Wall clock time and date at job start Tue Mar 31 2020 19:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47423 * 2 1 4 4 N 1.46498 * 109.47360 * 179.97438 * 3 2 1 5 5 C 1.36936 * 119.99823 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00526 * 0.02562 * 5 4 3 7 7 C 1.38821 * 119.99562 * 180.02562 * 5 4 3 8 8 N 1.31618 * 120.00304 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99683 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47535 * 89.99825 * 9 7 5 11 11 H 1.48500 * 109.47410 * 209.99939 * 9 7 5 12 12 H 1.48503 * 109.47421 * 330.00061 * 9 7 5 13 13 N 1.46500 * 109.47429 * 120.00499 * 2 1 3 14 14 C 1.34780 * 119.99819 * 304.29202 * 13 2 1 15 15 O 1.21577 * 120.00021 * 354.98891 * 14 13 2 16 16 C 1.47703 * 120.00393 * 174.98530 * 14 13 2 17 17 C 1.41641 * 126.50076 * 180.02562 * 16 14 13 18 18 C 1.34705 * 105.33664 * 180.02562 * 17 16 14 19 19 N 1.35501 * 107.71328 * 0.02571 * 18 17 16 20 20 N 1.28428 * 109.72234 * 359.96207 * 19 18 17 21 21 C 1.46996 * 123.90436 * 179.91544 * 19 18 17 22 22 C 1.53142 * 108.89221 * 342.35570 * 21 19 18 23 23 C 1.53158 * 109.60789 * 51.09489 * 22 21 19 24 24 C 1.50796 * 127.53514 * 180.02562 * 18 17 16 25 25 C 1.52999 * 109.47089 * 240.00151 * 2 1 3 26 26 C 1.53002 * 117.49750 * 12.70421 * 25 2 1 27 27 C 1.53003 * 60.00078 * 252.50963 * 26 25 2 28 28 H 1.09004 * 109.47082 * 299.99573 * 1 2 3 29 29 H 1.08996 * 109.47377 * 59.99399 * 1 2 3 30 30 H 1.08998 * 109.47654 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47335 * 300.00627 * 3 2 1 32 32 H 1.09004 * 109.46643 * 60.00158 * 3 2 1 33 33 H 0.96998 * 119.99919 * 0.02562 * 4 3 2 34 34 H 0.96999 * 119.99676 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00752 * 124.29146 * 13 2 1 36 36 H 1.07997 * 127.33100 * 0.02562 * 17 16 14 37 37 H 1.08996 * 109.56850 * 102.17333 * 21 19 18 38 38 H 1.09004 * 109.57274 * 222.41247 * 21 19 18 39 39 H 1.08999 * 109.44523 * 291.05979 * 22 21 19 40 40 H 1.08997 * 109.45159 * 171.13601 * 22 21 19 41 41 H 1.08997 * 109.54183 * 170.54643 * 23 22 21 42 42 H 1.08999 * 109.53821 * 50.28586 * 23 22 21 43 43 H 1.09004 * 109.71831 * 44.77479 * 24 18 17 44 44 H 1.08998 * 109.72148 * 284.12619 * 24 18 17 45 45 H 1.09002 * 115.55393 * 158.41085 * 25 2 1 46 46 H 1.08998 * 117.50109 * 359.97438 * 26 25 2 47 47 H 1.09001 * 117.50134 * 145.02369 * 26 25 2 48 48 H 1.08996 * 117.50217 * 252.51438 * 27 26 25 49 49 H 1.09000 * 117.50015 * 107.48281 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1896 2.6284 0.0002 6 1 3.6497 3.5637 -0.0002 7 6 5.5779 2.6283 0.0002 8 7 6.2359 1.4885 0.0002 9 14 6.5118 4.2460 0.0004 10 1 6.7593 4.6747 1.4005 11 1 7.8094 4.0685 -0.6996 12 1 5.7093 5.2810 -0.6996 13 7 2.0183 -0.6907 1.1961 14 6 1.6230 -0.2829 2.4184 15 8 0.9349 0.7127 2.5340 16 6 2.0255 -1.0456 3.6175 17 6 1.6899 -0.7437 4.9600 18 6 2.2741 -1.7069 5.6986 19 7 2.9242 -2.5397 4.8502 20 7 2.7662 -2.1365 3.6411 21 6 3.6876 -3.7189 5.2831 22 6 3.9906 -3.5917 6.7788 23 6 2.6974 -3.2878 7.5412 24 6 2.2361 -1.8653 7.1977 25 6 2.0399 -0.7212 -1.2493 26 6 1.0272 -1.0164 -2.3575 27 6 1.5584 -2.1545 -1.4836 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.9900 0.6024 0.0006 34 1 7.2059 1.4885 0.0006 35 1 2.6262 -1.4415 1.1085 36 1 1.0926 0.0828 5.3158 37 1 3.1002 -4.6197 5.1050 38 1 4.6212 -3.7753 4.7232 39 1 4.7037 -2.7828 6.9371 40 1 4.4158 -4.5266 7.1438 41 1 2.8798 -3.3631 8.6131 42 1 1.9265 -4.0013 7.2502 43 1 1.2189 -1.7115 7.5581 44 1 2.9047 -1.1399 7.6613 45 1 3.0588 -0.4771 -1.5501 46 1 -0.0025 -0.6971 -2.1964 47 1 1.3796 -0.9664 -3.3877 48 1 2.2603 -2.8531 -1.9389 49 1 0.8783 -2.5835 -0.7478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481932773.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:00 Heat of formation + Delta-G solvation = 79.290975 kcal Electronic energy + Delta-G solvation = -29444.873092 eV Core-core repulsion = 25602.720907 eV Total energy + Delta-G solvation = -3842.152184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 17.65 seconds Orbital eigenvalues (eV) -42.68550 -39.79765 -37.61476 -36.70961 -34.53747 -33.31999 -33.12109 -31.34735 -30.25940 -29.31153 -28.71257 -25.82198 -24.86421 -23.77549 -22.89661 -22.26409 -22.01820 -21.93910 -20.15887 -18.99877 -18.56855 -17.06966 -17.02187 -16.73701 -16.26528 -15.50379 -15.12218 -14.81765 -14.53643 -14.43962 -14.39923 -14.17119 -13.85459 -13.59363 -13.45164 -13.08849 -12.90375 -12.57113 -12.27157 -12.10129 -11.95936 -11.79691 -11.52246 -11.43452 -11.35622 -11.25110 -10.95926 -10.73841 -10.72247 -10.66151 -10.59679 -10.08770 -10.00144 -9.70832 -9.56018 -9.34435 -8.92524 -8.82741 -8.68721 -8.38754 -6.72711 -5.63344 -2.88919 1.84122 2.28012 2.43782 3.50176 3.52343 3.56743 3.58588 3.89935 4.06499 4.21613 4.27696 4.34166 4.49504 4.71463 4.82121 4.86270 4.92462 5.02281 5.15094 5.20979 5.26819 5.30285 5.35613 5.40908 5.47373 5.49905 5.57055 5.63331 5.72218 5.76249 5.76739 5.84347 5.92329 6.02636 6.07971 6.17478 6.33975 6.36728 6.39305 6.56558 6.56836 6.70723 6.81077 6.84853 7.05122 7.26608 7.84096 7.95986 8.22482 8.56193 8.77827 9.67357 10.27189 10.63002 11.59981 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.009236 B = 0.003918 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.975748 B = 7145.366005 C = 8861.303694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.202 3.798 3 C 0.144 3.856 4 N -0.726 5.726 5 C -0.227 4.227 6 H 0.069 0.931 7 C -0.017 4.017 8 N -0.936 5.936 9 Si 0.904 3.096 10 H -0.292 1.292 11 H -0.293 1.293 12 H -0.283 1.283 13 N -0.695 5.695 14 C 0.611 3.389 15 O -0.531 6.531 16 C -0.005 4.005 17 C -0.176 4.176 18 C 0.006 3.994 19 N -0.284 5.284 20 N -0.257 5.257 21 C 0.122 3.878 22 C -0.137 4.137 23 C -0.126 4.126 24 C -0.051 4.051 25 C -0.149 4.149 26 C -0.172 4.172 27 C -0.182 4.182 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.024 0.976 32 H 0.045 0.955 33 H 0.382 0.618 34 H 0.252 0.748 35 H 0.403 0.597 36 H 0.160 0.840 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.122 0.878 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.796 -15.727 11.991 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.116 3.884 3 C 0.016 3.984 4 N -0.370 5.370 5 C -0.359 4.359 6 H 0.087 0.913 7 C -0.213 4.213 8 N -0.586 5.586 9 Si 0.736 3.264 10 H -0.220 1.220 11 H -0.220 1.220 12 H -0.208 1.208 13 N -0.345 5.345 14 C 0.395 3.605 15 O -0.406 6.406 16 C -0.166 4.166 17 C -0.204 4.204 18 C -0.117 4.117 19 N -0.074 5.074 20 N -0.092 5.092 21 C 0.002 3.998 22 C -0.175 4.175 23 C -0.164 4.164 24 C -0.089 4.089 25 C -0.167 4.167 26 C -0.210 4.210 27 C -0.219 4.219 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.216 0.784 34 H 0.062 0.938 35 H 0.238 0.762 36 H 0.178 0.822 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.140 0.860 46 H 0.117 0.883 47 H 0.111 0.889 48 H 0.110 0.890 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.626 -15.689 11.365 21.633 hybrid contribution 0.919 0.759 0.398 1.257 sum -8.707 -14.930 11.764 20.907 Atomic orbital electron populations 1.22288 0.94709 1.01633 1.03633 1.20042 0.93098 0.93147 0.82067 1.21074 0.86437 0.91715 0.99186 1.42246 0.99249 1.06175 1.89314 1.19257 0.89025 0.86261 1.41312 0.91341 1.24670 0.96298 0.96598 1.03690 1.69661 1.06483 1.23738 1.58749 0.86216 0.79404 0.83392 0.77409 1.21971 1.21964 1.20829 1.45743 1.48786 1.35345 1.04650 1.16718 0.79541 0.82935 0.81308 1.90710 1.39374 1.24658 1.85815 1.22080 1.03182 0.96020 0.95345 1.21287 1.06267 1.01613 0.91217 1.21200 1.01312 0.94680 0.94519 1.45655 1.37357 1.21436 1.02953 1.73438 1.18050 1.14050 1.03652 1.22086 0.96750 0.84743 0.96205 1.21936 0.98992 1.04135 0.92443 1.21684 0.97072 0.96717 1.00888 1.20319 1.03290 0.97566 0.87742 1.22554 1.00696 0.97020 0.96470 1.23046 0.99266 1.02857 0.95813 1.22926 1.03988 0.91585 1.03413 0.90096 0.91526 0.92989 0.95850 0.93681 0.78395 0.93843 0.76176 0.82247 0.89191 0.88098 0.90264 0.88849 0.90205 0.91174 0.89203 0.89558 0.85998 0.88278 0.88940 0.89010 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 6.97 37.15 0.26 -2.35 16 2 C 0.20 3.67 0.54 -131.82 -0.07 3.60 16 3 C 0.14 3.27 5.03 -4.04 -0.02 3.25 16 4 N -0.73 -19.43 5.04 -59.91 -0.30 -19.73 16 5 C -0.23 -6.74 9.99 -15.06 -0.15 -6.89 16 6 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 7 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 8 N -0.94 -29.26 13.06 55.49 0.72 -28.54 16 9 Si 0.90 23.55 29.55 -169.99 -5.02 18.53 16 10 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 11 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 12 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 13 N -0.70 -12.84 4.72 -48.58 -0.23 -13.07 16 14 C 0.61 12.11 7.23 -12.39 -0.09 12.02 16 15 O -0.53 -11.63 13.16 5.30 0.07 -11.56 16 16 C -0.01 -0.10 7.13 -82.68 -0.59 -0.69 16 17 C -0.18 -2.74 10.75 -39.54 -0.43 -3.16 16 18 C 0.01 0.08 6.57 -82.18 -0.54 -0.46 16 19 N -0.28 -3.74 3.74 -56.71 -0.21 -3.95 16 20 N -0.26 -4.24 11.73 33.46 0.39 -3.84 16 21 C 0.12 1.03 7.17 -3.70 -0.03 1.00 16 22 C -0.14 -0.81 5.91 -26.58 -0.16 -0.97 16 23 C -0.13 -0.72 5.98 -26.42 -0.16 -0.88 16 24 C -0.05 -0.41 6.28 -27.61 -0.17 -0.58 16 25 C -0.15 -2.46 4.84 -90.62 -0.44 -2.90 16 26 C -0.17 -2.33 9.63 -26.73 -0.26 -2.59 16 27 C -0.18 -2.43 9.82 -26.73 -0.26 -2.69 16 28 H 0.08 1.43 6.03 -51.93 -0.31 1.12 16 29 H 0.07 0.96 6.78 -51.93 -0.35 0.61 16 30 H 0.05 0.74 6.99 -51.93 -0.36 0.37 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 1.13 6.32 -51.93 -0.33 0.80 16 33 H 0.38 10.57 6.62 -40.82 -0.27 10.30 16 34 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.40 7.18 8.21 -40.82 -0.34 6.84 16 36 H 0.16 2.31 8.06 -52.49 -0.42 1.88 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.12 2.39 7.09 -51.93 -0.37 2.02 16 46 H 0.10 1.24 5.88 -51.93 -0.31 0.93 16 47 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 48 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.09 1.17 7.35 -51.93 -0.38 0.79 16 LS Contribution 386.65 15.07 5.83 5.83 Total: -1.00 -35.84 386.65 -9.58 -45.42 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -7.63 Total: 15.82 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -3.20 Total: -4.91 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: 0.37 Total: -69.13 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.02 Total: 18.53 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.84 -9.58 -45.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481932773.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.714 kcal (2) G-P(sol) polarization free energy of solvation -35.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.65 seconds