Wall clock time and date at job start Tue Mar 31 2020 17:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47066 * 2 1 4 4 N 1.46493 * 109.46902 * 180.02562 * 3 2 1 5 5 N 1.39944 * 125.75707 * 89.97924 * 4 3 2 6 6 C 1.30441 * 108.89890 * 179.97438 * 5 4 3 7 7 C 1.41293 * 108.02424 * 359.97438 * 6 5 4 8 8 C 1.47432 * 126.41394 * 179.97438 * 7 6 5 9 9 O 1.21601 * 119.99771 * 233.09860 * 8 7 6 10 10 N 1.34773 * 120.00162 * 53.10379 * 8 7 6 11 11 C 1.46506 * 119.99945 * 5.23123 * 10 8 7 12 12 C 1.46502 * 120.00018 * 185.23384 * 10 8 7 13 13 C 1.53498 * 114.20242 * 240.00007 * 12 10 8 14 14 N 1.47073 * 87.97998 * 220.14784 * 13 12 10 15 15 C 1.36934 * 136.05157 * 207.08496 * 14 13 12 16 16 H 1.08003 * 120.00458 * 353.91789 * 15 14 13 17 17 C 1.38815 * 119.99728 * 173.91905 * 15 14 13 18 18 N 1.31624 * 120.00165 * 180.15970 * 17 15 14 19 19 Si 1.86802 * 119.99901 * 0.15388 * 17 15 14 20 20 H 1.48498 * 109.46909 * 174.65950 * 19 17 15 21 21 H 1.48496 * 109.47380 * 294.65795 * 19 17 15 22 22 H 1.48499 * 109.46887 * 54.65795 * 19 17 15 23 23 C 1.47060 * 87.88579 * 27.34164 * 14 13 12 24 24 C 1.34264 * 125.75527 * 270.25948 * 4 3 2 25 25 C 1.50703 * 126.29067 * 0.02562 * 24 4 3 26 26 C 1.52993 * 117.49793 * 196.85597 * 25 24 4 27 27 C 1.52995 * 117.49963 * 128.19435 * 25 24 4 28 28 H 1.09002 * 109.47507 * 60.00248 * 1 2 3 29 29 H 1.09009 * 109.47073 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47490 * 299.99583 * 1 2 3 31 31 H 1.09003 * 109.47490 * 240.00417 * 2 1 3 32 32 H 1.09002 * 109.47507 * 119.99752 * 2 1 3 33 33 H 1.08994 * 109.46808 * 59.99914 * 3 2 1 34 34 H 1.09002 * 109.46755 * 300.00212 * 3 2 1 35 35 H 1.08004 * 125.98926 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.46600 * 275.11017 * 11 10 8 37 37 H 1.09001 * 109.47025 * 35.10979 * 11 10 8 38 38 H 1.08994 * 109.46941 * 155.11053 * 11 10 8 39 39 H 1.09001 * 113.27899 * 13.06190 * 12 10 8 40 40 H 1.08991 * 113.47276 * 105.36965 * 13 12 10 41 41 H 1.09004 * 113.46927 * 334.92017 * 13 12 10 42 42 H 0.97000 * 119.99916 * 5.03493 * 18 17 15 43 43 H 1.09001 * 113.46417 * 87.44045 * 23 14 13 44 44 H 1.08996 * 113.46631 * 217.87464 * 23 14 13 45 45 H 1.08997 * 115.54821 * 342.52709 * 25 24 4 46 46 H 1.09001 * 117.50391 * 359.97438 * 26 25 24 47 47 H 1.09007 * 117.50015 * 145.01959 * 26 25 24 48 48 H 1.09000 * 117.49837 * 214.98091 * 27 25 24 49 49 H 1.09002 * 117.50091 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 -0.0006 5 7 4.3221 1.4423 -1.1366 6 6 5.5706 1.4429 -0.7589 7 6 5.6000 1.4442 0.6538 8 6 6.8044 1.4446 1.5041 9 8 6.9361 0.6032 2.3721 10 7 7.7593 2.3776 1.3195 11 6 7.5500 3.4588 0.3533 12 6 9.0066 2.3106 2.0850 13 6 9.2733 3.5415 2.9625 14 7 10.6878 3.4500 2.5702 15 6 11.8890 3.8077 3.1219 16 1 11.9139 4.3728 4.0419 17 6 13.0747 3.4439 2.4985 18 7 14.2294 3.7849 3.0304 19 14 13.0316 2.4702 0.9049 20 1 14.4122 2.3210 0.3785 21 1 12.4517 1.1273 1.1608 22 1 12.1968 3.1882 -0.0914 23 6 10.2439 2.8115 1.3221 24 6 4.2898 1.4374 1.0886 25 6 3.8259 1.4302 2.5224 26 6 4.8440 1.8187 3.5963 27 6 4.4072 0.3592 3.4476 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6765 1.9564 -0.8900 35 1 6.4312 1.4425 -1.4115 36 1 7.8358 3.1173 -0.6416 37 1 6.4983 3.7454 0.3509 38 1 8.1600 4.3180 0.6317 39 1 9.1477 1.3583 2.5962 40 1 9.1049 3.3624 4.0244 41 1 8.7810 4.4454 2.6036 42 1 14.2543 4.2260 3.8939 43 1 10.0074 3.5229 0.5308 44 1 10.9024 2.0104 0.9864 45 1 2.7886 1.7243 2.6824 46 1 5.8496 2.0792 3.2659 47 1 4.4765 2.3682 4.4630 48 1 3.7524 -0.0509 4.2165 49 1 5.1248 -0.3404 3.0192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044163311.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:47 Heat of formation + Delta-G solvation = 121.734258 kcal Electronic energy + Delta-G solvation = -29413.236840 eV Core-core repulsion = 25572.925135 eV Total energy + Delta-G solvation = -3840.311705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.70774 -41.15034 -39.50545 -37.84863 -36.35823 -35.89153 -34.39416 -32.57849 -31.20162 -29.81657 -27.92926 -27.51571 -27.06210 -25.39166 -24.23034 -23.35706 -23.05784 -22.64405 -21.51133 -20.64836 -19.72561 -19.58722 -18.67107 -17.89474 -17.53036 -16.99373 -16.50777 -16.17443 -15.98132 -15.81822 -15.57118 -15.49385 -15.14566 -15.02658 -14.70287 -14.11796 -14.01428 -13.73632 -13.56965 -13.33597 -13.20497 -13.15767 -13.12062 -12.92079 -12.64842 -12.35672 -12.31007 -12.29318 -12.19747 -12.10081 -11.94341 -11.67435 -11.35347 -11.31009 -11.13977 -11.05480 -10.80036 -10.22568 -9.61551 -9.46954 -9.24217 -8.65573 -5.51427 0.51895 1.21771 1.34536 1.38495 1.48649 1.68357 1.85377 2.11272 2.52694 2.96788 2.99701 3.21269 3.33491 3.43022 3.56074 3.78664 3.83720 3.89269 3.95735 4.04454 4.08198 4.11142 4.25349 4.26769 4.33793 4.39099 4.49397 4.53681 4.55993 4.56624 4.65608 4.70386 4.74287 4.80762 4.82163 4.93343 4.98016 5.07432 5.11298 5.12959 5.14664 5.20220 5.34523 5.35341 5.41582 5.63341 5.89378 5.92020 6.43491 6.56747 6.66856 7.20395 7.28328 8.20861 8.88310 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.002838 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.374767 B = 9863.265540 C =10447.127899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.121 3.879 4 N -0.353 5.353 5 N -0.313 5.313 6 C 0.087 3.913 7 C -0.308 4.308 8 C 0.599 3.401 9 O -0.566 6.566 10 N -0.593 5.593 11 C 0.077 3.923 12 C 0.129 3.871 13 C 0.115 3.885 14 N -0.654 5.654 15 C -0.288 4.288 16 H 0.052 0.948 17 C -0.083 4.083 18 N -0.969 5.969 19 Si 1.111 2.889 20 H -0.304 1.304 21 H -0.278 1.278 22 H -0.254 1.254 23 C 0.087 3.913 24 C 0.176 3.824 25 C -0.111 4.111 26 C -0.170 4.170 27 C -0.147 4.147 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.206 0.794 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.044 0.956 41 H 0.064 0.936 42 H 0.247 0.753 43 H 0.074 0.926 44 H 0.046 0.954 45 H 0.149 0.851 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.121 0.879 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.360 -4.841 -8.156 34.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.002 3.998 4 N -0.131 5.131 5 N -0.132 5.132 6 C -0.100 4.100 7 C -0.323 4.323 8 C 0.389 3.611 9 O -0.446 6.446 10 N -0.325 5.325 11 C -0.065 4.065 12 C 0.023 3.977 13 C -0.011 4.011 14 N -0.383 5.383 15 C -0.416 4.416 16 H 0.070 0.930 17 C -0.275 4.275 18 N -0.614 5.614 19 Si 0.937 3.063 20 H -0.232 1.232 21 H -0.206 1.206 22 H -0.179 1.179 23 C -0.038 4.038 24 C 0.043 3.957 25 C -0.130 4.130 26 C -0.208 4.208 27 C -0.185 4.185 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.222 0.778 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.167 0.833 46 H 0.100 0.900 47 H 0.135 0.865 48 H 0.139 0.861 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -33.115 -5.789 -9.847 35.029 hybrid contribution 0.525 0.952 2.274 2.521 sum -32.589 -4.837 -7.573 33.806 Atomic orbital electron populations 1.21670 0.92403 1.02963 1.03173 1.21872 0.98132 0.94964 1.02426 1.22239 0.71799 0.99441 1.06354 1.48642 1.07598 1.54671 1.02232 1.77140 1.02015 1.25885 1.08180 1.24205 0.95756 0.96962 0.93056 1.19804 0.92355 1.25788 0.94307 1.17528 0.81932 0.79860 0.81763 1.90739 1.78937 1.39512 1.35416 1.47710 1.15879 1.27613 1.41252 1.21979 1.02890 0.89479 0.92153 1.22847 0.82352 0.99193 0.93306 1.22904 0.83507 0.96468 0.98258 1.45774 1.01488 1.72521 1.18488 1.19977 0.83027 1.31348 1.07221 0.93010 1.27064 0.90405 1.01582 1.08421 1.71025 1.25789 1.45495 1.19066 0.83238 0.74423 0.75604 0.73012 1.23215 1.20559 1.17938 1.23402 0.93335 0.95962 0.91091 1.20695 0.89378 0.95557 0.90060 1.20679 1.00247 1.08198 0.83909 1.23230 0.98748 0.99288 0.99495 1.23161 1.02444 0.92318 1.00577 0.91625 0.91877 0.90962 0.92685 0.91829 0.86315 0.87435 0.77768 0.90528 0.90082 0.90586 0.87479 0.93794 0.91884 0.94416 0.90829 0.93625 0.83341 0.89980 0.86522 0.86121 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.91 71.98 0.71 -0.05 16 2 C -0.14 -1.34 6.26 30.59 0.19 -1.15 16 3 C 0.12 1.24 6.21 86.38 0.54 1.77 16 4 N -0.35 -6.47 3.58 -333.00 -1.19 -7.66 16 5 N -0.31 -6.84 12.50 -56.27 -0.70 -7.55 16 6 C 0.09 1.87 10.73 85.65 0.92 2.79 16 7 C -0.31 -7.52 4.61 -20.15 -0.09 -7.61 16 8 C 0.60 17.60 5.21 86.67 0.45 18.06 16 9 O -0.57 -20.01 12.30 -4.03 -0.05 -20.05 16 10 N -0.59 -16.82 3.12 -825.27 -2.57 -19.39 16 11 C 0.08 1.64 8.16 127.77 1.04 2.68 16 12 C 0.13 4.58 4.55 45.55 0.21 4.79 16 13 C 0.12 4.49 8.23 83.18 0.68 5.17 16 14 N -0.65 -32.00 3.68 -738.01 -2.72 -34.72 16 15 C -0.29 -17.05 11.09 84.03 0.93 -16.12 16 16 H 0.05 3.30 8.05 -2.91 -0.02 3.28 16 17 C -0.08 -5.03 5.50 84.86 0.47 -4.57 16 18 N -0.97 -63.38 13.70 21.65 0.30 -63.09 16 19 Si 1.11 54.25 25.01 68.60 1.72 55.96 16 20 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 21 H -0.28 -12.85 6.62 99.48 0.66 -12.19 16 22 H -0.25 -10.85 6.48 99.48 0.65 -10.21 16 23 C 0.09 3.50 5.35 83.27 0.45 3.94 16 24 C 0.18 3.68 6.66 42.14 0.28 3.96 16 25 C -0.11 -1.88 5.94 -11.54 -0.07 -1.95 16 26 C -0.17 -3.59 9.46 30.62 0.29 -3.30 16 27 C -0.15 -2.96 9.57 30.62 0.29 -2.67 16 28 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.12 0.63 7.13 -2.39 -0.02 0.61 16 34 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.21 3.42 7.78 -2.91 -0.02 3.39 16 36 H 0.08 1.34 7.79 -2.39 -0.02 1.32 16 37 H 0.08 1.52 7.06 -2.39 -0.02 1.51 16 38 H 0.08 1.69 5.97 -2.39 -0.01 1.67 16 39 H 0.11 4.27 7.33 -2.39 -0.02 4.25 16 40 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.06 2.20 7.04 -2.38 -0.02 2.18 16 42 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 43 H 0.07 2.62 6.41 -2.39 -0.02 2.60 16 44 H 0.05 1.93 3.95 -2.39 -0.01 1.92 16 45 H 0.15 1.48 7.22 -2.39 -0.02 1.46 16 46 H 0.08 2.29 4.55 -2.39 -0.01 2.28 16 47 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 48 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.09 2.40 6.32 -2.39 -0.02 2.39 16 Total: -1.00 -77.70 380.16 2.89 -74.82 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.81 Total: 15.94 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 7.29 Total: 5.75 kcal Atomic # 7 Polarization: -125.52 SS G_CDS: -6.89 Total: -132.41 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.05 Total: -20.05 kcal Atomic # 14 Polarization: 54.25 SS G_CDS: 1.72 Total: 55.96 kcal Total: -77.70 2.89 -74.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044163311.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.551 kcal (2) G-P(sol) polarization free energy of solvation -77.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds