.301 4.301 16 H 0.084 0.916 17 C -0.024 4.024 18 N -0.933 5.933 19 Si 1.074 2.926 20 H -0.295 1.295 21 H -0.291 1.291 22 H -0.289 1.289 23 C 0.089 3.911 24 C 0.177 3.823 25 C -0.126 4.126 26 C -0.158 4.158 27 C -0.145 4.145 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.189 0.811 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.050 0.950 41 H 0.040 0.960 42 H 0.261 0.739 43 H 0.048 0.952 44 H 0.054 0.946 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.097 0.903 48 H 0.095 0.905 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.503 -4.827 -6.378 30.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.010 3.990 4 N -0.138 5.138 5 N -0.116 5.116 6 C -0.101 4.101 7 C -0.301 4.301 8 C 0.384 3.616 9 O -0.414 6.414 10 N -0.327 5.327 11 C -0.063 4.063 12 C -0.001 4.001 13 C -0.015 4.015 14 N -0.350 5.350 15 C -0.428 4.428 16 H 0.101 0.899 17 C -0.222 4.222 18 N -0.575 5.575 19 Si 0.907 3.093 20 H -0.223 1.223 21 H -0.220 1.220 22 H -0.217 1.217 23 C -0.038 4.038 24 C 0.046 3.954 25 C -0.146 4.146 26 C -0.196 4.196 27 C -0.183 4.183 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.206 0.794 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.143 0.857 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.115 0.885 48 H 0.113 0.887 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -29.159 -5.791 -8.038 30.796 hybrid contribution -0.507 0.941 1.645 1.962 sum -29.666 -4.850 -6.392 30.732 Atomic orbital electron populations 1.21694 0.94180 1.02611 1.02195 1.21944 0.96725 0.95629 1.03734 1.21839 0.73913 0.98749 1.04544 1.48342 1.06455 1.56009 1.03041 1.77170 1.01765 1.25472 1.07243 1.23943 0.95196 0.97471 0.93440 1.19920 0.92676 1.23530 0.93961 1.17268 0.81611 0.80631 0.82135 1.90745 1.78335 1.38335 1.34018 1.47797 1.17181 1.26657 1.41058 1.21788 1.01874 0.90611 0.92055 1.23568 0.81411 1.00946 0.94178 1.22753 0.85961 0.94787 0.98045 1.45762 1.01055 1.71974 1.16164 1.20133 0.80839 1.33324 1.08459 0.89854 1.25737 0.90735 1.00407 1.05370 1.70925 1.24408 1.43110 1.19080 0.83649 0.74217 0.75834 0.75577 1.22269 1.21965 1.21663 1.23217 0.92805 0.96048 0.91681 1.20440 0.89526 0.96416 0.89016 1.20516 0.99089 1.09646 0.85342 1.23288 0.99656 0.98600 0.98016 1.23233 1.02437 0.92997 0.99597 0.92240 0.91862 0.92308 0.90834 0.91033 0.88889 0.88439 0.79420 0.92620 0.91545 0.90259 0.85670 0.93164 0.94286 0.92891 0.93440 0.92861 0.86800 0.86920 0.88451 0.88674 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.15 0.37 -0.25 16 2 C -0.14 -0.88 6.26 -26.73 -0.17 -1.04 16 3 C 0.13 0.88 6.21 -4.04 -0.03 0.86 16 4 N -0.36 -3.78 3.58 -56.60 -0.20 -3.98 16 5 N -0.30 -3.60 12.50 30.86 0.39 -3.21 16 6 C 0.09 1.03 10.73 -16.98 -0.18 0.85 16 7 C -0.29 -3.75 4.61 -105.06 -0.48 -4.23 16 8 C 0.60 9.05 5.21 -12.52 -0.07 8.99 16 9 O -0.54 -9.43 12.30 5.28 0.06 -9.37 16 10 N -0.59 -8.97 3.12 -174.82 -0.54 -9.51 16 11 C 0.08 0.97 8.16 59.85 0.49 1.46 16 12 C 0.10 1.89 4.55 -67.68 -0.31 1.59 16 13 C 0.11 2.23 8.23 -8.50 -0.07 2.16 16 14 N -0.62 -15.33 3.68 -184.62 -0.68 -16.01 16 15 C -0.30 -8.72 11.09 -15.06 -0.17 -8.89 16 16 H 0.08 2.53 8.05 -52.48 -0.42 2.11 16 17 C -0.02 -0.71 5.50 -17.43 -0.10 -0.80 16 18 N -0.93 -29.55 13.70 55.49 0.76 -28.79 16 19 Si 1.07 27.04 25.01 -169.99 -4.25 22.79 16 20 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 21 H -0.29 -7.02 6.62 56.52 0.37 -6.65 16 22 H -0.29 -6.71 6.48 56.52 0.37 -6.35 16 23 C 0.09 1.87 5.35 -8.37 -0.04 1.82 16 24 C 0.18 2.06 6.66 -81.60 -0.54 1.52 16 25 C -0.13 -1.25 5.94 -91.78 -0.55 -1.80 16 26 C -0.16 -1.80 9.46 -26.70 -0.25 -2.05 16 27 C -0.15 -1.57 9.57 -26.70 -0.26 -1.82 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.26 8.14 -51.92 -0.42 -0.17 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.46 7.13 -51.93 -0.37 0.09 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.19 1.82 7.78 -52.48 -0.41 1.41 16 36 H 0.06 0.59 7.79 -51.93 -0.40 0.19 16 37 H 0.07 0.73 7.06 -51.93 -0.37 0.36 16 38 H 0.08 1.01 5.97 -51.93 -0.31 0.70 16 39 H 0.13 2.49 7.33 -51.93 -0.38 2.11 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.72 7.04 -51.93 -0.37 0.36 16 42 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 43 H 0.05 0.93 6.41 -51.93 -0.33 0.60 16 44 H 0.05 1.19 3.95 -51.93 -0.20 0.98 16 45 H 0.11 0.83 7.22 -51.93 -0.37 0.46 16 46 H 0.11 1.61 4.55 -51.93 -0.24 1.37 16 47 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.12 1.63 6.32 -51.93 -0.33 1.30 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -34.45 380.16 -8.61 -43.07 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.52 Total: 0.94 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.35 Total: -1.65 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.28 Total: -61.51 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.06 Total: -9.37 kcal Atomic # 14 Polarization: 27.04 SS G_CDS: -4.25 Total: 22.79 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.45 -8.61 -43.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044163311.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.407 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds