Wall clock time and date at job start Tue Mar 31 2020 18:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 119.99984 * 2 1 4 4 N 1.46504 * 109.47229 * 125.30938 * 3 2 1 5 5 C 1.36734 * 127.13813 * 272.88978 * 4 3 2 6 6 C 1.50706 * 126.34415 * 0.03043 * 5 4 3 7 7 H 1.08997 * 109.47192 * 15.25854 * 6 5 4 8 8 O 1.42907 * 109.46805 * 135.25217 * 6 5 4 9 9 C 1.53003 * 109.47305 * 255.25133 * 6 5 4 10 10 C 1.53002 * 117.49913 * 248.62419 * 9 6 5 11 11 C 1.53000 * 117.49830 * 180.02562 * 9 6 5 12 12 N 1.30293 * 107.30702 * 180.22412 * 5 4 3 13 13 N 1.28520 * 110.05090 * 359.77376 * 12 5 4 14 14 C 1.31215 * 109.86407 * 359.97438 * 13 12 5 15 15 N 1.38583 * 126.47498 * 179.97438 * 14 13 12 16 16 C 1.46902 * 110.99947 * 66.80020 * 15 14 13 17 17 C 1.50699 * 109.47115 * 160.64798 * 16 15 14 18 18 H 1.07996 * 119.99968 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99820 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00066 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99616 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47654 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46977 * 120.00360 * 21 19 17 24 24 H 1.48503 * 109.47084 * 240.00112 * 21 19 17 25 25 C 1.46899 * 110.99885 * 302.84807 * 15 14 13 26 26 C 1.53005 * 109.46827 * 293.94838 * 25 15 14 27 27 C 1.53006 * 117.51219 * 116.28788 * 26 25 15 28 28 C 1.52998 * 117.49813 * 184.91428 * 26 25 15 29 29 H 1.07995 * 120.00070 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99874 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.99941 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46939 * 5.30883 * 3 2 1 33 33 H 1.08993 * 109.47122 * 245.30873 * 3 2 1 34 34 H 0.96705 * 113.99426 * 60.00255 * 8 6 5 35 35 H 1.08993 * 115.54478 * 34.33352 * 9 6 5 36 36 H 1.09002 * 117.50020 * 0.02562 * 10 9 6 37 37 H 1.09000 * 117.49722 * 145.02030 * 10 9 6 38 38 H 1.08993 * 117.49616 * 214.97948 * 11 9 6 39 39 H 1.09003 * 117.49577 * 0.02562 * 11 9 6 40 40 H 1.09006 * 109.46640 * 280.64834 * 16 15 14 41 41 H 1.09000 * 109.47387 * 40.64602 * 16 15 14 42 42 H 0.97003 * 119.99963 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.47036 * 173.95878 * 25 15 14 44 44 H 1.08997 * 109.47289 * 53.95107 * 25 15 14 45 45 H 1.08996 * 115.55349 * 330.58922 * 26 25 15 46 46 H 1.09005 * 117.49469 * 214.96961 * 27 26 25 47 47 H 1.09000 * 117.50230 * 359.97438 * 27 26 25 48 48 H 1.09001 * 117.49696 * 359.97438 * 28 26 25 49 49 H 1.08999 * 117.50104 * 145.00308 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9990 1.3289 1.1272 5 6 2.7401 1.7363 2.4064 6 6 1.4243 2.2510 2.9308 7 1 0.6308 2.0054 2.2251 8 8 1.1440 1.6428 4.1933 9 6 1.5025 3.7694 3.1023 10 6 1.4831 4.3211 4.5293 11 6 0.2574 4.4858 3.6291 12 7 3.8429 1.6009 3.0870 13 7 4.7724 1.1348 2.3317 14 6 4.3086 0.9457 1.1190 15 7 5.0168 0.4558 0.0332 16 6 5.3922 -0.9493 0.2401 17 6 5.7198 -1.5825 -1.0876 18 1 5.6560 -0.9994 -1.9943 19 6 6.1021 -2.9060 -1.1445 20 7 6.1802 -3.6160 -0.0402 21 14 6.5074 -3.6910 -2.7903 22 1 6.3428 -2.6869 -3.8717 23 1 7.9111 -4.1758 -2.7751 24 1 5.5914 -4.8346 -3.0323 25 6 6.2003 1.2822 -0.2397 26 6 5.7566 2.6746 -0.6929 27 6 6.1298 3.8605 0.1989 28 6 6.8454 3.6531 -1.1374 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3589 2.1313 0.0951 33 1 2.6169 1.4051 -0.9336 34 1 1.8103 1.8196 4.8715 35 1 2.1125 4.2946 2.3675 36 1 1.4151 3.6024 5.3459 37 1 2.0806 5.2095 4.7335 38 1 0.0484 5.4826 3.2410 39 1 -0.6172 3.8753 3.8540 40 1 6.2644 -1.0001 0.8920 41 1 4.5617 -1.4830 0.7021 42 1 6.4495 -4.5470 -0.0802 43 1 6.7951 0.8167 -1.0257 44 1 6.7997 1.3689 0.6666 45 1 4.7992 2.7171 -1.2122 46 1 5.4179 4.6832 0.2663 47 1 6.6912 3.6488 1.1090 48 1 7.8779 3.3051 -1.1066 49 1 6.6044 4.3395 -1.9492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355856481.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:30 Heat of formation + Delta-G solvation = 113.996512 kcal Electronic energy + Delta-G solvation = -29868.049951 eV Core-core repulsion = 26027.402712 eV Total energy + Delta-G solvation = -3840.647239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.58643 -38.83389 -37.84060 -36.01214 -35.63972 -35.17251 -32.68819 -32.50477 -30.23804 -27.67738 -27.16893 -26.46605 -25.34422 -22.66811 -22.51663 -22.16406 -21.62446 -20.88850 -20.53853 -20.01128 -19.42044 -17.49503 -17.01685 -16.56684 -16.13808 -15.87428 -15.74668 -15.07012 -14.83496 -14.61975 -14.33248 -14.05664 -13.91774 -13.72260 -13.43686 -13.05171 -12.62269 -12.35337 -12.01781 -11.85718 -11.79311 -11.70170 -11.46530 -11.34586 -11.23241 -11.06679 -10.82892 -10.78697 -10.68874 -10.50876 -10.42488 -10.26911 -10.06257 -10.00146 -9.76815 -9.66495 -9.54633 -9.46224 -8.55512 -8.49092 -7.85934 -6.12259 -4.16383 1.94329 2.14986 2.80793 3.25120 3.26076 3.33205 3.37049 3.53280 4.00121 4.11961 4.28935 4.33323 4.50941 4.56506 4.67020 4.71520 4.79004 4.85718 4.98326 5.09905 5.15642 5.16525 5.23289 5.25875 5.34195 5.44207 5.46164 5.66716 5.71248 5.77027 5.78725 5.85129 5.89884 5.92904 5.99447 6.08532 6.15725 6.27969 6.36117 6.41048 6.56927 6.59734 6.61353 6.87782 7.13964 7.25521 7.42372 7.66895 7.82012 7.98651 8.34493 8.90235 9.17808 9.48217 10.97982 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.003972 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.967594 B = 7046.980730 C = 8099.580688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.164 4.164 3 C 0.141 3.859 4 N -0.458 5.458 5 C 0.127 3.873 6 C 0.239 3.761 7 H 0.113 0.887 8 O -0.543 6.543 9 C -0.185 4.185 10 C -0.167 4.167 11 C -0.168 4.168 12 N -0.279 5.279 13 N -0.319 5.319 14 C 0.390 3.610 15 N -0.467 5.467 16 C 0.210 3.790 17 C -0.513 4.513 18 H 0.068 0.932 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.900 3.100 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.103 3.897 26 C -0.144 4.144 27 C -0.182 4.182 28 C -0.176 4.176 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.386 0.614 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.012 0.988 41 H 0.028 0.972 42 H 0.263 0.737 43 H 0.099 0.901 44 H 0.046 0.954 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.971 16.123 1.776 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.183 4.183 3 C 0.018 3.982 4 N -0.151 5.151 5 C -0.141 4.141 6 C 0.176 3.824 7 H 0.130 0.870 8 O -0.349 6.349 9 C -0.204 4.204 10 C -0.204 4.204 11 C -0.205 4.205 12 N -0.120 5.120 13 N -0.162 5.162 14 C 0.034 3.966 15 N -0.193 5.193 16 C 0.087 3.913 17 C -0.552 4.552 18 H 0.086 0.914 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.728 3.272 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.024 4.024 26 C -0.163 4.163 27 C -0.219 4.219 28 C -0.213 4.213 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.142 0.858 32 H 0.107 0.893 33 H 0.131 0.869 34 H 0.237 0.763 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.030 0.970 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.117 0.883 44 H 0.064 0.936 45 H 0.119 0.881 46 H 0.101 0.899 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.781 15.760 2.282 19.231 hybrid contribution 0.366 -0.539 -1.196 1.362 sum -10.415 15.221 1.086 18.475 Atomic orbital electron populations 1.23847 0.95401 1.02151 0.99987 1.23234 0.96159 0.98830 1.00100 1.20891 0.91416 0.96549 0.89301 1.46290 1.10631 1.48255 1.09956 1.25204 0.99813 1.06375 0.82705 1.19335 0.88490 0.88570 0.85978 0.86968 1.86556 1.51358 1.76196 1.20773 1.22940 1.03174 0.94775 0.99534 1.22913 1.01146 1.03029 0.93278 1.22953 0.92413 1.01425 1.03743 1.73798 0.96428 1.15733 1.26088 1.74659 1.22817 1.18864 0.99908 1.22824 0.83466 0.98050 0.92283 1.59145 1.23606 1.06284 1.30288 1.19813 0.95940 0.77679 0.97866 1.21090 1.45865 0.95539 0.92708 0.91410 1.24978 0.95459 0.97088 0.96787 1.69983 1.47411 1.08806 1.26863 0.86409 0.77986 0.79263 0.83584 1.19539 1.20952 1.21000 1.21666 0.90260 0.89613 1.00877 1.22383 0.99453 0.91268 1.03171 1.22979 1.03756 1.00370 0.94779 1.22888 0.97822 1.02813 0.97785 0.88541 0.87739 0.85818 0.89301 0.86885 0.76342 0.87299 0.87987 0.88648 0.88763 0.88220 0.97000 0.95426 0.92722 0.88252 0.93559 0.88080 0.89858 0.88886 0.88717 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 14.32 29.02 0.42 -1.48 16 2 C -0.16 -2.25 9.85 -36.03 -0.35 -2.60 16 3 C 0.14 1.86 6.20 -5.19 -0.03 1.82 16 4 N -0.46 -7.59 2.79 -115.37 -0.32 -7.92 16 5 C 0.13 2.05 6.91 -154.02 -1.06 0.98 16 6 C 0.24 2.91 3.68 -27.88 -0.10 2.81 16 7 H 0.11 1.24 7.37 -51.93 -0.38 0.86 16 8 O -0.54 -6.93 12.48 -35.23 -0.44 -7.37 16 9 C -0.18 -1.87 5.70 -90.62 -0.52 -2.38 16 10 C -0.17 -1.49 9.73 -26.75 -0.26 -1.75 16 11 C -0.17 -1.36 10.19 -26.75 -0.27 -1.64 16 12 N -0.28 -5.37 12.10 32.99 0.40 -4.97 16 13 N -0.32 -6.90 11.97 30.31 0.36 -6.54 16 14 C 0.39 7.82 5.66 -318.88 -1.81 6.02 16 15 N -0.47 -9.79 4.46 -175.87 -0.78 -10.58 16 16 C 0.21 5.40 4.70 -4.98 -0.02 5.38 16 17 C -0.51 -13.68 8.55 -34.44 -0.29 -13.98 16 18 H 0.07 1.76 7.76 -52.49 -0.41 1.35 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 21 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.10 1.96 5.03 -3.82 -0.02 1.94 16 26 C -0.14 -2.23 5.27 -90.62 -0.48 -2.71 16 27 C -0.18 -2.56 10.18 -26.73 -0.27 -2.84 16 28 C -0.18 -2.28 10.25 -26.73 -0.27 -2.55 16 29 H 0.10 0.81 7.84 -52.49 -0.41 0.40 16 30 H 0.10 1.07 8.06 -52.49 -0.42 0.64 16 31 H 0.12 2.10 8.06 -52.48 -0.42 1.67 16 32 H 0.09 0.87 7.31 -51.93 -0.38 0.49 16 33 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.39 4.39 7.49 45.56 0.34 4.73 16 35 H 0.11 1.17 8.11 -51.93 -0.42 0.74 16 36 H 0.10 0.87 6.38 -51.93 -0.33 0.54 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.01 0.34 8.00 -51.93 -0.42 -0.07 16 41 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.10 1.96 7.38 -51.93 -0.38 1.58 16 44 H 0.05 0.94 7.64 -51.93 -0.40 0.54 16 45 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 48 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 410.42 15.07 6.18 6.18 Total: -1.00 -31.37 410.42 -11.71 -43.08 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.38 Total: 8.97 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -5.45 Total: -11.44 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.39 Total: -55.29 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.44 Total: -7.37 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.37 -11.71 -43.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355856481.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.081 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds