Wall clock time and date at job start Tue Mar 31 2020 18:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00415 * 2 1 4 4 N 1.46495 * 109.47252 * 124.99887 * 3 2 1 5 5 C 1.36744 * 127.13283 * 85.45751 * 4 3 2 6 6 C 1.50691 * 126.35313 * 359.97438 * 5 4 3 7 7 H 1.09004 * 109.46780 * 344.99676 * 6 5 4 8 8 O 1.42901 * 109.47135 * 225.00320 * 6 5 4 9 9 C 1.52999 * 109.47491 * 104.99865 * 6 5 4 10 10 C 1.52997 * 117.49757 * 248.62276 * 9 6 5 11 11 C 1.53000 * 60.00139 * 252.51037 * 10 9 6 12 12 N 1.30298 * 107.29803 * 180.24133 * 5 4 3 13 13 N 1.28523 * 110.05837 * 359.56074 * 12 5 4 14 14 C 1.31221 * 109.85862 * 0.44966 * 13 12 5 15 15 N 1.38577 * 126.47417 * 179.69539 * 14 13 12 16 16 C 1.46905 * 111.00334 * 106.98171 * 15 14 13 17 17 C 1.50704 * 109.46979 * 298.54888 * 16 15 14 18 18 H 1.08005 * 119.99550 * 5.03267 * 17 16 15 19 19 C 1.37868 * 119.99919 * 185.03768 * 17 16 15 20 20 N 1.31512 * 120.00164 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00157 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47057 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47161 * 119.99711 * 21 19 17 24 24 H 1.48501 * 109.47187 * 240.00190 * 21 19 17 25 25 C 1.46906 * 111.00240 * 343.02884 * 15 14 13 26 26 C 1.52995 * 109.47093 * 195.49885 * 25 15 14 27 27 C 1.52998 * 117.49655 * 243.40741 * 26 25 15 28 28 C 1.53006 * 117.49575 * 174.74984 * 26 25 15 29 29 H 1.07999 * 120.00187 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.99677 * 0.02562 * 1 2 3 31 31 H 1.08010 * 119.99897 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46866 * 4.99560 * 3 2 1 33 33 H 1.08999 * 109.47130 * 245.00051 * 3 2 1 34 34 H 0.96702 * 113.99804 * 299.98966 * 8 6 5 35 35 H 1.08996 * 115.54602 * 34.32976 * 9 6 5 36 36 H 1.09000 * 117.49983 * 0.02562 * 10 9 6 37 37 H 1.09003 * 117.50012 * 145.01680 * 10 9 6 38 38 H 1.09003 * 117.49633 * 252.51238 * 11 10 9 39 39 H 1.08998 * 117.51663 * 107.48216 * 11 10 9 40 40 H 1.09001 * 109.46954 * 58.54418 * 16 15 14 41 41 H 1.08998 * 109.47522 * 178.54634 * 16 15 14 42 42 H 0.97007 * 120.00162 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.46627 * 315.50041 * 25 15 14 44 44 H 1.09003 * 109.46987 * 75.49498 * 25 15 14 45 45 H 1.08995 * 115.55395 * 29.08634 * 26 25 15 46 46 H 1.09000 * 117.50198 * 0.02562 * 27 26 25 47 47 H 1.09009 * 117.49812 * 145.02173 * 27 26 25 48 48 H 1.08994 * 117.49955 * 214.97509 * 28 26 25 49 49 H 1.09003 * 117.49775 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.2625 0.8230 1.1692 6 6 4.9769 0.1204 0.0437 7 1 4.2560 -0.1643 -0.7227 8 8 5.6238 -1.0501 0.5473 9 6 6.0216 1.0596 -0.5624 10 6 5.7712 1.5730 -1.9817 11 6 6.8588 0.5274 -1.7273 12 7 4.7369 1.0532 2.3606 13 7 3.8646 1.6762 3.0697 14 6 2.7742 1.8700 2.3659 15 7 1.6178 2.5014 2.7954 16 6 1.4849 3.8302 2.1832 17 6 2.6514 4.6914 2.5938 18 1 3.4560 4.2683 3.1770 19 6 2.6915 6.0192 2.2249 20 7 1.7120 6.5341 1.5144 21 14 4.1372 7.0869 2.7344 22 1 5.0986 6.2750 3.5230 23 1 4.8128 7.6163 1.5227 24 1 3.6491 8.2183 3.5633 25 6 1.5803 2.5910 4.2612 26 6 0.1585 2.9274 4.7154 27 6 -0.0557 4.2586 5.4385 28 6 -0.1170 2.9440 6.2203 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 6.2802 -0.8718 1.2346 35 1 6.5086 1.7365 0.1395 36 1 4.8619 1.2420 -2.4835 37 1 6.0932 2.5881 -2.2139 38 1 7.8965 0.8547 -1.7920 39 1 6.6656 -0.4919 -2.0615 40 1 1.4712 3.7304 1.0979 41 1 0.5563 4.2929 2.5173 42 1 1.7404 7.4683 1.2545 43 1 1.8829 1.6363 4.6914 44 1 2.2628 3.3726 4.5950 45 1 -0.6395 2.5756 4.0615 46 1 0.8161 4.8949 5.5903 47 1 -0.9949 4.7826 5.2605 48 1 -1.0964 2.6037 6.5564 49 1 0.7147 2.7157 6.8868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355856482.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:34 Heat of formation + Delta-G solvation = 112.234470 kcal Electronic energy + Delta-G solvation = -30056.433976 eV Core-core repulsion = 26215.710329 eV Total energy + Delta-G solvation = -3840.723647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.39829 -38.46198 -37.76556 -35.97753 -35.54196 -35.33768 -32.61321 -32.44167 -29.94085 -27.64043 -26.85354 -26.27316 -25.32341 -22.71741 -22.45075 -21.87003 -21.71970 -20.58894 -20.47089 -19.82577 -19.36381 -17.27443 -16.69867 -16.61832 -15.89935 -15.77366 -15.68068 -15.08462 -14.68407 -14.59477 -14.36521 -13.98114 -13.77718 -13.47627 -13.17524 -12.97194 -12.78548 -12.35155 -11.88367 -11.68662 -11.58307 -11.48372 -11.31198 -11.22986 -11.03624 -11.02169 -10.77706 -10.66168 -10.62535 -10.33398 -10.22915 -10.19302 -10.07569 -9.85468 -9.74897 -9.54701 -9.51698 -9.29320 -8.78184 -8.56295 -7.47405 -6.17997 -4.24389 2.02425 2.34036 2.95025 3.21059 3.29980 3.38351 3.45405 3.66943 4.25403 4.34210 4.36610 4.44587 4.60896 4.68838 4.78136 4.83394 4.95044 5.01841 5.14958 5.17589 5.20848 5.32500 5.42441 5.44239 5.53977 5.56484 5.64894 5.79515 5.80087 5.81725 5.97363 6.01860 6.03610 6.10301 6.18258 6.34219 6.39296 6.45503 6.50537 6.54772 6.65305 6.71196 6.89383 6.94895 7.22479 7.25887 7.54385 7.56740 7.78417 8.01592 8.12662 8.84696 9.39314 9.43671 10.88675 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.009489 B = 0.004935 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.187680 B = 5672.232111 C = 7037.130411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.179 4.179 3 C 0.138 3.862 4 N -0.464 5.464 5 C 0.120 3.880 6 C 0.242 3.758 7 H 0.106 0.894 8 O -0.545 6.545 9 C -0.187 4.187 10 C -0.172 4.172 11 C -0.162 4.162 12 N -0.280 5.280 13 N -0.332 5.332 14 C 0.419 3.581 15 N -0.465 5.465 16 C 0.193 3.807 17 C -0.549 4.549 18 H 0.069 0.931 19 C 0.071 3.929 20 N -0.890 5.890 21 Si 0.887 3.113 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.281 1.281 25 C 0.108 3.892 26 C -0.134 4.134 27 C -0.168 4.168 28 C -0.187 4.187 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.387 0.613 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.025 0.975 41 H 0.057 0.943 42 H 0.263 0.737 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.111 -11.386 -4.970 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.198 4.198 3 C 0.015 3.985 4 N -0.159 5.159 5 C -0.148 4.148 6 C 0.180 3.820 7 H 0.124 0.876 8 O -0.349 6.349 9 C -0.206 4.206 10 C -0.209 4.209 11 C -0.199 4.199 12 N -0.121 5.121 13 N -0.177 5.177 14 C 0.062 3.938 15 N -0.189 5.189 16 C 0.070 3.930 17 C -0.587 4.587 18 H 0.087 0.913 19 C -0.132 4.132 20 N -0.528 5.528 21 Si 0.714 3.286 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.207 1.207 25 C -0.019 4.019 26 C -0.152 4.152 27 C -0.205 4.205 28 C -0.224 4.224 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.110 0.890 34 H 0.236 0.764 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.043 0.957 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.122 0.878 46 H 0.116 0.884 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.019 -11.758 -4.469 12.578 hybrid contribution 0.642 1.696 -0.299 1.838 sum 0.623 -10.062 -4.768 11.151 Atomic orbital electron populations 1.23932 0.95563 1.02423 0.97352 1.23056 0.96455 0.97725 1.02604 1.20944 0.92234 0.97830 0.87453 1.45900 1.13074 1.44585 1.12299 1.25031 0.84911 1.06046 0.98817 1.19311 0.90786 0.83145 0.88798 0.87589 1.86509 1.58474 1.30380 1.59567 1.22988 1.02228 1.03092 0.92313 1.22970 1.00782 0.99620 0.97563 1.22867 0.96558 0.99160 1.01304 1.73685 1.23974 1.13857 1.00548 1.74630 0.97506 1.19486 1.26076 1.22573 0.92260 0.96381 0.82538 1.59345 1.26217 1.23518 1.09810 1.19980 0.98700 0.80208 0.94148 1.21779 1.06375 0.95407 1.35188 0.91324 1.24861 0.95943 0.97761 0.94644 1.69933 1.31627 1.14074 1.37175 0.86591 0.82914 0.80477 0.78569 1.19468 1.21007 1.20730 1.21433 0.94487 1.01508 0.84485 1.22109 0.98267 1.01331 0.93533 1.22978 1.03176 0.90692 1.03703 1.22945 1.02126 1.02904 0.94455 0.88051 0.87749 0.87096 0.87249 0.88971 0.76358 0.86815 0.88671 0.88392 0.88617 0.88292 0.95701 0.92547 0.92767 0.91562 0.91192 0.87832 0.88405 0.89436 0.89431 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 14.32 29.02 0.42 -1.33 16 2 C -0.18 -2.25 9.85 -36.02 -0.35 -2.61 16 3 C 0.14 2.04 6.11 -5.20 -0.03 2.00 16 4 N -0.46 -8.49 2.79 -115.37 -0.32 -8.81 16 5 C 0.12 2.14 6.91 -154.01 -1.06 1.07 16 6 C 0.24 3.30 3.53 -27.89 -0.10 3.20 16 7 H 0.11 1.29 7.16 -51.93 -0.37 0.92 16 8 O -0.54 -7.28 13.24 -35.23 -0.47 -7.74 16 9 C -0.19 -2.37 5.35 -90.62 -0.48 -2.86 16 10 C -0.17 -1.89 10.18 -26.73 -0.27 -2.16 16 11 C -0.16 -1.63 10.16 -26.73 -0.27 -1.90 16 12 N -0.28 -5.82 12.09 32.99 0.40 -5.42 16 13 N -0.33 -7.60 11.00 30.31 0.33 -7.27 16 14 C 0.42 8.94 5.83 -318.88 -1.86 7.08 16 15 N -0.47 -9.71 4.68 -175.87 -0.82 -10.53 16 16 C 0.19 4.59 4.81 -4.97 -0.02 4.56 16 17 C -0.55 -14.60 7.53 -34.44 -0.26 -14.86 16 18 H 0.07 1.95 6.43 -52.48 -0.34 1.61 16 19 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 20 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 21 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.11 2.15 4.57 -3.82 -0.02 2.13 16 26 C -0.13 -2.29 5.05 -90.62 -0.46 -2.75 16 27 C -0.17 -2.80 10.18 -26.69 -0.27 -3.07 16 28 C -0.19 -2.70 10.26 -26.69 -0.27 -2.97 16 29 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.10 1.19 7.84 -52.49 -0.41 0.77 16 31 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 32 H 0.11 1.76 5.81 -51.93 -0.30 1.46 16 33 H 0.09 1.15 7.74 -51.93 -0.40 0.75 16 34 H 0.39 4.59 8.97 45.56 0.41 5.00 16 35 H 0.11 1.67 8.11 -51.93 -0.42 1.25 16 36 H 0.09 0.93 8.05 -51.93 -0.42 0.51 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.03 0.62 6.27 -51.93 -0.33 0.29 16 41 H 0.06 1.41 7.42 -51.93 -0.39 1.03 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 43 H 0.07 1.30 7.81 -51.93 -0.41 0.90 16 44 H 0.07 1.57 6.19 -51.93 -0.32 1.25 16 45 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 46 H 0.10 1.79 8.03 -51.93 -0.42 1.37 16 47 H 0.09 1.37 8.14 -51.92 -0.42 0.94 16 48 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 405.28 15.07 6.11 6.11 Total: -1.00 -30.76 405.28 -11.53 -42.29 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -7.05 Total: 11.50 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -5.42 Total: -12.62 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.32 Total: -56.06 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.47 Total: -7.74 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.76 -11.53 -42.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355856482.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.522 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds