Wall clock time and date at job start Tue Mar 31 2020 18:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46967 * 2 1 4 4 N 1.46500 * 109.46813 * 176.43604 * 3 2 1 5 5 C 1.34775 * 119.99599 * 82.38435 * 4 3 2 6 6 O 1.21684 * 119.99576 * 182.18548 * 5 4 3 7 7 C 1.46764 * 120.00612 * 2.17488 * 5 4 3 8 8 C 1.36549 * 126.83779 * 349.13016 * 7 5 4 9 9 N 1.33167 * 107.79724 * 180.02562 * 8 7 5 10 10 C 1.31374 * 109.77163 * 0.06729 * 9 8 7 11 11 N 1.34268 * 108.97096 * 359.83930 * 10 9 8 12 12 C 1.47002 * 111.32731 * 180.24236 * 11 10 9 13 13 C 1.54393 * 105.48886 * 342.93171 * 12 11 10 14 14 C 1.51645 * 141.06968 * 179.81675 * 10 9 8 15 15 C 1.46498 * 119.99981 * 262.37313 * 4 3 2 16 16 H 1.08996 * 110.88853 * 359.30302 * 15 4 3 17 17 C 1.55155 * 111.00209 * 123.18802 * 15 4 3 18 18 C 1.54327 * 102.94441 * 153.57630 * 17 15 4 19 19 N 1.47022 * 107.26980 * 337.80398 * 18 17 15 20 20 C 1.36935 * 125.64775 * 178.99481 * 19 18 17 21 21 H 1.07999 * 119.99734 * 185.34738 * 20 19 18 22 22 C 1.38807 * 119.99850 * 5.34912 * 20 19 18 23 23 N 1.31619 * 120.00255 * 5.61369 * 22 20 19 24 24 Si 1.86799 * 119.99847 * 185.60938 * 22 20 19 25 25 H 1.48503 * 109.47321 * 94.99540 * 24 22 20 26 26 H 1.48505 * 109.47503 * 214.99870 * 24 22 20 27 27 H 1.48507 * 109.47456 * 334.99571 * 24 22 20 28 28 C 1.47468 * 108.72393 * 358.97472 * 19 18 17 29 29 H 1.09005 * 109.46826 * 184.96237 * 1 2 3 30 30 H 1.08994 * 109.47324 * 304.96682 * 1 2 3 31 31 H 1.08998 * 109.46673 * 64.96740 * 1 2 3 32 32 H 1.08997 * 109.47501 * 240.00286 * 2 1 3 33 33 H 1.09002 * 109.47384 * 119.99697 * 2 1 3 34 34 H 1.09002 * 109.46927 * 56.43962 * 3 2 1 35 35 H 1.08996 * 109.46654 * 296.44021 * 3 2 1 36 36 H 1.07999 * 126.10173 * 0.26691 * 8 7 5 37 37 H 1.09002 * 110.23919 * 223.92404 * 12 11 10 38 38 H 1.09003 * 110.31287 * 101.97412 * 12 11 10 39 39 H 1.09006 * 110.98102 * 267.53875 * 13 12 11 40 40 H 1.08997 * 111.01999 * 143.74924 * 13 12 11 41 41 H 1.08997 * 110.48158 * 315.25805 * 14 10 9 42 42 H 1.09000 * 110.47493 * 77.88186 * 14 10 9 43 43 H 1.09007 * 110.72013 * 271.93861 * 17 15 4 44 44 H 1.09002 * 110.72183 * 35.20679 * 17 15 4 45 45 H 1.09001 * 109.88008 * 97.22311 * 18 17 15 46 46 H 1.09004 * 109.88066 * 218.23399 * 18 17 15 47 47 H 0.97002 * 119.99866 * 180.02562 * 23 22 20 48 48 H 1.09000 * 110.35311 * 265.25833 * 28 19 18 49 49 H 1.09005 * 110.40973 * 142.91319 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5025 1.4434 0.0859 5 6 4.2428 1.2652 -1.0261 6 8 5.4566 1.2261 -0.9491 7 6 3.5852 1.1180 -2.3299 8 6 2.2516 0.9335 -2.5580 9 7 2.0719 0.8474 -3.8747 10 6 3.2267 0.9669 -4.4895 11 7 4.1932 1.1390 -3.5735 12 6 5.5113 1.2848 -4.2079 13 6 5.3375 0.7526 -5.6467 14 6 3.8264 0.9746 -5.8824 15 6 4.1601 1.6383 1.3804 16 1 3.4248 1.7797 2.1724 17 6 5.1080 0.4540 1.7064 18 6 6.1545 1.0961 2.6413 19 7 6.1375 2.5440 2.3865 20 6 6.9087 3.4763 3.0277 21 1 6.7612 4.5276 2.8295 22 6 7.8799 3.0700 3.9324 23 7 8.1357 1.7889 4.0922 24 14 8.8239 4.3416 4.9229 25 1 8.1726 4.5225 6.2452 26 1 10.2214 3.8790 5.1187 27 1 8.8284 5.6346 4.1924 28 6 5.1528 2.8263 1.3257 29 1 -0.3633 -1.0239 0.0889 30 1 -0.3633 0.5889 0.8421 31 1 -0.3632 0.4348 -0.9311 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6254 1.9745 0.8564 35 1 1.7296 1.9376 -0.9202 36 1 1.4797 0.8726 -1.8051 37 1 6.2544 0.6925 -3.6738 38 1 5.8082 2.3334 -4.2268 39 1 5.5900 -0.3062 -5.7044 40 1 5.9319 1.3326 -6.3526 41 1 3.4106 0.1643 -6.4811 42 1 3.6532 1.9356 -6.3668 43 1 4.5685 -0.3417 2.2202 44 1 5.5807 0.0773 0.7992 45 1 5.8929 0.8995 3.6810 46 1 7.1431 0.6909 2.4250 47 1 8.8142 1.5050 4.7247 48 1 5.6439 2.8658 0.3533 49 1 4.6342 3.7635 1.5281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567684627.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:56 Heat of formation + Delta-G solvation = 72.969331 kcal Electronic energy + Delta-G solvation = -29959.873159 eV Core-core repulsion = 26117.446848 eV Total energy + Delta-G solvation = -3842.426311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 5.10 seconds Orbital eigenvalues (eV) -43.71355 -41.30166 -38.52033 -38.01039 -36.91413 -34.75187 -33.43712 -32.87466 -31.21254 -30.19954 -28.97833 -28.31648 -27.15813 -26.41160 -23.91962 -23.36296 -22.65822 -22.33619 -21.95916 -20.99871 -20.07197 -18.95900 -18.39735 -17.75603 -17.42917 -16.96344 -16.55673 -16.36231 -16.06346 -15.77591 -15.22955 -14.94491 -14.76150 -14.52862 -14.39759 -14.24215 -14.19596 -14.17189 -13.82925 -13.67595 -13.33214 -13.05820 -12.88452 -12.75478 -12.60939 -12.52954 -12.43455 -12.21583 -12.07245 -12.03808 -12.02411 -11.87926 -11.73341 -11.49029 -11.31288 -10.77957 -10.73856 -10.64874 -9.78407 -9.46171 -8.90565 -7.86461 -5.25238 0.23310 1.32721 1.42799 1.45917 1.54950 1.71977 2.03734 2.19226 2.48178 2.81259 3.25833 3.31809 3.53338 3.65129 3.69555 3.84694 3.85589 3.89223 3.99455 4.10988 4.18283 4.19702 4.26037 4.36629 4.42797 4.50694 4.52121 4.59825 4.64861 4.69546 4.80251 4.85730 4.90668 4.94473 4.96511 5.04037 5.07193 5.14952 5.22619 5.27566 5.37909 5.46759 5.53985 5.58744 5.67496 5.69542 5.86731 6.15674 6.30603 6.81482 7.04966 7.08933 7.72158 8.38594 9.22942 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.003412 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.794679 B = 8205.215122 C = 9611.686547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.154 4.154 3 C 0.081 3.919 4 N -0.583 5.583 5 C 0.580 3.420 6 O -0.572 6.572 7 C -0.096 4.096 8 C 0.026 3.974 9 N -0.512 5.512 10 C 0.206 3.794 11 N -0.454 5.454 12 C 0.086 3.914 13 C -0.111 4.111 14 C -0.039 4.039 15 C 0.155 3.845 16 H 0.125 0.875 17 C -0.139 4.139 18 C 0.193 3.807 19 N -0.620 5.620 20 C -0.246 4.246 21 H 0.081 0.919 22 C -0.067 4.067 23 N -0.951 5.951 24 Si 0.984 3.016 25 H -0.281 1.281 26 H -0.294 1.294 27 H -0.268 1.268 28 C 0.125 3.875 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.230 0.770 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.139 0.861 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.009 0.991 46 H 0.008 0.992 47 H 0.247 0.753 48 H 0.015 0.985 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.436 -3.501 -20.143 26.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C -0.040 4.040 4 N -0.313 5.313 5 C 0.370 3.630 6 O -0.453 6.453 7 C -0.211 4.211 8 C -0.128 4.128 9 N -0.231 5.231 10 C -0.057 4.057 11 N -0.135 5.135 12 C -0.035 4.035 13 C -0.149 4.149 14 C -0.078 4.078 15 C 0.051 3.949 16 H 0.142 0.858 17 C -0.178 4.178 18 C 0.068 3.932 19 N -0.347 5.347 20 C -0.375 4.375 21 H 0.099 0.901 22 C -0.260 4.260 23 N -0.600 5.600 24 Si 0.812 3.188 25 H -0.208 1.208 26 H -0.221 1.221 27 H -0.193 1.193 28 C -0.001 4.001 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.246 0.754 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.157 0.843 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.028 0.972 46 H 0.027 0.973 47 H 0.057 0.943 48 H 0.033 0.967 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.130 -3.565 -20.228 26.116 hybrid contribution 1.981 0.510 1.557 2.571 sum -14.149 -3.055 -18.670 23.624 Atomic orbital electron populations 1.21726 0.92487 1.03112 1.03155 1.22173 0.98218 0.95897 1.02908 1.22631 0.77007 0.98641 1.05758 1.47559 1.07757 1.70409 1.05624 1.17237 0.85847 0.76517 0.83390 1.90839 1.15292 1.52133 1.86990 1.20499 0.94081 1.21078 0.85478 1.24412 0.93520 1.01094 0.93760 1.69851 1.24727 1.22724 1.05817 1.25639 0.84446 1.00499 0.95125 1.46484 1.11554 1.50208 1.05283 1.22811 0.81396 1.03865 0.95388 1.22854 0.95613 1.04326 0.92099 1.21065 0.93337 1.06911 0.86473 1.22152 0.94188 0.94649 0.83924 0.85769 1.23033 0.97325 0.97777 0.99634 1.20779 0.94948 0.83092 0.94385 1.44641 1.44766 1.03632 1.41641 1.19473 1.11730 0.88557 1.17754 0.90122 1.25742 1.00007 0.98402 1.01817 1.70222 1.35757 1.14851 1.39174 0.84980 0.77183 0.78066 0.78589 1.20778 1.22077 1.19305 1.21907 0.90494 0.96278 0.91395 0.91655 0.90977 0.91470 0.92026 0.91338 0.87099 0.88054 0.75415 0.90356 0.88679 0.88558 0.84317 0.85960 0.86004 0.89755 0.92234 0.97232 0.97338 0.94340 0.96687 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.77 71.98 0.70 -1.07 16 2 C -0.15 -2.72 5.17 30.60 0.16 -2.56 16 3 C 0.08 1.63 4.94 86.38 0.43 2.05 16 4 N -0.58 -17.94 2.58 -794.68 -2.05 -20.00 16 5 C 0.58 20.95 6.86 86.47 0.59 21.54 16 6 O -0.57 -25.98 13.14 -4.30 -0.06 -26.03 16 7 C -0.10 -2.93 6.93 39.93 0.28 -2.65 16 8 C 0.03 0.66 8.31 84.10 0.70 1.36 16 9 N -0.51 -13.34 11.21 -186.47 -2.09 -15.43 16 10 C 0.21 4.64 8.56 138.42 1.19 5.83 16 11 N -0.45 -12.14 3.64 -496.46 -1.81 -13.94 16 12 C 0.09 1.74 7.78 86.76 0.68 2.41 16 13 C -0.11 -1.01 7.18 31.59 0.23 -0.78 16 14 C -0.04 -0.42 6.86 30.67 0.21 -0.21 16 15 C 0.15 5.71 3.55 46.39 0.16 5.87 16 16 H 0.12 3.91 7.78 -2.39 -0.02 3.89 16 17 C -0.14 -5.91 6.30 31.78 0.20 -5.71 16 18 C 0.19 10.56 5.40 86.73 0.47 11.03 16 19 N -0.62 -35.02 3.40 -691.84 -2.35 -37.37 16 20 C -0.25 -14.79 10.27 84.03 0.86 -13.93 16 21 H 0.08 4.63 7.83 -2.91 -0.02 4.61 16 22 C -0.07 -4.01 5.46 84.86 0.46 -3.54 16 23 N -0.95 -60.45 10.42 21.65 0.23 -60.22 16 24 Si 0.98 47.72 29.56 68.60 2.03 49.75 16 25 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 26 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 27 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 28 C 0.13 5.86 6.61 86.85 0.57 6.43 16 29 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.71 7.49 -2.39 -0.02 0.70 16 32 H 0.06 1.27 5.99 -2.39 -0.01 1.26 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.11 1.77 7.80 -2.39 -0.02 1.75 16 35 H 0.10 1.90 4.84 -2.39 -0.01 1.89 16 36 H 0.23 4.58 2.39 -2.91 -0.01 4.57 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 44 H 0.06 2.79 5.90 -2.39 -0.01 2.77 16 45 H 0.01 0.55 7.82 -2.39 -0.02 0.53 16 46 H 0.01 0.53 7.08 -2.38 -0.02 0.51 16 47 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 48 H 0.02 0.80 5.88 -2.39 -0.01 0.78 16 49 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -85.83 373.92 2.75 -83.08 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.96 Total: 14.08 kcal Atomic # 6 Polarization: 18.18 SS G_CDS: 7.89 Total: 26.07 kcal Atomic # 7 Polarization: -138.89 SS G_CDS: -8.07 Total: -146.96 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.06 Total: -26.03 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -85.83 2.75 -83.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567684627.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.053 kcal (2) G-P(sol) polarization free energy of solvation -85.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.10 seconds