Wall clock time and date at job start Tue Mar 31 2020 17:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47189 * 2 1 4 4 N 1.46496 * 109.47359 * 184.78418 * 3 2 1 5 5 N 1.28434 * 125.19584 * 249.58011 * 4 3 2 6 6 C 1.30863 * 110.93452 * 180.02562 * 5 4 3 7 7 C 1.39675 * 107.85552 * 0.02562 * 6 5 4 8 8 C 1.36603 * 125.18833 * 69.60130 * 4 3 2 9 9 C 1.47165 * 126.88445 * 0.02562 * 8 4 3 10 10 O 1.21628 * 120.00319 * 201.77351 * 9 8 4 11 11 N 1.34779 * 119.99705 * 21.78191 * 9 8 4 12 12 C 1.46506 * 119.99838 * 185.84151 * 11 9 8 13 13 H 1.08996 * 109.32583 * 56.46934 * 12 11 9 14 14 C 1.53036 * 109.32218 * 296.99921 * 12 11 9 15 15 C 1.53966 * 108.82755 * 295.14357 * 14 12 11 16 16 H 1.09000 * 112.99123 * 168.09990 * 15 14 12 17 17 C 1.55428 * 106.41576 * 293.82033 * 15 14 12 18 18 C 1.55175 * 100.35202 * 73.38156 * 17 15 14 19 19 H 1.08991 * 113.05358 * 162.99059 * 18 17 15 20 20 C 1.52989 * 109.32591 * 176.11389 * 12 11 9 21 21 N 1.47790 * 104.25276 * 40.54751 * 18 17 15 22 22 C 1.36935 * 125.85678 * 153.54460 * 21 18 17 23 23 H 1.07997 * 119.99819 * 10.02229 * 22 21 18 24 24 C 1.38811 * 120.00111 * 190.02912 * 22 21 18 25 25 N 1.31619 * 120.00014 * 0.84636 * 24 22 21 26 26 Si 1.86798 * 119.99864 * 180.84574 * 24 22 21 27 27 H 1.48501 * 109.47512 * 94.03265 * 26 24 22 28 28 H 1.48505 * 109.47114 * 214.03405 * 26 24 22 29 29 H 1.48503 * 109.47303 * 334.02988 * 26 24 22 30 30 C 1.47083 * 108.28870 * 333.53934 * 21 18 17 31 31 H 1.09001 * 109.46844 * 175.02789 * 1 2 3 32 32 H 1.09003 * 109.46680 * 295.02328 * 1 2 3 33 33 H 1.08995 * 109.47259 * 55.02355 * 1 2 3 34 34 H 1.09005 * 109.46735 * 240.00392 * 2 1 3 35 35 H 1.08995 * 109.47163 * 120.00367 * 2 1 3 36 36 H 1.09000 * 109.46430 * 64.78843 * 3 2 1 37 37 H 1.08997 * 109.47161 * 304.78858 * 3 2 1 38 38 H 1.08001 * 126.07531 * 180.02562 * 6 5 4 39 39 H 1.07999 * 127.31455 * 180.26196 * 7 6 5 40 40 H 0.97002 * 120.00229 * 5.83759 * 11 9 8 41 41 H 1.09000 * 109.57508 * 54.95053 * 14 12 11 42 42 H 1.09006 * 109.57135 * 175.33918 * 14 12 11 43 43 H 1.09001 * 111.23971 * 315.60570 * 17 15 14 44 44 H 1.08998 * 111.23709 * 191.15135 * 17 15 14 45 45 H 1.08996 * 109.53427 * 185.06282 * 20 12 11 46 46 H 1.09002 * 109.53072 * 305.21336 * 20 12 11 47 47 H 0.97000 * 119.99710 * 184.99233 * 25 24 22 48 48 H 1.09002 * 109.97582 * 120.45589 * 30 21 18 49 49 H 1.09004 * 109.97765 * 241.74074 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5005 1.4442 -0.1152 5 7 4.3162 1.7837 0.8170 6 6 5.5566 1.6816 0.4129 7 6 5.5407 1.2328 -0.9097 8 6 4.2025 1.0852 -1.2307 9 6 3.6472 0.6338 -2.5166 10 8 4.3334 -0.0189 -3.2798 11 7 2.3783 0.9439 -2.8486 12 6 1.7835 0.3889 -4.0671 13 1 1.8397 -0.6990 -4.0327 14 6 2.5599 0.8944 -5.2851 15 6 2.3830 2.4204 -5.3889 16 1 3.0664 2.8806 -6.1025 17 6 0.8815 2.6680 -5.7052 18 6 0.2490 2.3455 -4.3254 19 1 -0.7657 2.7294 -4.2208 20 6 0.3175 0.8175 -4.1554 21 7 1.1825 2.9438 -3.3484 22 6 0.8582 3.3773 -2.0906 23 1 -0.1126 3.1509 -1.6751 24 6 1.7770 4.1079 -1.3497 25 7 2.9539 4.3982 -1.8626 26 14 1.3432 4.6789 0.3751 27 1 1.8373 3.6872 1.3639 28 1 1.9786 5.9958 0.6350 29 1 -0.1311 4.8079 0.4977 30 6 2.5199 2.9938 -3.9586 31 1 -0.3633 -1.0238 -0.0891 32 1 -0.3633 0.4347 0.9313 33 1 -0.3633 0.5891 -0.8420 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.7484 1.9309 0.9298 37 1 1.6084 1.9805 -0.8440 38 1 6.4365 1.9048 0.9980 39 1 6.3918 1.0372 -1.5450 40 1 1.8588 1.5344 -2.2808 41 1 3.6172 0.6563 -5.1689 42 1 2.1736 0.4197 -6.1871 43 1 0.5219 1.9840 -6.4739 44 1 0.7035 3.7055 -5.9882 45 1 -0.1526 0.3341 -5.0118 46 1 -0.2026 0.5277 -3.2424 47 1 3.6224 4.8451 -1.3202 48 1 2.8708 4.0248 -4.0028 49 1 3.2164 2.3875 -3.3794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047079447.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:06 Heat of formation + Delta-G solvation = 129.505722 kcal Electronic energy + Delta-G solvation = -33265.808109 eV Core-core repulsion = 29425.833400 eV Total energy + Delta-G solvation = -3839.974709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.95485 -40.63443 -37.72470 -35.40160 -33.84850 -33.05962 -31.07257 -30.90340 -30.68210 -29.80473 -27.85669 -26.16005 -25.38152 -23.36314 -23.06979 -21.81238 -20.93674 -20.82606 -19.79746 -19.30397 -18.77842 -17.37821 -16.88213 -15.79193 -15.46730 -15.11359 -14.97213 -14.93225 -14.61719 -13.99233 -13.69430 -13.63970 -13.30547 -12.86457 -12.76010 -12.57766 -12.37758 -12.24776 -11.96319 -11.87570 -11.74135 -11.71258 -11.59981 -11.55710 -11.28652 -11.00332 -10.80528 -10.63396 -10.39420 -10.26848 -10.16873 -9.94889 -9.79162 -9.68033 -9.51325 -9.07306 -8.83689 -8.42574 -8.28022 -7.55258 -7.07354 -6.03827 -3.46698 2.07399 3.13217 3.16044 3.21306 3.29107 3.30288 3.79921 4.11781 4.13745 4.99307 5.03615 5.14740 5.18616 5.22208 5.36255 5.37589 5.40054 5.52248 5.56317 5.74857 5.77064 5.86377 5.87885 5.88379 5.98456 6.00841 6.05574 6.11270 6.18283 6.18829 6.24452 6.31217 6.35413 6.39699 6.46886 6.55910 6.59668 6.70644 6.80134 6.85076 6.92571 7.16582 7.31844 7.33144 7.46683 7.56852 7.69252 8.00017 8.46856 8.77231 8.86498 9.04430 9.44165 10.18680 10.95569 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.008007 C = 0.006741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.504545 B = 3495.945976 C = 4152.663956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.052 3.948 4 N -0.244 5.244 5 N -0.287 5.287 6 C -0.019 4.019 7 C -0.180 4.180 8 C -0.012 4.012 9 C 0.583 3.417 10 O -0.556 6.556 11 N -0.691 5.691 12 C 0.161 3.839 13 H 0.059 0.941 14 C -0.130 4.130 15 C -0.118 4.118 16 H 0.075 0.925 17 C -0.126 4.126 18 C 0.150 3.850 19 H 0.068 0.932 20 C -0.143 4.143 21 N -0.598 5.598 22 C -0.275 4.275 23 H 0.083 0.917 24 C 0.014 3.986 25 N -0.873 5.873 26 Si 0.877 3.123 27 H -0.266 1.266 28 H -0.285 1.285 29 H -0.274 1.274 30 C 0.144 3.856 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.163 0.837 38 H 0.176 0.824 39 H 0.152 0.848 40 H 0.434 0.566 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.261 0.739 48 H 0.051 0.949 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.685 -6.770 -1.166 7.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C -0.066 4.066 4 N -0.032 5.032 5 N -0.120 5.120 6 C -0.195 4.195 7 C -0.209 4.209 8 C -0.141 4.141 9 C 0.369 3.631 10 O -0.435 6.435 11 N -0.357 5.357 12 C 0.056 3.944 13 H 0.077 0.923 14 C -0.168 4.168 15 C -0.137 4.137 16 H 0.093 0.907 17 C -0.164 4.164 18 C 0.043 3.957 19 H 0.086 0.914 20 C -0.183 4.183 21 N -0.325 5.325 22 C -0.402 4.402 23 H 0.101 0.899 24 C -0.189 4.189 25 N -0.514 5.514 26 Si 0.705 3.295 27 H -0.192 1.192 28 H -0.211 1.211 29 H -0.199 1.199 30 C 0.020 3.980 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.179 0.821 38 H 0.193 0.807 39 H 0.170 0.830 40 H 0.290 0.710 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.975 -6.706 -0.575 7.817 hybrid contribution 0.235 0.667 0.511 0.872 sum -3.740 -6.039 -0.064 7.104 Atomic orbital electron populations 1.21679 0.94083 1.02051 1.02726 1.21953 0.97258 0.96042 1.02725 1.23784 0.73834 0.99167 1.09857 1.45665 1.07045 1.43428 1.07051 1.73051 1.01406 1.19047 1.18510 1.23321 0.94303 1.06506 0.95339 1.21905 0.94829 1.07306 0.96883 1.21587 0.92550 1.09484 0.90454 1.16984 0.82673 0.79355 0.84110 1.90688 1.60213 1.41500 1.51148 1.47550 1.13579 1.48586 1.25988 1.20664 0.92587 0.96018 0.85152 0.92315 1.22154 1.02142 0.96023 0.96526 1.22781 0.95743 0.95198 0.99963 0.90654 1.22946 0.96301 1.00380 0.96794 1.21617 0.94268 0.90607 0.89253 0.91433 1.22573 0.94622 0.99892 1.01236 1.44895 1.04242 1.71264 1.12053 1.19076 1.01143 1.29920 0.90084 0.89884 1.25051 0.97009 0.97667 0.99191 1.69963 1.04451 1.42122 1.34899 0.86842 0.78343 0.79592 0.84701 1.19222 1.21092 1.19894 1.22109 0.87649 1.00106 0.88179 0.92225 0.92441 0.91438 0.91269 0.91935 0.88329 0.82088 0.80688 0.83038 0.71029 0.90035 0.92499 0.92162 0.92120 0.91494 0.92112 0.92843 0.93054 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.14 -2.29 5.88 -26.73 -0.16 -2.45 16 3 C 0.05 1.02 3.65 -4.04 -0.01 1.00 16 4 N -0.24 -5.12 3.41 -57.14 -0.20 -5.32 16 5 N -0.29 -6.01 11.90 30.59 0.36 -5.65 16 6 C -0.02 -0.36 12.03 -17.43 -0.21 -0.57 16 7 C -0.18 -3.59 10.91 -38.99 -0.43 -4.02 16 8 C -0.01 -0.27 6.67 -82.06 -0.55 -0.81 16 9 C 0.58 12.69 4.78 -12.64 -0.06 12.63 16 10 O -0.56 -12.80 15.06 5.25 0.08 -12.72 16 11 N -0.69 -13.73 1.66 -54.95 -0.09 -13.82 16 12 C 0.16 2.83 2.86 -67.91 -0.19 2.64 16 13 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.13 -2.29 5.10 -26.21 -0.13 -2.42 16 15 C -0.12 -2.18 4.33 -87.93 -0.38 -2.57 16 16 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 17 C -0.13 -2.08 6.18 -24.29 -0.15 -2.23 16 18 C 0.15 2.66 4.30 -65.61 -0.28 2.38 16 19 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 20 C -0.14 -2.23 5.39 -26.27 -0.14 -2.37 16 21 N -0.60 -12.77 1.76 -161.37 -0.28 -13.05 16 22 C -0.28 -6.28 6.84 -15.06 -0.10 -6.38 16 23 H 0.08 1.82 7.83 -52.49 -0.41 1.41 16 24 C 0.01 0.33 4.13 -17.43 -0.07 0.26 16 25 N -0.87 -22.62 10.45 55.49 0.58 -22.04 16 26 Si 0.88 19.55 27.34 -169.99 -4.65 14.90 16 27 H -0.27 -5.83 5.51 56.52 0.31 -5.52 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 29 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 30 C 0.14 3.22 4.00 -2.83 -0.01 3.21 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.19 6.42 -51.93 -0.33 0.86 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.10 1.95 5.75 -51.93 -0.30 1.65 16 37 H 0.16 3.33 1.55 -51.93 -0.08 3.25 16 38 H 0.18 2.56 8.06 -52.49 -0.42 2.14 16 39 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 40 H 0.43 8.79 1.82 -40.82 -0.07 8.72 16 41 H 0.08 1.62 6.07 -51.93 -0.32 1.30 16 42 H 0.06 0.86 7.97 -51.93 -0.41 0.44 16 43 H 0.06 0.85 7.75 -51.93 -0.40 0.44 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 0.87 8.00 -51.93 -0.42 0.46 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 48 H 0.05 1.34 6.83 -51.93 -0.35 0.99 16 49 H 0.07 1.61 3.51 -58.41 -0.21 1.41 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -27.54 349.49 -8.62 -36.17 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -7.18 Total: 19.56 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.52 Total: -3.29 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.37 Total: -59.88 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.65 Total: 14.90 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.54 -8.62 -36.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047079447.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.674 kcal (2) G-P(sol) polarization free energy of solvation -27.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds