Wall clock time and date at job start Tue Mar 31 2020 17:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46912 * 2 1 4 4 N 1.46505 * 109.46789 * 183.96960 * 3 2 1 5 5 N 1.28441 * 125.19095 * 264.81382 * 4 3 2 6 6 C 1.30865 * 110.92914 * 180.02562 * 5 4 3 7 7 C 1.39672 * 107.85731 * 359.76984 * 6 5 4 8 8 C 1.36601 * 125.18753 * 84.83892 * 4 3 2 9 9 C 1.47164 * 126.88809 * 359.93854 * 8 4 3 10 10 O 1.21622 * 119.99831 * 174.60815 * 9 8 4 11 11 N 1.34769 * 119.99703 * 354.60988 * 9 8 4 12 12 C 1.46503 * 120.00085 * 176.07084 * 11 9 8 13 13 H 1.09008 * 112.94342 * 33.88352 * 12 11 9 14 14 C 1.53948 * 113.66543 * 165.28584 * 12 11 9 15 15 C 1.53961 * 87.29291 * 89.74260 * 14 12 11 16 16 H 1.08993 * 113.66186 * 139.29886 * 15 14 12 17 17 N 1.46500 * 113.66031 * 270.26575 * 15 14 12 18 18 C 1.36933 * 119.99549 * 253.12971 * 17 15 14 19 19 H 1.08000 * 120.00525 * 6.80015 * 18 17 15 20 20 C 1.38821 * 119.99960 * 186.80160 * 18 17 15 21 21 N 1.31625 * 119.99485 * 5.91866 * 20 18 17 22 22 Si 1.86799 * 120.00134 * 185.92229 * 20 18 17 23 23 H 1.48497 * 109.47226 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47142 * 119.99852 * 22 20 18 25 25 H 1.48501 * 109.46912 * 239.99714 * 22 20 18 26 26 C 1.52910 * 113.66418 * 262.47993 * 12 11 9 27 27 C 1.52904 * 121.13639 * 36.15071 * 26 12 11 28 28 C 1.53955 * 86.78354 * 100.81267 * 27 26 12 29 29 C 1.52909 * 121.13212 * 144.70801 * 26 12 11 30 30 H 1.08999 * 109.46903 * 65.43981 * 1 2 3 31 31 H 1.09000 * 109.46933 * 185.43736 * 1 2 3 32 32 H 1.08999 * 109.47017 * 305.44067 * 1 2 3 33 33 H 1.09000 * 109.46783 * 240.00184 * 2 1 3 34 34 H 1.08994 * 109.46811 * 120.00080 * 2 1 3 35 35 H 1.08997 * 109.47013 * 63.96980 * 3 2 1 36 36 H 1.09002 * 109.46761 * 303.96787 * 3 2 1 37 37 H 1.07990 * 126.06888 * 180.02562 * 6 5 4 38 38 H 1.08005 * 127.31625 * 180.27214 * 7 6 5 39 39 H 0.97001 * 120.00452 * 356.07474 * 11 9 8 40 40 H 1.09004 * 113.58180 * 335.14175 * 14 12 11 41 41 H 1.08999 * 113.65112 * 204.34986 * 14 12 11 42 42 H 0.96999 * 120.00249 * 72.85044 * 17 15 14 43 43 H 0.97000 * 119.99228 * 184.98697 * 21 20 18 44 44 H 1.09001 * 113.65984 * 215.28316 * 27 26 12 45 45 H 1.09001 * 113.66133 * 346.34040 * 27 26 12 46 46 H 1.08995 * 113.57791 * 270.12962 * 28 27 26 47 47 H 1.08998 * 113.64946 * 139.34957 * 28 27 26 48 48 H 1.09002 * 113.66638 * 13.65441 * 29 26 12 49 49 H 1.09001 * 113.66512 * 144.71000 * 29 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5019 1.4436 -0.0956 5 7 4.3089 1.5149 0.9011 6 6 5.5535 1.4946 0.4973 7 6 5.5502 1.3958 -0.8959 8 6 4.2148 1.3694 -1.2585 9 6 3.6717 1.2741 -2.6230 10 8 4.4213 1.3132 -3.5799 11 7 2.3438 1.1434 -2.8120 12 6 1.7945 1.1351 -4.1702 13 1 2.4606 0.6669 -4.8950 14 6 0.3432 0.6274 -4.2467 15 6 -0.1012 2.0866 -4.0377 16 1 -0.9505 2.3780 -4.6554 17 7 -0.2680 2.4543 -2.6294 18 6 -1.5239 2.6199 -2.1093 19 1 -2.3914 2.3736 -2.7036 20 6 -1.6820 3.1043 -0.8180 21 7 -0.6335 3.5141 -0.1359 22 14 -3.3827 3.1746 -0.0485 23 1 -4.3852 2.6601 -1.0156 24 1 -3.4052 2.3401 1.1796 25 1 -3.7096 4.5801 0.3020 26 6 1.2527 2.4919 -4.6215 27 6 1.9359 3.7946 -4.2040 28 6 2.5710 3.8096 -5.6063 29 6 1.3818 2.9512 -6.0742 30 1 -0.3633 0.4271 -0.9347 31 1 -0.3633 -1.0230 0.0974 32 1 -0.3633 0.5959 0.8373 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.7359 1.9354 0.9234 36 1 1.6197 1.9764 -0.8523 37 1 6.4278 1.5414 1.1294 38 1 6.4077 1.3510 -1.5511 39 1 1.7515 1.0550 -2.0489 40 1 0.0687 -0.0340 -3.4249 41 1 0.0717 0.2245 -5.2225 42 1 0.5109 2.5766 -2.0645 43 1 -0.7330 3.7844 0.7904 44 1 1.2414 4.6163 -4.0295 45 1 2.6588 3.6705 -3.3976 46 1 3.5289 3.2920 -5.6567 47 1 2.6006 4.7991 -6.0623 48 1 1.6620 2.1534 -6.7621 49 1 0.5315 3.5359 -6.4254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078636721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:24 Heat of formation + Delta-G solvation = 107.090455 kcal Electronic energy + Delta-G solvation = -31537.460111 eV Core-core repulsion = 27696.513403 eV Total energy + Delta-G solvation = -3840.946708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 16.51 seconds Orbital eigenvalues (eV) -42.38752 -40.67039 -38.42146 -35.96638 -34.97268 -33.78697 -32.30728 -31.27627 -30.62066 -29.78622 -26.29122 -25.38165 -25.02500 -24.12549 -23.51031 -22.04892 -21.70475 -21.23062 -20.36638 -19.90805 -18.14720 -17.53765 -17.22404 -15.86179 -15.70118 -15.51283 -15.21726 -15.11884 -15.03300 -14.52321 -14.07950 -13.87674 -13.65667 -13.41800 -13.11191 -12.89265 -12.77392 -12.56749 -12.05274 -11.96165 -11.77600 -11.72717 -11.49794 -11.42547 -11.16720 -10.94681 -10.90317 -10.69092 -10.63745 -10.48801 -10.27513 -10.17487 -10.07037 -9.90701 -9.66721 -9.27025 -9.01692 -8.97514 -8.83290 -8.61302 -7.19244 -5.99477 -3.30568 1.48201 2.67066 2.82504 3.25884 3.29307 3.38203 3.39676 3.43991 4.38478 4.60131 4.79852 4.82050 4.99182 5.00849 5.01764 5.11514 5.13931 5.23445 5.31623 5.36705 5.43837 5.59851 5.65727 5.75685 5.83275 5.85493 5.89152 5.93888 5.98630 6.01076 6.06284 6.17682 6.18788 6.19183 6.25807 6.34526 6.42554 6.46877 6.51315 6.56844 6.68954 6.82077 6.85263 6.92098 6.94422 6.97973 7.56586 7.68239 8.19451 8.21955 8.36809 9.29458 9.82028 10.19258 11.20792 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.009280 B = 0.006646 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.376464 B = 4211.872254 C = 6204.720755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.140 4.140 3 C 0.103 3.897 4 N -0.262 5.262 5 N -0.272 5.272 6 C -0.016 4.016 7 C -0.165 4.165 8 C -0.046 4.046 9 C 0.592 3.408 10 O -0.530 6.530 11 N -0.708 5.708 12 C 0.146 3.854 13 H 0.091 0.909 14 C -0.180 4.180 15 C 0.176 3.824 16 H 0.070 0.930 17 N -0.703 5.703 18 C -0.243 4.243 19 H 0.074 0.926 20 C -0.002 4.002 21 N -0.926 5.926 22 Si 0.901 3.099 23 H -0.281 1.281 24 H -0.290 1.290 25 H -0.292 1.292 26 C -0.135 4.135 27 C -0.110 4.110 28 C -0.141 4.141 29 C -0.103 4.103 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.184 0.816 38 H 0.160 0.840 39 H 0.410 0.590 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.378 0.622 43 H 0.256 0.744 44 H 0.084 0.916 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.318 -5.534 -4.191 9.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.178 4.178 3 C -0.017 4.017 4 N -0.052 5.052 5 N -0.105 5.105 6 C -0.192 4.192 7 C -0.195 4.195 8 C -0.174 4.174 9 C 0.377 3.623 10 O -0.405 6.405 11 N -0.366 5.366 12 C 0.041 3.959 13 H 0.109 0.891 14 C -0.222 4.222 15 C 0.064 3.936 16 H 0.088 0.912 17 N -0.343 5.343 18 C -0.374 4.374 19 H 0.092 0.908 20 C -0.198 4.198 21 N -0.574 5.574 22 Si 0.732 3.268 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.219 1.219 26 C -0.138 4.138 27 C -0.147 4.147 28 C -0.178 4.178 29 C -0.142 4.142 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.201 0.799 38 H 0.178 0.822 39 H 0.254 0.746 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.214 0.786 43 H 0.066 0.934 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.781 -5.318 -3.870 8.757 hybrid contribution -0.359 0.085 0.505 0.625 sum 5.422 -5.233 -3.365 8.253 Atomic orbital electron populations 1.21777 0.92084 1.01405 1.05798 1.21992 0.98856 0.94512 1.02481 1.22678 0.71273 0.99453 1.08294 1.46247 1.07890 1.48803 1.02303 1.73152 1.01745 1.18867 1.16759 1.23547 0.94390 1.07209 0.94020 1.22094 0.94819 1.06829 0.95721 1.21805 0.93058 1.14419 0.88108 1.16997 0.82405 0.76526 0.86374 1.90771 1.58352 1.50609 1.40772 1.46385 1.07086 1.73101 1.10004 1.21537 0.95034 0.96112 0.83260 0.89072 1.24198 0.94178 1.01758 1.02022 1.21111 0.93961 0.91081 0.87473 0.91231 1.42276 1.06001 1.81823 1.04221 1.19336 0.84803 1.35681 0.97538 0.90799 1.24659 0.97019 1.00220 0.97949 1.69669 1.28354 1.49482 1.09867 0.86227 0.84096 0.77316 0.79196 1.20578 1.21713 1.21931 1.23505 0.98798 0.94467 0.97014 1.22405 0.98854 0.97377 0.96085 1.22863 0.98025 0.99506 0.97455 1.22463 0.98496 0.99055 0.94138 0.89241 0.92951 0.91570 0.92099 0.91151 0.86380 0.86013 0.79866 0.82221 0.74624 0.90902 0.89431 0.78640 0.93358 0.89784 0.92661 0.90275 0.92192 0.91741 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.91 37.16 0.37 -2.13 16 2 C -0.14 -2.18 5.51 -26.73 -0.15 -2.33 16 3 C 0.10 1.81 5.48 -4.04 -0.02 1.79 16 4 N -0.26 -4.61 3.35 -57.13 -0.19 -4.80 16 5 N -0.27 -4.64 11.90 30.59 0.36 -4.27 16 6 C -0.02 -0.23 12.03 -17.43 -0.21 -0.44 16 7 C -0.17 -2.56 10.85 -38.98 -0.42 -2.98 16 8 C -0.05 -0.82 6.96 -82.06 -0.57 -1.39 16 9 C 0.59 10.88 7.06 -12.64 -0.09 10.79 16 10 O -0.53 -10.50 16.65 5.26 0.09 -10.41 16 11 N -0.71 -12.28 3.82 -54.53 -0.21 -12.49 16 12 C 0.15 2.38 4.00 -67.48 -0.27 2.11 16 13 H 0.09 1.47 7.68 -51.92 -0.40 1.07 16 14 C -0.18 -2.78 7.60 -25.74 -0.20 -2.97 16 15 C 0.18 3.14 4.36 -67.48 -0.29 2.84 16 16 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 17 N -0.70 -14.79 4.38 -52.98 -0.23 -15.02 16 18 C -0.24 -5.70 9.33 -15.06 -0.14 -5.84 16 19 H 0.07 1.74 7.84 -52.49 -0.41 1.32 16 20 C 0.00 -0.04 5.50 -17.42 -0.10 -0.14 16 21 N -0.93 -23.06 13.09 55.49 0.73 -22.34 16 22 Si 0.90 19.97 29.56 -169.99 -5.03 14.95 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 26 C -0.13 -2.20 0.82 -154.71 -0.13 -2.33 16 27 C -0.11 -1.93 7.33 -26.28 -0.19 -2.12 16 28 C -0.14 -2.10 8.08 -25.75 -0.21 -2.30 16 29 C -0.10 -1.43 7.84 -26.28 -0.21 -1.64 16 30 H 0.09 1.66 7.10 -51.93 -0.37 1.29 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.94 7.25 -51.93 -0.38 0.56 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.12 2.19 8.14 -51.93 -0.42 1.76 16 36 H 0.12 2.38 3.82 -51.93 -0.20 2.18 16 37 H 0.18 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.16 2.14 8.06 -52.48 -0.42 1.72 16 39 H 0.41 7.15 2.25 -40.82 -0.09 7.06 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.38 8.22 4.20 -40.82 -0.17 8.04 16 43 H 0.26 6.37 8.32 -40.82 -0.34 6.03 16 44 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 45 H 0.05 1.08 7.10 -51.93 -0.37 0.71 16 46 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -26.35 386.07 -8.92 -35.28 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: -7.44 Total: 22.39 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.82 Total: -9.09 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 0.46 Total: -58.93 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -26.35 -8.92 -35.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078636721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.367 kcal (2) G-P(sol) polarization free energy of solvation -26.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.51 seconds