Wall clock time and date at job start Tue Mar 31 2020 18:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46967 * 2 1 4 4 N 1.46500 * 109.46813 * 176.43604 * 3 2 1 5 5 C 1.34775 * 119.99599 * 82.38435 * 4 3 2 6 6 O 1.21684 * 119.99576 * 182.18548 * 5 4 3 7 7 C 1.46764 * 120.00612 * 2.17488 * 5 4 3 8 8 C 1.36549 * 126.83779 * 349.13016 * 7 5 4 9 9 N 1.33167 * 107.79724 * 180.02562 * 8 7 5 10 10 C 1.31374 * 109.77163 * 0.06729 * 9 8 7 11 11 N 1.34268 * 108.97096 * 359.83930 * 10 9 8 12 12 C 1.47002 * 111.32731 * 180.24236 * 11 10 9 13 13 C 1.54393 * 105.48886 * 342.93171 * 12 11 10 14 14 C 1.51645 * 141.06968 * 179.81675 * 10 9 8 15 15 C 1.46498 * 119.99981 * 262.37313 * 4 3 2 16 16 H 1.08996 * 110.88853 * 359.30302 * 15 4 3 17 17 C 1.55155 * 111.00209 * 123.18802 * 15 4 3 18 18 C 1.54327 * 102.94441 * 153.57630 * 17 15 4 19 19 N 1.47022 * 107.26980 * 337.80398 * 18 17 15 20 20 C 1.36935 * 125.64775 * 178.99481 * 19 18 17 21 21 H 1.07999 * 119.99734 * 185.34738 * 20 19 18 22 22 C 1.38807 * 119.99850 * 5.34912 * 20 19 18 23 23 N 1.31619 * 120.00255 * 5.61369 * 22 20 19 24 24 Si 1.86799 * 119.99847 * 185.60938 * 22 20 19 25 25 H 1.48503 * 109.47321 * 94.99540 * 24 22 20 26 26 H 1.48505 * 109.47503 * 214.99870 * 24 22 20 27 27 H 1.48507 * 109.47456 * 334.99571 * 24 22 20 28 28 C 1.47468 * 108.72393 * 358.97472 * 19 18 17 29 29 H 1.09005 * 109.46826 * 184.96237 * 1 2 3 30 30 H 1.08994 * 109.47324 * 304.96682 * 1 2 3 31 31 H 1.08998 * 109.46673 * 64.96740 * 1 2 3 32 32 H 1.08997 * 109.47501 * 240.00286 * 2 1 3 33 33 H 1.09002 * 109.47384 * 119.99697 * 2 1 3 34 34 H 1.09002 * 109.46927 * 56.43962 * 3 2 1 35 35 H 1.08996 * 109.46654 * 296.44021 * 3 2 1 36 36 H 1.07999 * 126.10173 * 0.26691 * 8 7 5 37 37 H 1.09002 * 110.23919 * 223.92404 * 12 11 10 38 38 H 1.09003 * 110.31287 * 101.97412 * 12 11 10 39 39 H 1.09006 * 110.98102 * 267.53875 * 13 12 11 40 40 H 1.08997 * 111.01999 * 143.74924 * 13 12 11 41 41 H 1.08997 * 110.48158 * 315.25805 * 14 10 9 42 42 H 1.09000 * 110.47493 * 77.88186 * 14 10 9 43 43 H 1.09007 * 110.72013 * 271.93861 * 17 15 4 44 44 H 1.09002 * 110.72183 * 35.20679 * 17 15 4 45 45 H 1.09001 * 109.88008 * 97.22311 * 18 17 15 46 46 H 1.09004 * 109.88066 * 218.23399 * 18 17 15 47 47 H 0.97002 * 119.99866 * 180.02562 * 23 22 20 48 48 H 1.09000 * 110.35311 * 265.25833 * 28 19 18 49 49 H 1.09005 * 110.40973 * 142.91319 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5025 1.4434 0.0859 5 6 4.2428 1.2652 -1.0261 6 8 5.4566 1.2261 -0.9491 7 6 3.5852 1.1180 -2.3299 8 6 2.2516 0.9335 -2.5580 9 7 2.0719 0.8474 -3.8747 10 6 3.2267 0.9669 -4.4895 11 7 4.1932 1.1390 -3.5735 12 6 5.5113 1.2848 -4.2079 13 6 5.3375 0.7526 -5.6467 14 6 3.8264 0.9746 -5.8824 15 6 4.1601 1.6383 1.3804 16 1 3.4248 1.7797 2.1724 17 6 5.1080 0.4540 1.7064 18 6 6.1545 1.0961 2.6413 19 7 6.1375 2.5440 2.3865 20 6 6.9087 3.4763 3.0277 21 1 6.7612 4.5276 2.8295 22 6 7.8799 3.0700 3.9324 23 7 8.1357 1.7889 4.0922 24 14 8.8239 4.3416 4.9229 25 1 8.1726 4.5225 6.2452 26 1 10.2214 3.8790 5.1187 27 1 8.8284 5.6346 4.1924 28 6 5.1528 2.8263 1.3257 29 1 -0.3633 -1.0239 0.0889 30 1 -0.3633 0.5889 0.8421 31 1 -0.3632 0.4348 -0.9311 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6254 1.9745 0.8564 35 1 1.7296 1.9376 -0.9202 36 1 1.4797 0.8726 -1.8051 37 1 6.2544 0.6925 -3.6738 38 1 5.8082 2.3334 -4.2268 39 1 5.5900 -0.3062 -5.7044 40 1 5.9319 1.3326 -6.3526 41 1 3.4106 0.1643 -6.4811 42 1 3.6532 1.9356 -6.3668 43 1 4.5685 -0.3417 2.2202 44 1 5.5807 0.0773 0.7992 45 1 5.8929 0.8995 3.6810 46 1 7.1431 0.6909 2.4250 47 1 8.8142 1.5050 4.7247 48 1 5.6439 2.8658 0.3533 49 1 4.6342 3.7635 1.5281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567684627.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:01 Heat of formation + Delta-G solvation = 96.488517 kcal Electronic energy + Delta-G solvation = -29958.853291 eV Core-core repulsion = 26117.446848 eV Total energy + Delta-G solvation = -3841.406443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -42.74653 -39.94972 -37.03780 -36.72857 -35.89280 -33.15194 -32.10103 -31.72155 -29.54585 -28.79725 -27.82981 -27.06207 -26.08320 -24.44575 -22.76545 -22.48445 -21.78383 -21.08573 -20.01363 -19.91899 -18.85948 -17.28869 -16.93205 -16.78834 -16.42483 -15.37487 -15.24158 -14.87336 -14.52952 -14.24786 -14.05809 -13.89345 -13.68558 -13.56519 -13.46034 -13.31774 -12.97350 -12.64818 -12.43071 -12.19759 -11.95690 -11.92830 -11.76813 -11.56111 -11.53055 -11.38968 -10.92369 -10.89352 -10.81218 -10.63693 -10.50485 -10.15561 -10.04119 -9.85760 -9.75427 -9.58216 -9.18473 -8.60117 -8.47513 -8.31684 -6.70607 -5.62323 -2.96818 1.31686 2.32533 2.73030 3.17887 3.40331 3.44194 3.48940 3.51431 3.57167 4.06857 4.32628 4.42733 4.50779 4.57867 4.74361 4.84295 5.03429 5.10505 5.13526 5.16949 5.20697 5.26743 5.29037 5.38902 5.45530 5.47661 5.49322 5.54134 5.61019 5.64089 5.82541 5.88538 5.89404 5.94477 6.03294 6.18657 6.27164 6.49794 6.51751 6.62055 6.70631 6.76713 6.77695 7.21044 7.53395 7.62229 7.77155 7.81994 7.92115 8.33735 8.38777 9.29481 9.90300 10.57609 11.48233 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.003412 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.794679 B = 8205.215122 C = 9611.686547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.160 4.160 3 C 0.086 3.914 4 N -0.589 5.589 5 C 0.584 3.416 6 O -0.519 6.519 7 C -0.055 4.055 8 C 0.006 3.994 9 N -0.486 5.486 10 C 0.198 3.802 11 N -0.440 5.440 12 C 0.099 3.901 13 C -0.130 4.130 14 C -0.042 4.042 15 C 0.134 3.866 16 H 0.095 0.905 17 C -0.154 4.154 18 C 0.183 3.817 19 N -0.600 5.600 20 C -0.225 4.225 21 H 0.076 0.924 22 C -0.009 4.009 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.127 3.873 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.212 0.788 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.031 0.969 46 H 0.056 0.944 47 H 0.251 0.749 48 H 0.040 0.960 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.026 -4.149 -18.508 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.199 4.199 3 C -0.038 4.038 4 N -0.320 5.320 5 C 0.371 3.629 6 O -0.396 6.396 7 C -0.172 4.172 8 C -0.147 4.147 9 N -0.205 5.205 10 C -0.064 4.064 11 N -0.121 5.121 12 C -0.023 4.023 13 C -0.168 4.168 14 C -0.081 4.081 15 C 0.031 3.969 16 H 0.113 0.887 17 C -0.193 4.193 18 C 0.058 3.942 19 N -0.327 5.327 20 C -0.353 4.353 21 H 0.094 0.906 22 C -0.206 4.206 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C 0.000 4.000 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.228 0.772 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.049 0.951 46 H 0.074 0.926 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -13.662 -4.222 -18.565 23.433 hybrid contribution 1.230 0.713 1.152 1.830 sum -12.432 -3.509 -17.413 21.681 Atomic orbital electron populations 1.21749 0.94743 1.02360 1.02152 1.22254 0.96455 0.97277 1.03871 1.22300 0.80048 0.97227 1.04184 1.47570 1.05977 1.71209 1.07260 1.16824 0.86336 0.77553 0.82142 1.90869 1.13018 1.49559 1.86154 1.20671 0.93210 1.17625 0.85673 1.24091 0.93996 1.03331 0.93277 1.69795 1.23771 1.21197 1.05700 1.24535 0.85136 1.03513 0.93214 1.46147 1.10190 1.50236 1.05530 1.22526 0.82795 1.03822 0.93110 1.22790 0.95722 1.03471 0.94808 1.20734 0.93406 1.04774 0.89162 1.22470 0.94583 0.98188 0.81642 0.88679 1.23263 0.98056 0.96514 1.01489 1.21073 0.95688 0.83039 0.94448 1.44332 1.44001 1.03423 1.40947 1.19055 1.11083 0.87785 1.17378 0.90578 1.24799 0.98921 0.96246 1.00594 1.69979 1.35298 1.12817 1.38704 0.86105 0.79209 0.80323 0.80173 1.21709 1.21789 1.20695 1.21838 0.90433 0.93811 0.93888 0.92180 0.92187 0.92309 0.90693 0.90651 0.89432 0.89025 0.77232 0.88081 0.88765 0.89253 0.87768 0.88184 0.88311 0.92706 0.90388 0.95117 0.92602 0.93876 0.94245 0.94898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.77 37.16 0.36 -0.78 16 2 C -0.16 -1.58 5.17 -26.73 -0.14 -1.72 16 3 C 0.09 0.95 4.94 -4.04 -0.02 0.93 16 4 N -0.59 -9.18 2.58 -165.17 -0.43 -9.61 16 5 C 0.58 10.23 6.86 -12.82 -0.09 10.14 16 6 O -0.52 -11.08 13.14 5.20 0.07 -11.01 16 7 C -0.06 -0.84 6.93 -82.04 -0.57 -1.41 16 8 C 0.01 0.08 8.31 -17.58 -0.15 -0.07 16 9 N -0.49 -6.71 11.21 -10.29 -0.12 -6.83 16 10 C 0.20 2.40 8.56 -154.92 -1.33 1.08 16 11 N -0.44 -5.90 3.64 -108.27 -0.39 -6.29 16 12 C 0.10 0.99 7.78 -3.04 -0.02 0.97 16 13 C -0.13 -0.76 7.18 -25.19 -0.18 -0.94 16 14 C -0.04 -0.29 6.86 -26.61 -0.18 -0.47 16 15 C 0.13 2.49 3.55 -65.78 -0.23 2.26 16 16 H 0.10 1.61 7.78 -51.93 -0.40 1.20 16 17 C -0.15 -3.20 6.30 -24.90 -0.16 -3.36 16 18 C 0.18 4.74 5.40 -3.06 -0.02 4.73 16 19 N -0.60 -16.35 3.40 -170.03 -0.58 -16.93 16 20 C -0.22 -6.57 10.27 -15.06 -0.15 -6.72 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 22 C -0.01 -0.28 5.46 -17.43 -0.10 -0.37 16 23 N -0.92 -28.10 10.42 55.49 0.58 -27.52 16 24 Si 0.91 22.80 29.56 -169.99 -5.02 17.78 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 C 0.13 2.90 6.61 -2.50 -0.02 2.88 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 7.49 -51.93 -0.39 0.02 16 32 H 0.07 0.82 5.99 -51.93 -0.31 0.51 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.85 7.80 -51.93 -0.41 0.45 16 35 H 0.09 0.96 4.84 -51.93 -0.25 0.71 16 36 H 0.21 2.30 2.39 -52.49 -0.13 2.18 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 44 H 0.08 1.74 5.90 -51.93 -0.31 1.43 16 45 H 0.03 0.85 7.82 -51.93 -0.41 0.44 16 46 H 0.06 1.64 7.08 -51.93 -0.37 1.28 16 47 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.04 0.98 5.88 -51.93 -0.31 0.68 16 49 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -36.76 373.92 -10.71 -47.47 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.47 Total: 0.16 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -2.98 Total: 7.14 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: -0.94 Total: -67.18 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.07 Total: -11.01 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.76 -10.71 -47.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567684627.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.956 kcal (2) G-P(sol) polarization free energy of solvation -36.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds