Wall clock time and date at job start Tue Mar 31 2020 19:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46994 * 2 1 4 4 N 1.46507 * 109.46859 * 179.97438 * 3 2 1 5 5 C 1.36934 * 119.99623 * 179.97438 * 4 3 2 6 6 H 1.08006 * 119.99862 * 0.02562 * 5 4 3 7 7 C 1.38810 * 119.99797 * 179.97438 * 5 4 3 8 8 N 1.31625 * 119.99863 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00175 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.46647 * 89.99690 * 9 7 5 11 11 H 1.48495 * 109.47154 * 209.99852 * 9 7 5 12 12 H 1.48502 * 109.46852 * 330.00079 * 9 7 5 13 13 N 1.46499 * 109.47445 * 120.00022 * 2 1 3 14 14 C 1.34777 * 119.99754 * 295.80522 * 13 2 1 15 15 O 1.21634 * 119.99877 * 5.57152 * 14 13 2 16 16 C 1.47159 * 119.99925 * 185.56813 * 14 13 2 17 17 C 1.38409 * 126.88176 * 174.10883 * 16 14 13 18 18 C 1.39680 * 105.35910 * 180.02562 * 17 16 14 19 19 N 1.30865 * 107.85989 * 359.97438 * 18 17 16 20 20 N 1.28451 * 110.92880 * 359.71969 * 19 18 17 21 21 C 1.46497 * 125.19257 * 180.28251 * 20 19 18 22 22 C 1.53778 * 113.61324 * 9.45634 * 21 20 19 23 23 C 1.53959 * 87.01761 * 220.05280 * 22 21 20 24 24 C 1.53775 * 87.11159 * 25.36584 * 23 22 21 25 25 C 1.53005 * 109.47337 * 240.00284 * 2 1 3 26 26 C 1.52993 * 117.49675 * 13.56267 * 25 2 1 27 27 C 1.53001 * 117.49626 * 304.90445 * 25 2 1 28 28 H 1.09003 * 109.47006 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47400 * 300.00021 * 1 2 3 30 30 H 1.09004 * 109.47215 * 60.00237 * 1 2 3 31 31 H 1.08994 * 109.46860 * 299.99846 * 3 2 1 32 32 H 1.08996 * 109.47064 * 59.99773 * 3 2 1 33 33 H 0.96993 * 120.00030 * 0.02562 * 4 3 2 34 34 H 0.96996 * 120.00055 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00310 * 115.79797 * 13 2 1 36 36 H 1.07996 * 127.32405 * 359.97438 * 17 16 14 37 37 H 1.07990 * 126.07224 * 180.02562 * 18 17 16 38 38 H 1.08994 * 112.85177 * 140.65792 * 21 20 19 39 39 H 1.08997 * 113.61867 * 334.57069 * 22 21 20 40 40 H 1.09005 * 113.61051 * 105.47874 * 22 21 20 41 41 H 1.09000 * 113.53373 * 270.81166 * 23 22 21 42 42 H 1.08998 * 113.74278 * 139.94850 * 23 22 21 43 43 H 1.09005 * 113.61110 * 220.09083 * 24 23 22 44 44 H 1.08999 * 113.61482 * 89.18963 * 24 23 22 45 45 H 1.08997 * 115.55068 * 159.23658 * 25 2 1 46 46 H 1.08994 * 117.50230 * 0.02562 * 26 25 2 47 47 H 1.09006 * 117.49711 * 145.02381 * 26 25 2 48 48 H 1.08996 * 117.49821 * 214.97926 * 27 25 2 49 49 H 1.09002 * 117.49920 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1896 2.6285 0.0002 6 1 3.6495 3.5638 -0.0002 7 6 5.5777 2.6285 0.0013 8 7 6.2358 3.7684 0.0014 9 14 6.5118 1.0107 0.0027 10 1 6.7603 0.5816 -1.3970 11 1 7.8088 1.1886 0.7036 12 1 5.7087 -0.0239 0.7025 13 7 2.0184 -0.6906 1.1961 14 6 1.7640 -0.1829 2.4184 15 8 1.0445 0.7910 2.5348 16 6 2.3565 -0.8068 3.6122 17 6 2.2855 -0.3424 4.9142 18 6 2.9970 -1.2710 5.6775 19 7 3.4415 -2.1989 4.8688 20 7 3.0817 -1.9635 3.6584 21 6 3.4038 -2.8047 2.5031 22 6 4.0370 -4.1542 2.8811 23 6 4.9743 -3.9609 1.6751 24 6 4.7435 -2.4492 1.8368 25 6 2.0400 -0.7212 -1.2493 26 6 1.0317 -0.9984 -2.3661 27 6 1.5433 -2.1475 -1.4938 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.9900 0.6025 0.0006 34 1 7.2058 3.7684 0.0018 35 1 2.5247 -1.5132 1.1085 36 1 1.7869 0.5489 5.2652 37 1 3.1520 -1.2308 6.7455 38 1 2.5760 -2.8926 1.7995 39 1 4.5526 -4.1409 3.8413 40 1 3.3574 -5.0000 2.7760 41 1 4.5760 -4.3664 0.7450 42 1 6.0026 -4.2684 1.8648 43 1 4.6335 -1.9205 0.8899 44 1 5.4526 -1.9689 2.5110 45 1 3.0637 -0.4876 -1.5420 46 1 0.0051 -0.6667 -2.2110 47 1 1.3921 -0.9476 -3.3936 48 1 2.2401 -2.8522 -1.9477 49 1 0.8529 -2.5719 -0.7649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698643984.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:59 Heat of formation + Delta-G solvation = 124.415942 kcal Electronic energy + Delta-G solvation = -31059.985796 eV Core-core repulsion = 27219.790378 eV Total energy + Delta-G solvation = -3840.195419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -42.61969 -40.13467 -38.81603 -37.82777 -34.88327 -33.74963 -32.10988 -31.44668 -30.75448 -29.63493 -26.20273 -26.09097 -25.84426 -24.20681 -22.73412 -22.35551 -21.89726 -21.75570 -20.31403 -19.78128 -19.00023 -18.08674 -17.69905 -16.55500 -16.14517 -15.67136 -15.48265 -15.26503 -14.87716 -14.66234 -14.35578 -14.09844 -13.74567 -13.46099 -13.26657 -13.00027 -12.87450 -12.82433 -12.50458 -12.43617 -12.27237 -12.10395 -11.78946 -11.53776 -11.25758 -11.14017 -11.08173 -11.01261 -10.88545 -10.82440 -10.60703 -10.40017 -10.21560 -10.00759 -9.63353 -9.56836 -9.11322 -8.99052 -8.82578 -8.78018 -7.16393 -5.73449 -3.07375 1.38212 2.35831 2.69031 3.04093 3.28727 3.32194 3.41132 3.45041 3.84009 3.89270 4.09463 4.27025 4.41859 4.55659 4.58449 4.62720 4.84798 4.90122 4.95750 5.02396 5.11619 5.21789 5.28651 5.36166 5.45122 5.48724 5.55907 5.57424 5.58137 5.60303 5.66667 5.72294 5.78497 5.85267 5.88193 5.93160 6.01613 6.04970 6.06854 6.23331 6.36227 6.47256 6.58092 6.70960 6.78643 6.94864 7.60092 8.03710 8.05917 8.34763 8.45276 9.24305 9.96189 10.16895 11.45408 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.008493 B = 0.006089 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.233752 B = 4597.303633 C = 5292.483519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.197 3.803 3 C 0.146 3.854 4 N -0.749 5.749 5 C -0.233 4.233 6 H 0.090 0.910 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.878 3.122 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.275 1.275 13 N -0.719 5.719 14 C 0.598 3.402 15 O -0.511 6.511 16 C -0.034 4.034 17 C -0.159 4.159 18 C -0.008 4.008 19 N -0.277 5.277 20 N -0.267 5.267 21 C 0.103 3.897 22 C -0.126 4.126 23 C -0.139 4.139 24 C -0.149 4.149 25 C -0.158 4.158 26 C -0.164 4.164 27 C -0.188 4.188 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.357 0.643 34 H 0.258 0.742 35 H 0.391 0.609 36 H 0.163 0.837 37 H 0.186 0.814 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.103 0.897 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.229 -19.349 2.801 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.112 3.888 3 C 0.019 3.981 4 N -0.395 5.395 5 C -0.363 4.363 6 H 0.108 0.892 7 C -0.193 4.193 8 N -0.584 5.584 9 Si 0.709 3.291 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.202 1.202 13 N -0.375 5.375 14 C 0.383 3.617 15 O -0.385 6.385 16 C -0.161 4.161 17 C -0.188 4.188 18 C -0.184 4.184 19 N -0.109 5.109 20 N -0.056 5.056 21 C 0.002 3.998 22 C -0.163 4.163 23 C -0.177 4.177 24 C -0.188 4.188 25 C -0.176 4.176 26 C -0.201 4.201 27 C -0.225 4.225 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.189 0.811 34 H 0.068 0.932 35 H 0.230 0.770 36 H 0.180 0.820 37 H 0.203 0.797 38 H 0.141 0.859 39 H 0.126 0.874 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.116 0.884 45 H 0.135 0.865 46 H 0.121 0.879 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.074 -19.426 2.706 21.611 hybrid contribution 0.786 -0.562 -0.038 0.967 sum -8.288 -19.988 2.669 21.802 Atomic orbital electron populations 1.22290 0.94202 1.01763 1.03884 1.20165 0.93631 0.93364 0.81657 1.21076 0.85178 0.91411 1.00457 1.42574 1.00682 1.05022 1.91174 1.19073 0.89438 0.85889 1.41944 0.89202 1.24640 0.96074 0.96024 1.02586 1.69693 1.06826 1.23698 1.58155 0.86647 0.79921 0.85006 0.77513 1.21292 1.21906 1.20154 1.46399 1.57527 1.28090 1.05438 1.16827 0.80322 0.83146 0.81400 1.90771 1.36591 1.25384 1.85704 1.21895 1.04816 0.92307 0.97092 1.22181 1.04154 1.02145 0.90336 1.23561 1.01483 0.93268 1.00096 1.72982 1.21288 1.26502 0.90120 1.45776 1.36693 1.17093 1.06086 1.23521 0.98424 0.92659 0.85218 1.23188 0.98521 0.93958 1.00675 1.22805 1.01097 0.95344 0.98460 1.23591 0.95199 0.97919 1.02079 1.22566 1.00684 0.97418 0.96982 1.23065 0.99486 1.01831 0.95738 1.23016 1.04194 0.91411 1.03910 0.92861 0.90154 0.91139 0.94612 0.92572 0.81071 0.93212 0.77037 0.81958 0.79700 0.85897 0.87418 0.90133 0.89198 0.89807 0.89562 0.88414 0.86520 0.87864 0.88552 0.88749 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 7.12 37.16 0.26 -1.93 16 2 C 0.20 3.05 0.54 -131.82 -0.07 2.97 16 3 C 0.15 2.99 4.90 -4.03 -0.02 2.97 16 4 N -0.75 -17.82 4.85 -59.90 -0.29 -18.11 16 5 C -0.23 -6.74 10.47 -15.06 -0.16 -6.90 16 6 H 0.09 2.82 8.06 -52.48 -0.42 2.40 16 7 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 8 N -0.94 -29.93 13.97 55.49 0.78 -29.15 16 9 Si 0.88 21.94 27.74 -169.99 -4.71 17.23 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 12 H -0.28 -6.22 5.64 56.52 0.32 -5.90 16 13 N -0.72 -11.02 4.67 -48.75 -0.23 -11.25 16 14 C 0.60 10.57 7.20 -12.64 -0.09 10.48 16 15 O -0.51 -10.30 13.16 5.25 0.07 -10.23 16 16 C -0.03 -0.56 6.96 -82.06 -0.57 -1.13 16 17 C -0.16 -2.42 10.85 -38.98 -0.42 -2.84 16 18 C -0.01 -0.10 12.03 -17.43 -0.21 -0.31 16 19 N -0.28 -3.95 10.78 30.59 0.33 -3.62 16 20 N -0.27 -3.83 3.54 -49.91 -0.18 -4.01 16 21 C 0.10 1.18 3.32 -67.12 -0.22 0.96 16 22 C -0.13 -1.13 7.56 -25.83 -0.20 -1.33 16 23 C -0.14 -1.20 8.09 -25.83 -0.21 -1.40 16 24 C -0.15 -1.85 7.43 -25.92 -0.19 -2.04 16 25 C -0.16 -2.12 4.85 -90.62 -0.44 -2.56 16 26 C -0.16 -1.77 9.65 -26.70 -0.26 -2.03 16 27 C -0.19 -1.87 9.75 -26.69 -0.26 -2.13 16 28 H 0.05 0.61 6.96 -51.93 -0.36 0.25 16 29 H 0.08 1.24 6.29 -51.93 -0.33 0.92 16 30 H 0.07 0.85 6.74 -51.93 -0.35 0.50 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.29 6.06 -51.93 -0.31 0.98 16 33 H 0.36 8.10 4.48 -40.82 -0.18 7.91 16 34 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 35 H 0.39 5.19 3.37 -40.82 -0.14 5.05 16 36 H 0.16 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.19 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.12 1.22 6.22 -51.93 -0.32 0.90 16 39 H 0.11 1.09 7.44 -51.93 -0.39 0.70 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.16 6.92 -51.93 -0.36 0.80 16 44 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.12 1.83 7.08 -51.93 -0.37 1.46 16 46 H 0.10 1.03 5.89 -51.93 -0.31 0.73 16 47 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.09 0.85 7.29 -51.93 -0.38 0.47 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -34.79 379.02 -8.92 -43.71 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -7.24 Total: 16.99 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -3.15 Total: -7.27 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: 0.41 Total: -66.14 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.79 -8.92 -43.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698643984.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.128 kcal (2) G-P(sol) polarization free energy of solvation -34.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds