Wall clock time and date at job start Tue Mar 31 2020 19:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46994 * 2 1 4 4 N 1.46507 * 109.46859 * 179.97438 * 3 2 1 5 5 C 1.36934 * 119.99623 * 179.97438 * 4 3 2 6 6 H 1.08006 * 119.99862 * 0.02562 * 5 4 3 7 7 C 1.38810 * 119.99797 * 179.97438 * 5 4 3 8 8 N 1.31625 * 119.99863 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00175 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.46647 * 89.99690 * 9 7 5 11 11 H 1.48495 * 109.47154 * 209.99852 * 9 7 5 12 12 H 1.48502 * 109.46852 * 330.00079 * 9 7 5 13 13 N 1.46499 * 109.47445 * 120.00022 * 2 1 3 14 14 C 1.34777 * 119.99754 * 295.80522 * 13 2 1 15 15 O 1.21634 * 119.99877 * 5.57152 * 14 13 2 16 16 C 1.47159 * 119.99925 * 185.56813 * 14 13 2 17 17 C 1.38409 * 126.88176 * 174.10883 * 16 14 13 18 18 C 1.39680 * 105.35910 * 180.02562 * 17 16 14 19 19 N 1.30865 * 107.85989 * 359.97438 * 18 17 16 20 20 N 1.28451 * 110.92880 * 359.71969 * 19 18 17 21 21 C 1.46497 * 125.19257 * 180.28251 * 20 19 18 22 22 C 1.53778 * 113.61324 * 9.45634 * 21 20 19 23 23 C 1.53959 * 87.01761 * 220.05280 * 22 21 20 24 24 C 1.53775 * 87.11159 * 25.36584 * 23 22 21 25 25 C 1.53005 * 109.47337 * 240.00284 * 2 1 3 26 26 C 1.52993 * 117.49675 * 13.56267 * 25 2 1 27 27 C 1.53001 * 117.49626 * 304.90445 * 25 2 1 28 28 H 1.09003 * 109.47006 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47400 * 300.00021 * 1 2 3 30 30 H 1.09004 * 109.47215 * 60.00237 * 1 2 3 31 31 H 1.08994 * 109.46860 * 299.99846 * 3 2 1 32 32 H 1.08996 * 109.47064 * 59.99773 * 3 2 1 33 33 H 0.96993 * 120.00030 * 0.02562 * 4 3 2 34 34 H 0.96996 * 120.00055 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00310 * 115.79797 * 13 2 1 36 36 H 1.07996 * 127.32405 * 359.97438 * 17 16 14 37 37 H 1.07990 * 126.07224 * 180.02562 * 18 17 16 38 38 H 1.08994 * 112.85177 * 140.65792 * 21 20 19 39 39 H 1.08997 * 113.61867 * 334.57069 * 22 21 20 40 40 H 1.09005 * 113.61051 * 105.47874 * 22 21 20 41 41 H 1.09000 * 113.53373 * 270.81166 * 23 22 21 42 42 H 1.08998 * 113.74278 * 139.94850 * 23 22 21 43 43 H 1.09005 * 113.61110 * 220.09083 * 24 23 22 44 44 H 1.08999 * 113.61482 * 89.18963 * 24 23 22 45 45 H 1.08997 * 115.55068 * 159.23658 * 25 2 1 46 46 H 1.08994 * 117.50230 * 0.02562 * 26 25 2 47 47 H 1.09006 * 117.49711 * 145.02381 * 26 25 2 48 48 H 1.08996 * 117.49821 * 214.97926 * 27 25 2 49 49 H 1.09002 * 117.49920 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1896 2.6285 0.0002 6 1 3.6495 3.5638 -0.0002 7 6 5.5777 2.6285 0.0013 8 7 6.2358 3.7684 0.0014 9 14 6.5118 1.0107 0.0027 10 1 6.7603 0.5816 -1.3970 11 1 7.8088 1.1886 0.7036 12 1 5.7087 -0.0239 0.7025 13 7 2.0184 -0.6906 1.1961 14 6 1.7640 -0.1829 2.4184 15 8 1.0445 0.7910 2.5348 16 6 2.3565 -0.8068 3.6122 17 6 2.2855 -0.3424 4.9142 18 6 2.9970 -1.2710 5.6775 19 7 3.4415 -2.1989 4.8688 20 7 3.0817 -1.9635 3.6584 21 6 3.4038 -2.8047 2.5031 22 6 4.0370 -4.1542 2.8811 23 6 4.9743 -3.9609 1.6751 24 6 4.7435 -2.4492 1.8368 25 6 2.0400 -0.7212 -1.2493 26 6 1.0317 -0.9984 -2.3661 27 6 1.5433 -2.1475 -1.4938 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.9900 0.6025 0.0006 34 1 7.2058 3.7684 0.0018 35 1 2.5247 -1.5132 1.1085 36 1 1.7869 0.5489 5.2652 37 1 3.1520 -1.2308 6.7455 38 1 2.5760 -2.8926 1.7995 39 1 4.5526 -4.1409 3.8413 40 1 3.3574 -5.0000 2.7760 41 1 4.5760 -4.3664 0.7450 42 1 6.0026 -4.2684 1.8648 43 1 4.6335 -1.9205 0.8899 44 1 5.4526 -1.9689 2.5110 45 1 3.0637 -0.4876 -1.5420 46 1 0.0051 -0.6667 -2.2110 47 1 1.3921 -0.9476 -3.3936 48 1 2.2401 -2.8522 -1.9477 49 1 0.8529 -2.5719 -0.7649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698643984.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:39 Heat of formation + Delta-G solvation = 101.079981 kcal Electronic energy + Delta-G solvation = -31060.997720 eV Core-core repulsion = 27219.790378 eV Total energy + Delta-G solvation = -3841.207342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 17.57 seconds Orbital eigenvalues (eV) -43.70411 -41.39632 -39.66111 -39.00898 -36.55342 -35.24499 -33.65690 -32.81624 -32.27039 -30.89050 -27.84656 -26.91759 -26.73266 -25.54956 -24.08613 -23.71415 -23.13517 -22.75735 -21.43370 -20.79763 -20.24212 -19.74820 -19.14251 -17.59816 -17.16422 -16.99761 -16.70833 -16.55221 -16.34691 -15.94983 -15.68478 -15.51793 -14.94842 -14.75929 -14.62095 -14.28678 -14.19564 -13.92587 -13.91796 -13.67555 -13.41887 -13.31243 -13.19039 -12.90994 -12.43747 -12.39639 -12.31001 -12.20709 -12.04591 -11.96688 -11.90705 -11.63133 -11.52668 -11.31753 -11.13763 -11.03503 -10.83729 -10.33563 -10.11646 -9.99792 -9.30314 -8.06671 -5.39285 0.16254 1.23800 1.32256 1.35294 1.39102 1.59563 1.83862 2.18349 2.42022 2.93533 3.04311 3.22962 3.28470 3.31659 3.49986 3.58922 3.67200 3.68117 3.79231 3.91015 4.08472 4.13307 4.15612 4.32401 4.32524 4.47803 4.55053 4.60516 4.64684 4.73099 4.78421 4.80611 4.82594 4.88352 4.90379 4.92598 5.00082 5.01632 5.05697 5.20477 5.28852 5.30784 5.38633 5.46705 5.51355 5.69645 5.71394 6.15742 6.36537 6.93514 7.02953 7.07396 7.77213 8.00790 9.15266 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.008493 B = 0.006089 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.233752 B = 4597.303633 C = 5292.483519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.205 3.795 3 C 0.144 3.856 4 N -0.742 5.742 5 C -0.230 4.230 6 H 0.047 0.953 7 C -0.066 4.066 8 N -0.985 5.985 9 Si 0.952 3.048 10 H -0.270 1.270 11 H -0.301 1.301 12 H -0.245 1.245 13 N -0.707 5.707 14 C 0.591 3.409 15 O -0.547 6.547 16 C -0.064 4.064 17 C -0.174 4.174 18 C -0.005 4.005 19 N -0.279 5.279 20 N -0.262 5.262 21 C 0.089 3.911 22 C -0.115 4.115 23 C -0.121 4.121 24 C -0.165 4.165 25 C -0.188 4.188 26 C -0.158 4.158 27 C -0.157 4.157 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.032 0.968 32 H 0.025 0.975 33 H 0.365 0.635 34 H 0.257 0.743 35 H 0.402 0.598 36 H 0.163 0.837 37 H 0.220 0.780 38 H 0.141 0.859 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.094 0.906 46 H 0.112 0.888 47 H 0.104 0.896 48 H 0.115 0.885 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.622 -24.206 2.055 26.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.120 3.880 3 C 0.017 3.983 4 N -0.388 5.388 5 C -0.361 4.361 6 H 0.065 0.935 7 C -0.257 4.257 8 N -0.636 5.636 9 Si 0.779 3.221 10 H -0.196 1.196 11 H -0.228 1.228 12 H -0.169 1.169 13 N -0.363 5.363 14 C 0.377 3.623 15 O -0.424 6.424 16 C -0.192 4.192 17 C -0.204 4.204 18 C -0.180 4.180 19 N -0.112 5.112 20 N -0.052 5.052 21 C -0.011 4.011 22 C -0.153 4.153 23 C -0.159 4.159 24 C -0.204 4.204 25 C -0.207 4.207 26 C -0.195 4.195 27 C -0.194 4.194 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.199 0.801 34 H 0.065 0.935 35 H 0.243 0.757 36 H 0.181 0.819 37 H 0.237 0.763 38 H 0.158 0.842 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.136 0.864 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.112 0.888 46 H 0.131 0.869 47 H 0.122 0.878 48 H 0.134 0.866 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.496 -24.347 1.939 26.205 hybrid contribution 0.861 1.085 0.216 1.401 sum -8.636 -23.262 2.155 24.906 Atomic orbital electron populations 1.22234 0.92382 1.03443 1.03354 1.20013 0.94828 0.90274 0.82887 1.21132 0.83140 0.95413 0.98614 1.42423 1.02034 1.03575 1.90777 1.18998 0.89818 0.86313 1.41020 0.93478 1.25525 0.97051 1.00403 1.02762 1.69903 1.07019 1.26740 1.59914 0.85477 0.77749 0.80485 0.78417 1.19555 1.22812 1.16925 1.46362 1.57057 1.28192 1.04738 1.17126 0.79958 0.82800 0.82378 1.90752 1.38304 1.27011 1.86339 1.21911 1.06400 0.93811 0.97028 1.22448 1.04584 1.02714 0.90623 1.24115 1.00262 0.92113 1.01530 1.72991 1.21173 1.26710 0.90305 1.46061 1.35812 1.16580 1.06758 1.23978 0.98658 0.93604 0.84902 1.23161 0.98612 0.93179 1.00326 1.22838 1.01711 0.91862 0.99455 1.23623 0.95327 1.00544 1.00874 1.22328 1.00302 1.01010 0.97088 1.23207 0.99089 1.01796 0.95446 1.23164 1.03534 0.89740 1.02937 0.89936 0.92616 0.89821 0.95000 0.95744 0.80080 0.93452 0.75666 0.81933 0.76314 0.84177 0.88667 0.87470 0.86391 0.89084 0.90739 0.91185 0.88831 0.86937 0.87786 0.86635 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 7.12 71.98 0.51 -3.46 16 2 C 0.21 6.17 0.54 3.61 0.00 6.17 16 3 C 0.14 6.09 4.90 86.38 0.42 6.51 16 4 N -0.74 -36.15 4.85 -343.43 -1.67 -37.82 16 5 C -0.23 -13.91 10.47 84.03 0.88 -13.03 16 6 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 7 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 8 N -0.98 -65.52 13.97 21.65 0.30 -65.22 16 9 Si 0.95 45.95 27.74 68.60 1.90 47.86 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 12 H -0.24 -10.40 5.64 99.48 0.56 -9.84 16 13 N -0.71 -20.99 4.67 -426.39 -1.99 -22.98 16 14 C 0.59 21.14 7.20 86.59 0.62 21.76 16 15 O -0.55 -23.08 13.16 -4.14 -0.05 -23.13 16 16 C -0.06 -2.11 6.96 40.79 0.28 -1.82 16 17 C -0.17 -5.31 10.85 22.66 0.25 -5.07 16 18 C 0.00 -0.12 12.03 85.19 1.02 0.91 16 19 N -0.28 -7.53 10.78 -57.14 -0.62 -8.15 16 20 N -0.26 -7.16 3.54 -311.82 -1.10 -8.27 16 21 C 0.09 1.80 3.32 45.52 0.15 1.95 16 22 C -0.12 -1.65 7.56 31.18 0.24 -1.42 16 23 C -0.12 -1.58 8.09 31.18 0.25 -1.32 16 24 C -0.16 -3.67 7.43 31.12 0.23 -3.44 16 25 C -0.19 -4.61 4.85 -10.79 -0.05 -4.66 16 26 C -0.16 -2.84 9.65 30.62 0.30 -2.55 16 27 C -0.16 -2.37 9.75 30.62 0.30 -2.08 16 28 H 0.08 1.62 6.96 -2.39 -0.02 1.60 16 29 H 0.05 1.73 6.29 -2.39 -0.02 1.71 16 30 H 0.08 1.89 6.74 -2.38 -0.02 1.87 16 31 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.02 1.20 6.06 -2.39 -0.01 1.19 16 33 H 0.37 16.46 4.48 -92.71 -0.41 16.05 16 34 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 35 H 0.40 9.81 3.37 -92.71 -0.31 9.50 16 36 H 0.16 4.75 8.06 -2.91 -0.02 4.73 16 37 H 0.22 3.69 8.06 -2.92 -0.02 3.67 16 38 H 0.14 2.28 6.22 -2.39 -0.01 2.26 16 39 H 0.09 1.65 7.44 -2.39 -0.02 1.64 16 40 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.80 6.92 -2.38 -0.02 1.78 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.09 2.77 7.08 -2.39 -0.02 2.75 16 46 H 0.11 1.82 5.89 -2.39 -0.01 1.81 16 47 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 48 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.11 1.36 7.29 -2.39 -0.02 1.34 16 Total: -1.00 -81.55 379.02 2.76 -78.79 By element: Atomic # 1 Polarization: 43.95 SS G_CDS: 0.11 Total: 44.06 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 5.87 Total: -5.14 kcal Atomic # 7 Polarization: -137.36 SS G_CDS: -5.07 Total: -142.44 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.90 Total: 47.86 kcal Total: -81.55 2.76 -78.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698643984.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.872 kcal (2) G-P(sol) polarization free energy of solvation -81.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.58 seconds