Wall clock time and date at job start Tue Mar 31 2020 17:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47123 * 2 1 4 4 N 1.46509 * 109.47006 * 119.99828 * 2 1 3 5 5 C 1.34259 * 125.75116 * 275.00098 * 4 2 1 6 6 C 1.38043 * 107.41561 * 179.97438 * 5 4 2 7 7 C 1.47425 * 126.41264 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00439 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99646 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99980 * 179.97438 * 9 7 6 11 11 H 1.08999 * 112.94933 * 333.10309 * 10 9 7 12 12 C 1.53954 * 113.66339 * 104.50538 * 10 9 7 13 13 C 1.53957 * 87.29472 * 89.73988 * 12 10 9 14 14 H 1.08997 * 113.66449 * 270.25900 * 13 12 10 15 15 N 1.46499 * 113.65875 * 139.29899 * 13 12 10 16 16 C 1.36936 * 119.99999 * 104.51042 * 15 13 12 17 17 H 1.07993 * 119.99932 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99890 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99709 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00166 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47506 * 90.00030 * 20 18 16 22 22 H 1.48499 * 109.47608 * 210.00361 * 20 18 16 23 23 H 1.48503 * 109.47147 * 330.00170 * 20 18 16 24 24 C 1.52909 * 113.66259 * 201.69251 * 10 9 7 25 25 C 1.52903 * 121.13918 * 36.14890 * 24 10 9 26 26 C 1.53948 * 86.78755 * 100.81872 * 25 24 10 27 27 C 1.52914 * 121.13539 * 144.70962 * 24 10 9 28 28 C 1.41290 * 107.16978 * 0.24152 * 6 5 4 29 29 N 1.30454 * 108.02290 * 359.59000 * 28 6 5 30 30 H 1.09000 * 109.47198 * 60.00486 * 1 2 3 31 31 H 1.08999 * 109.47143 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47255 * 300.00449 * 1 2 3 33 33 H 1.08999 * 109.47255 * 239.99551 * 2 1 3 34 34 H 1.08998 * 109.46995 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46947 * 299.99421 * 3 2 1 36 36 H 1.08999 * 109.47421 * 59.99653 * 3 2 1 37 37 H 1.08001 * 126.29371 * 0.02562 * 5 4 2 38 38 H 0.97001 * 120.00615 * 0.02562 * 9 7 6 39 39 H 1.08998 * 113.57647 * 335.13745 * 12 10 9 40 40 H 1.09000 * 113.58060 * 204.34211 * 12 10 9 41 41 H 0.97000 * 119.99957 * 284.49889 * 15 13 12 42 42 H 0.97001 * 119.99743 * 179.97438 * 19 18 16 43 43 H 1.09003 * 113.66288 * 215.29320 * 25 24 10 44 44 H 1.09003 * 113.66120 * 346.34558 * 25 24 10 45 45 H 1.08997 * 113.57878 * 270.13608 * 26 25 24 46 46 H 1.08998 * 113.57794 * 139.33806 * 26 25 24 47 47 H 1.09004 * 113.66265 * 13.64736 * 27 24 10 48 48 H 1.09001 * 113.66594 * 144.70702 * 27 24 10 49 49 H 1.08001 * 125.99171 * 179.73807 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1902 -0.1362 2.4069 6 6 2.6621 -1.1223 3.2497 7 6 2.9938 -0.9680 4.6779 8 8 2.8575 0.1116 5.2206 9 7 3.4470 -2.0239 5.3823 10 6 3.7771 -1.8705 6.8013 11 1 4.0683 -0.8531 7.0624 12 6 2.7251 -2.4745 7.7493 13 6 3.5172 -3.7923 7.6708 14 1 3.1985 -4.4466 6.8594 15 7 3.6277 -4.4892 8.9546 16 6 2.8658 -5.6006 9.1982 17 1 2.1831 -5.9632 8.4440 18 6 2.9709 -6.2612 10.4145 19 7 2.2382 -7.3292 10.6488 20 14 4.1521 -5.6346 11.7188 21 1 3.4528 -4.6581 12.5921 22 1 4.6348 -6.7748 12.5386 23 1 5.3081 -4.9724 11.0626 24 6 4.7377 -2.9378 7.3268 25 6 5.8656 -3.4861 6.4521 26 6 6.8069 -2.5469 7.2278 27 6 5.7911 -2.6023 8.3833 28 6 2.7737 -2.3057 2.4858 29 7 2.3836 -2.0394 1.2698 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6766 1.9563 0.8899 37 1 1.9945 0.8921 2.6727 38 1 3.5554 -2.8852 4.9496 39 1 1.7289 -2.5378 7.3114 40 1 2.7238 -2.0250 8.7423 41 1 4.2407 -4.1634 9.6321 42 1 2.3119 -7.7911 11.4986 43 1 6.0711 -4.5441 6.6155 44 1 5.7647 -3.2308 5.3972 45 1 6.9032 -1.5582 6.7791 46 1 7.7691 -2.9975 7.4711 47 1 5.6306 -1.6409 8.8712 48 1 5.9757 -3.4118 9.0896 49 1 3.1188 -3.2635 2.8461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078780429.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:35 Heat of formation + Delta-G solvation = 96.810155 kcal Electronic energy + Delta-G solvation = -28628.020577 eV Core-core repulsion = 24786.628081 eV Total energy + Delta-G solvation = -3841.392496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 5.52 seconds Orbital eigenvalues (eV) -41.67704 -40.60691 -38.57263 -36.18113 -35.12442 -34.11292 -32.31634 -30.72219 -30.67284 -29.85557 -27.90305 -25.61195 -25.17997 -24.27383 -23.68882 -22.54781 -21.76560 -20.66940 -20.22706 -19.95026 -18.47118 -17.91870 -17.28318 -16.12744 -15.88090 -15.71188 -15.33884 -15.22023 -14.85127 -14.64818 -14.53457 -14.29521 -13.85266 -13.37365 -13.19968 -13.11639 -12.78574 -12.76427 -12.70855 -12.47660 -12.16272 -12.14425 -11.96463 -11.89467 -11.78600 -11.46405 -11.24372 -11.01389 -10.91499 -10.75148 -10.23877 -10.10639 -9.90610 -9.84025 -9.77354 -9.64840 -9.40926 -8.97625 -8.83108 -8.63295 -7.24055 -5.77514 -3.12443 1.36310 1.99171 2.02259 3.29231 3.36229 3.39689 3.45256 3.48950 3.94853 4.27975 4.44329 4.47013 4.53497 4.58279 4.67226 4.85255 4.89377 4.92786 4.95862 5.00704 5.10023 5.10702 5.18567 5.19089 5.26040 5.39427 5.49841 5.51019 5.57609 5.57966 5.67646 5.81837 5.93301 5.98515 6.05252 6.09200 6.10777 6.19267 6.24078 6.32106 6.51736 6.57257 6.64153 6.65391 6.83366 7.00876 7.31312 7.70627 7.99662 8.39527 8.42680 9.20670 9.93277 10.13645 11.40842 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.019521 B = 0.002546 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.022356 B =10995.025900 C =11634.692956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 C -0.168 4.168 4 N -0.357 5.357 5 C 0.127 3.873 6 C -0.290 4.290 7 C 0.597 3.403 8 O -0.554 6.554 9 N -0.700 5.700 10 C 0.148 3.852 11 H 0.096 0.904 12 C -0.174 4.174 13 C 0.186 3.814 14 H 0.082 0.918 15 N -0.734 5.734 16 C -0.244 4.244 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.882 3.118 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.127 4.127 25 C -0.124 4.124 26 C -0.138 4.138 27 C -0.110 4.110 28 C 0.082 3.918 29 N -0.297 5.297 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.184 0.816 38 H 0.399 0.601 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.363 0.637 42 H 0.259 0.741 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.090 0.910 49 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.821 17.055 -22.128 28.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.136 5.136 5 C -0.024 4.024 6 C -0.305 4.305 7 C 0.385 3.615 8 O -0.433 6.433 9 N -0.349 5.349 10 C 0.043 3.957 11 H 0.114 0.886 12 C -0.216 4.216 13 C 0.075 3.925 14 H 0.099 0.901 15 N -0.374 5.374 16 C -0.374 4.374 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.581 5.581 20 Si 0.712 3.288 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.129 4.129 25 C -0.161 4.161 26 C -0.176 4.176 27 C -0.148 4.148 28 C -0.106 4.106 29 N -0.116 5.116 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.201 0.799 38 H 0.234 0.766 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.197 0.803 42 H 0.069 0.931 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 2.318 17.173 -23.045 28.834 hybrid contribution 0.870 0.184 1.704 1.922 sum 3.188 17.357 -21.341 27.693 Atomic orbital electron populations 1.22262 0.93168 1.03652 1.03412 1.21402 0.95165 0.92879 0.85542 1.22247 1.02544 0.93769 1.04072 1.48777 1.48841 1.07524 1.08499 1.22842 0.95456 0.99568 0.84535 1.20274 1.19712 0.94721 0.95801 1.17180 0.76184 0.83741 0.84433 1.90755 1.54551 1.26579 1.71449 1.45350 1.66687 1.12477 1.10435 1.21429 0.96076 0.98580 0.79645 0.88590 1.24249 0.98310 1.00247 0.98827 1.21378 0.91538 0.90172 0.89440 0.90056 1.42708 1.48907 1.32211 1.13564 1.19119 1.16276 1.01499 1.00549 0.89178 1.24681 0.99390 0.97402 0.97650 1.69701 1.43124 1.20709 1.24543 0.86595 0.81463 0.78043 0.82667 1.21041 1.21756 1.20283 1.23420 0.94134 0.97480 0.97884 1.22652 0.95772 0.99718 0.97963 1.22812 0.97423 0.99687 0.97664 1.22499 0.94532 1.01767 0.96011 1.24106 0.97223 0.98916 0.90351 1.77179 1.20922 0.92778 1.20758 0.90187 0.91355 0.91622 0.87554 0.91257 0.89642 0.91188 0.79863 0.76585 0.91827 0.89717 0.80275 0.93069 0.89532 0.91898 0.90706 0.91875 0.91604 0.89195 0.79310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 9.52 37.16 0.35 -0.48 16 2 C 0.15 0.88 3.91 -67.93 -0.27 0.61 16 3 C -0.17 -0.65 8.82 37.15 0.33 -0.32 16 4 N -0.36 -3.30 3.50 -54.31 -0.19 -3.49 16 5 C 0.13 1.28 10.39 -16.56 -0.17 1.11 16 6 C -0.29 -3.41 6.13 -105.07 -0.64 -4.05 16 7 C 0.60 8.39 7.81 -12.52 -0.10 8.29 16 8 O -0.55 -9.58 16.54 5.27 0.09 -9.50 16 9 N -0.70 -9.07 4.86 -54.44 -0.26 -9.34 16 10 C 0.15 2.19 4.08 -67.48 -0.28 1.92 16 11 H 0.10 1.51 7.55 -51.93 -0.39 1.12 16 12 C -0.17 -3.00 7.68 -25.74 -0.20 -3.20 16 13 C 0.19 3.43 4.27 -67.48 -0.29 3.14 16 14 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 15 N -0.73 -16.81 5.14 -52.99 -0.27 -17.08 16 16 C -0.24 -6.76 10.46 -15.06 -0.16 -6.92 16 17 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 18 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 19 N -0.93 -29.13 13.97 55.49 0.78 -28.36 16 20 Si 0.88 21.92 27.73 -169.99 -4.71 17.20 16 21 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 24 C -0.13 -1.90 0.91 -154.71 -0.14 -2.04 16 25 C -0.12 -1.62 7.59 -26.29 -0.20 -1.82 16 26 C -0.14 -1.74 8.08 -25.75 -0.21 -1.95 16 27 C -0.11 -1.62 7.16 -26.28 -0.19 -1.81 16 28 C 0.08 0.86 11.50 -16.98 -0.20 0.67 16 29 N -0.30 -3.34 12.50 30.86 0.39 -2.95 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.07 0.26 7.13 -51.93 -0.37 -0.11 16 37 H 0.18 1.50 7.23 -52.49 -0.38 1.12 16 38 H 0.40 4.38 7.22 -40.82 -0.29 4.09 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.36 8.20 4.00 -40.82 -0.16 8.04 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 43 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.06 0.72 7.50 -51.93 -0.39 0.33 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.09 1.49 6.97 -51.93 -0.36 1.13 16 49 H 0.19 1.49 7.50 -52.49 -0.39 1.10 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -34.52 396.09 -8.50 -43.02 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -7.83 Total: 11.34 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.44 Total: -6.82 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.43 Total: -61.22 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.52 -8.50 -43.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078780429.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.832 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.52 seconds