Wall clock time and date at job start Tue Mar 31 2020 19:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47423 * 2 1 4 4 N 1.46498 * 109.47360 * 179.97438 * 3 2 1 5 5 C 1.36936 * 119.99823 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00526 * 0.02562 * 5 4 3 7 7 C 1.38821 * 119.99562 * 180.02562 * 5 4 3 8 8 N 1.31618 * 120.00304 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99683 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47535 * 89.99825 * 9 7 5 11 11 H 1.48500 * 109.47410 * 209.99939 * 9 7 5 12 12 H 1.48503 * 109.47421 * 330.00061 * 9 7 5 13 13 N 1.46500 * 109.47429 * 120.00499 * 2 1 3 14 14 C 1.34780 * 119.99819 * 304.29202 * 13 2 1 15 15 O 1.21577 * 120.00021 * 354.98891 * 14 13 2 16 16 C 1.47703 * 120.00393 * 174.98530 * 14 13 2 17 17 C 1.41641 * 126.50076 * 180.02562 * 16 14 13 18 18 C 1.34705 * 105.33664 * 180.02562 * 17 16 14 19 19 N 1.35501 * 107.71328 * 0.02571 * 18 17 16 20 20 N 1.28428 * 109.72234 * 359.96207 * 19 18 17 21 21 C 1.46996 * 123.90436 * 179.91544 * 19 18 17 22 22 C 1.53142 * 108.89221 * 342.35570 * 21 19 18 23 23 C 1.53158 * 109.60789 * 51.09489 * 22 21 19 24 24 C 1.50796 * 127.53514 * 180.02562 * 18 17 16 25 25 C 1.52999 * 109.47089 * 240.00151 * 2 1 3 26 26 C 1.53002 * 117.49750 * 12.70421 * 25 2 1 27 27 C 1.53003 * 60.00078 * 252.50963 * 26 25 2 28 28 H 1.09004 * 109.47082 * 299.99573 * 1 2 3 29 29 H 1.08996 * 109.47377 * 59.99399 * 1 2 3 30 30 H 1.08998 * 109.47654 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47335 * 300.00627 * 3 2 1 32 32 H 1.09004 * 109.46643 * 60.00158 * 3 2 1 33 33 H 0.96998 * 119.99919 * 0.02562 * 4 3 2 34 34 H 0.96999 * 119.99676 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00752 * 124.29146 * 13 2 1 36 36 H 1.07997 * 127.33100 * 0.02562 * 17 16 14 37 37 H 1.08996 * 109.56850 * 102.17333 * 21 19 18 38 38 H 1.09004 * 109.57274 * 222.41247 * 21 19 18 39 39 H 1.08999 * 109.44523 * 291.05979 * 22 21 19 40 40 H 1.08997 * 109.45159 * 171.13601 * 22 21 19 41 41 H 1.08997 * 109.54183 * 170.54643 * 23 22 21 42 42 H 1.08999 * 109.53821 * 50.28586 * 23 22 21 43 43 H 1.09004 * 109.71831 * 44.77479 * 24 18 17 44 44 H 1.08998 * 109.72148 * 284.12619 * 24 18 17 45 45 H 1.09002 * 115.55393 * 158.41085 * 25 2 1 46 46 H 1.08998 * 117.50109 * 359.97438 * 26 25 2 47 47 H 1.09001 * 117.50134 * 145.02369 * 26 25 2 48 48 H 1.08996 * 117.50217 * 252.51438 * 27 26 25 49 49 H 1.09000 * 117.50015 * 107.48281 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1896 2.6284 0.0002 6 1 3.6497 3.5637 -0.0002 7 6 5.5779 2.6283 0.0002 8 7 6.2359 1.4885 0.0002 9 14 6.5118 4.2460 0.0004 10 1 6.7593 4.6747 1.4005 11 1 7.8094 4.0685 -0.6996 12 1 5.7093 5.2810 -0.6996 13 7 2.0183 -0.6907 1.1961 14 6 1.6230 -0.2829 2.4184 15 8 0.9349 0.7127 2.5340 16 6 2.0255 -1.0456 3.6175 17 6 1.6899 -0.7437 4.9600 18 6 2.2741 -1.7069 5.6986 19 7 2.9242 -2.5397 4.8502 20 7 2.7662 -2.1365 3.6411 21 6 3.6876 -3.7189 5.2831 22 6 3.9906 -3.5917 6.7788 23 6 2.6974 -3.2878 7.5412 24 6 2.2361 -1.8653 7.1977 25 6 2.0399 -0.7212 -1.2493 26 6 1.0272 -1.0164 -2.3575 27 6 1.5584 -2.1545 -1.4836 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.9900 0.6024 0.0006 34 1 7.2059 1.4885 0.0006 35 1 2.6262 -1.4415 1.1085 36 1 1.0926 0.0828 5.3158 37 1 3.1002 -4.6197 5.1050 38 1 4.6212 -3.7753 4.7232 39 1 4.7037 -2.7828 6.9371 40 1 4.4158 -4.5266 7.1438 41 1 2.8798 -3.3631 8.6131 42 1 1.9265 -4.0013 7.2502 43 1 1.2189 -1.7115 7.5581 44 1 2.9047 -1.1399 7.6613 45 1 3.0588 -0.4771 -1.5501 46 1 -0.0025 -0.6971 -2.1964 47 1 1.3796 -0.9664 -3.3877 48 1 2.2603 -2.8531 -1.9389 49 1 0.8783 -2.5835 -0.7478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481932773.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:51 Heat of formation + Delta-G solvation = 54.904572 kcal Electronic energy + Delta-G solvation = -29445.930565 eV Core-core repulsion = 25602.720907 eV Total energy + Delta-G solvation = -3843.209658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 9.70 seconds Orbital eigenvalues (eV) -43.77483 -41.26517 -38.96377 -37.46140 -36.37897 -35.01223 -34.04345 -33.15061 -31.74058 -30.64335 -29.59780 -27.61802 -25.99939 -25.02467 -24.33067 -23.84256 -23.13618 -22.95625 -21.28076 -20.16059 -19.97274 -19.24695 -18.19024 -17.74350 -17.29130 -16.94060 -16.75700 -16.24419 -15.88902 -15.66566 -15.34421 -15.24656 -15.01691 -14.98622 -14.72704 -14.57285 -14.26277 -13.82896 -13.74786 -13.60458 -13.23856 -13.09366 -12.86223 -12.80076 -12.46598 -12.25016 -12.20022 -12.09019 -12.02165 -11.96274 -11.86974 -11.76436 -11.60841 -11.29709 -11.09692 -10.95286 -10.72432 -10.14283 -9.91235 -9.85976 -8.96018 -7.95788 -5.22555 0.57200 1.14120 1.41832 1.44650 1.51709 1.53115 2.14906 2.45728 2.54348 3.03076 3.27911 3.36832 3.57372 3.61351 3.76317 3.78878 3.88667 3.91554 3.94605 4.15973 4.23673 4.28456 4.30859 4.42145 4.44870 4.52277 4.63332 4.71524 4.74502 4.77208 4.86097 4.86502 4.88846 4.97144 4.99902 5.01161 5.04244 5.12178 5.14587 5.27634 5.30684 5.31287 5.35533 5.43209 5.47002 5.67147 5.90040 6.26107 6.57090 6.95182 7.28327 7.32843 8.08436 8.35984 9.27585 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.009236 B = 0.003918 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.975748 B = 7145.366005 C = 8861.303694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.208 3.792 3 C 0.146 3.854 4 N -0.730 5.730 5 C -0.244 4.244 6 H 0.066 0.934 7 C -0.072 4.072 8 N -0.966 5.966 9 Si 0.972 3.028 10 H -0.291 1.291 11 H -0.289 1.289 12 H -0.270 1.270 13 N -0.691 5.691 14 C 0.603 3.397 15 O -0.563 6.563 16 C -0.042 4.042 17 C -0.207 4.207 18 C 0.023 3.977 19 N -0.278 5.278 20 N -0.275 5.275 21 C 0.106 3.894 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.053 4.053 25 C -0.177 4.177 26 C -0.155 4.155 27 C -0.158 4.158 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.018 0.982 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.405 0.595 36 H 0.159 0.841 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.127 0.873 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.115 0.885 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.095 -17.619 13.122 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.123 3.877 3 C 0.018 3.982 4 N -0.373 5.373 5 C -0.376 4.376 6 H 0.084 0.916 7 C -0.264 4.264 8 N -0.617 5.617 9 Si 0.801 3.199 10 H -0.218 1.218 11 H -0.215 1.215 12 H -0.195 1.195 13 N -0.340 5.340 14 C 0.388 3.612 15 O -0.441 6.441 16 C -0.201 4.201 17 C -0.235 4.235 18 C -0.102 4.102 19 N -0.069 5.069 20 N -0.111 5.111 21 C -0.011 4.011 22 C -0.169 4.169 23 C -0.158 4.158 24 C -0.091 4.091 25 C -0.196 4.196 26 C -0.192 4.192 27 C -0.195 4.195 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.240 0.760 36 H 0.177 0.823 37 H 0.130 0.870 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.145 0.855 41 H 0.125 0.875 42 H 0.093 0.907 43 H 0.124 0.876 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.133 0.867 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.943 -17.597 12.483 23.755 hybrid contribution 1.036 1.290 0.105 1.658 sum -8.907 -16.307 12.587 22.443 Atomic orbital electron populations 1.22204 0.92579 1.03006 1.03437 1.19943 0.94473 0.90433 0.82852 1.21111 0.84284 0.95139 0.97624 1.42327 1.00818 1.05086 1.89088 1.19605 0.89775 0.87162 1.41090 0.91602 1.25486 0.97058 1.00118 1.03784 1.69817 1.06476 1.25765 1.59680 0.85165 0.77969 0.79531 0.77278 1.21841 1.21540 1.19540 1.45776 1.48526 1.35094 1.04604 1.17115 0.79091 0.82764 0.82193 1.90672 1.40903 1.26062 1.86418 1.21981 1.05308 0.97346 0.95503 1.21490 1.07952 1.03142 0.90908 1.21832 0.98859 0.92883 0.96600 1.46219 1.36503 1.22055 1.02096 1.73350 1.18245 1.13874 1.05675 1.22630 0.96598 0.83768 0.98148 1.21996 0.99093 1.05541 0.90298 1.21713 0.96838 0.94795 1.02472 1.20580 1.04713 0.99748 0.84068 1.22242 0.99915 1.00241 0.97237 1.23189 0.98994 1.01620 0.95424 1.22996 1.03468 0.90120 1.02952 0.92219 0.89758 0.90716 0.95750 0.96453 0.79210 0.94088 0.75980 0.82319 0.86991 0.88189 0.91236 0.85513 0.87465 0.90661 0.87647 0.88725 0.89573 0.86714 0.87904 0.87806 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 6.97 71.98 0.50 -4.37 16 2 C 0.21 7.80 0.54 3.60 0.00 7.80 16 3 C 0.15 6.96 5.03 86.38 0.43 7.40 16 4 N -0.73 -40.96 5.04 -343.45 -1.73 -42.69 16 5 C -0.24 -14.98 9.99 84.04 0.84 -14.14 16 6 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 7 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 8 N -0.97 -61.85 13.06 21.65 0.28 -61.57 16 9 Si 0.97 49.20 29.55 68.60 2.03 51.23 16 10 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 11 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 12 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 13 N -0.69 -26.74 4.72 -425.89 -2.01 -28.76 16 14 C 0.60 25.37 7.23 86.74 0.63 26.00 16 15 O -0.56 -26.38 13.16 -3.96 -0.05 -26.43 16 16 C -0.04 -1.61 7.13 42.48 0.30 -1.30 16 17 C -0.21 -6.72 10.75 22.30 0.24 -6.48 16 18 C 0.02 0.57 6.57 41.21 0.27 0.84 16 19 N -0.28 -7.19 3.74 -333.34 -1.25 -8.43 16 20 N -0.27 -9.31 11.73 -48.06 -0.56 -9.87 16 21 C 0.11 1.59 7.17 86.33 0.62 2.21 16 22 C -0.13 -1.13 5.91 30.69 0.18 -0.95 16 23 C -0.12 -0.93 5.98 30.80 0.18 -0.75 16 24 C -0.05 -0.72 6.28 30.03 0.19 -0.53 16 25 C -0.18 -5.92 4.84 -10.79 -0.05 -5.97 16 26 C -0.16 -3.89 9.63 30.60 0.29 -3.60 16 27 C -0.16 -3.95 9.82 30.60 0.30 -3.65 16 28 H 0.06 2.17 6.03 -2.38 -0.01 2.16 16 29 H 0.08 2.32 6.78 -2.39 -0.02 2.31 16 30 H 0.07 2.01 6.99 -2.39 -0.02 1.99 16 31 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.02 0.93 6.32 -2.38 -0.02 0.92 16 33 H 0.38 21.84 6.62 -92.71 -0.61 21.23 16 34 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.41 15.14 8.21 -92.71 -0.76 14.37 16 36 H 0.16 4.92 8.06 -2.91 -0.02 4.90 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.07 0.77 8.11 -2.39 -0.02 0.75 16 40 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.07 0.56 8.12 -2.39 -0.02 0.54 16 43 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.09 3.53 7.09 -2.39 -0.02 3.51 16 46 H 0.11 2.53 5.88 -2.39 -0.01 2.52 16 47 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 49 H 0.10 2.36 7.35 -2.39 -0.02 2.34 16 Total: -1.00 -81.93 386.65 1.71 -80.22 By element: Atomic # 1 Polarization: 48.14 SS G_CDS: -0.40 Total: 47.74 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 5.40 Total: -1.44 kcal Atomic # 7 Polarization: -146.05 SS G_CDS: -5.27 Total: -151.32 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.05 Total: -26.43 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.03 Total: 51.23 kcal Total: -81.93 1.71 -80.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481932773.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.120 kcal (2) G-P(sol) polarization free energy of solvation -81.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.70 seconds