Wall clock time and date at job start Tue Mar 31 2020 19:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47427 * 2 1 4 4 N 1.46502 * 109.47165 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99698 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00209 * 0.02562 * 5 4 3 7 7 C 1.38812 * 119.99679 * 179.97438 * 5 4 3 8 8 N 1.31619 * 120.00401 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99772 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47214 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46791 * 120.00610 * 9 7 5 12 12 H 1.48494 * 109.47114 * 240.00207 * 9 7 5 13 13 N 1.46499 * 109.47339 * 120.00414 * 2 1 3 14 14 C 1.34774 * 119.99940 * 298.23621 * 13 2 1 15 15 O 1.21287 * 120.00170 * 5.12760 * 14 13 2 16 16 C 1.50701 * 119.99983 * 185.12028 * 14 13 2 17 17 H 1.08997 * 109.50937 * 59.90890 * 16 14 13 18 18 C 1.53151 * 109.50867 * 180.02562 * 16 14 13 19 19 C 1.53258 * 109.50537 * 189.41160 * 18 16 14 20 20 N 1.46480 * 108.79981 * 309.65701 * 19 18 16 21 21 C 1.36316 * 127.77536 * 197.08121 * 20 19 18 22 22 C 1.34856 * 106.68540 * 179.97438 * 21 20 19 23 23 N 1.34290 * 108.07505 * 0.02562 * 22 21 20 24 24 C 1.30092 * 109.21035 * 0.02562 * 23 22 21 25 25 C 1.51039 * 127.38890 * 179.86831 * 24 23 22 26 26 C 1.53001 * 109.46914 * 240.00029 * 2 1 3 27 27 C 1.52999 * 117.49963 * 12.08879 * 26 2 1 28 28 C 1.53002 * 117.50162 * 303.42868 * 26 2 1 29 29 H 1.09004 * 109.47441 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46547 * 299.99540 * 1 2 3 31 31 H 1.08999 * 109.47214 * 59.99578 * 1 2 3 32 32 H 1.08999 * 109.47268 * 300.00389 * 3 2 1 33 33 H 1.09004 * 109.46707 * 60.00177 * 3 2 1 34 34 H 0.96998 * 119.99795 * 0.02562 * 4 3 2 35 35 H 0.96997 * 120.00140 * 179.97438 * 8 7 5 36 36 H 0.97005 * 120.00269 * 118.23769 * 13 2 1 37 37 H 1.09002 * 109.47110 * 309.42345 * 18 16 14 38 38 H 1.08999 * 109.46796 * 69.40142 * 18 16 14 39 39 H 1.08997 * 109.58132 * 69.45171 * 19 18 16 40 40 H 1.08999 * 109.58828 * 189.86665 * 19 18 16 41 41 H 1.07992 * 126.65527 * 359.93853 * 21 20 19 42 42 H 1.07997 * 125.96381 * 180.02562 * 22 21 20 43 43 H 1.09003 * 109.71983 * 76.40095 * 25 24 23 44 44 H 1.09006 * 109.72055 * 315.75201 * 25 24 23 45 45 H 1.09002 * 115.55037 * 157.75861 * 26 2 1 46 46 H 1.09003 * 117.49830 * 0.02562 * 27 26 2 47 47 H 1.09003 * 117.50082 * 145.01604 * 27 26 2 48 48 H 1.08996 * 117.50209 * 214.97581 * 28 26 2 49 49 H 1.08998 * 117.49464 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1897 2.6283 -0.0013 6 1 3.6498 3.5636 -0.0009 7 6 5.5779 2.6282 -0.0013 8 7 6.2360 1.4884 -0.0012 9 14 6.5119 4.2460 -0.0015 10 1 5.5470 5.3747 -0.0009 11 1 7.3658 4.3246 1.2110 12 1 7.3655 4.3246 -1.2140 13 7 2.0184 -0.6907 1.1961 14 6 1.7224 -0.2099 2.4199 15 8 0.9759 0.7391 2.5344 16 6 2.3189 -0.8517 3.6461 17 1 3.4061 -0.7932 3.5952 18 6 1.8248 -0.1204 4.8977 19 6 2.6057 -0.6141 6.1205 20 7 2.5790 -2.0786 6.1378 21 6 2.8591 -2.9066 7.1839 22 6 2.7027 -4.1676 6.7322 23 7 2.3366 -4.1055 5.4417 24 6 2.2611 -2.8589 5.0776 25 6 1.8884 -2.3220 3.7159 26 6 2.0399 -0.7213 -1.2493 27 6 1.0242 -1.0293 -2.3512 28 6 1.5705 -2.1598 -1.4756 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.9900 0.6023 -0.0013 35 1 7.2060 1.4884 -0.0017 36 1 2.5548 -1.4940 1.1073 37 1 1.9793 0.9519 4.7768 38 1 0.7628 -0.3204 5.0399 39 1 3.6375 -0.2682 6.0592 40 1 2.1428 -0.2297 7.0294 41 1 3.1504 -2.6102 8.1806 42 1 2.8466 -5.0699 7.3079 43 1 0.8102 -2.3957 3.5740 44 1 2.4017 -2.8932 2.9423 45 1 3.0548 -0.4688 -1.5565 46 1 -0.0072 -0.7177 -2.1864 47 1 1.3710 -0.9798 -3.3835 48 1 2.2764 -2.8536 -1.9322 49 1 0.8987 -2.5925 -0.7343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715110909.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:03 Heat of formation + Delta-G solvation = 63.390059 kcal Electronic energy + Delta-G solvation = -29798.913990 eV Core-core repulsion = 25956.072291 eV Total energy + Delta-G solvation = -3842.841700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.39514 -40.24181 -38.15884 -36.14749 -34.65279 -33.70572 -33.24046 -31.17403 -29.91534 -29.75245 -28.50339 -25.88416 -24.85840 -23.88045 -22.77340 -22.29443 -22.05840 -21.50782 -19.94760 -19.07772 -18.81708 -17.23446 -17.18161 -17.11062 -15.94692 -15.71998 -15.29234 -15.12300 -14.57193 -14.46515 -14.19339 -13.94750 -13.89913 -13.78388 -13.62720 -13.18518 -12.92587 -12.62408 -12.34696 -12.13365 -12.05581 -11.91645 -11.89786 -11.38985 -11.33030 -11.21617 -11.03402 -10.84901 -10.80962 -10.76038 -10.17528 -10.07462 -10.03643 -9.81865 -9.68949 -9.65707 -9.31150 -8.81552 -8.60602 -8.42560 -6.86510 -5.76308 -3.02542 1.97059 2.67707 2.90286 3.07548 3.29105 3.42389 3.49070 3.50762 4.04312 4.18303 4.37580 4.48179 4.52263 4.60195 4.79871 4.87492 4.99910 5.01882 5.09662 5.09733 5.19174 5.29514 5.34064 5.40413 5.46573 5.48451 5.53845 5.59832 5.69859 5.74399 5.80699 5.83553 5.98172 5.99748 6.06147 6.21539 6.22995 6.25096 6.27160 6.45093 6.55563 6.68671 6.69924 6.87896 7.06786 7.09322 7.72747 7.87578 8.03796 8.43287 8.55561 9.54956 10.13106 10.49088 11.46787 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.009551 B = 0.004027 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.976542 B = 6951.853233 C = 8709.039679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.202 3.798 3 C 0.144 3.856 4 N -0.726 5.726 5 C -0.230 4.230 6 H 0.069 0.931 7 C -0.015 4.015 8 N -0.936 5.936 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 N -0.707 5.707 14 C 0.534 3.466 15 O -0.533 6.533 16 C -0.114 4.114 17 H 0.108 0.892 18 C -0.113 4.113 19 C 0.102 3.898 20 N -0.454 5.454 21 C -0.057 4.057 22 C -0.034 4.034 23 N -0.490 5.490 24 C 0.212 3.788 25 C -0.023 4.023 26 C -0.150 4.150 27 C -0.173 4.173 28 C -0.183 4.183 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.024 0.976 33 H 0.045 0.955 34 H 0.382 0.618 35 H 0.253 0.747 36 H 0.398 0.602 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.173 0.827 42 H 0.168 0.832 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.122 0.878 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.092 0.908 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.526 -9.733 8.722 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.117 3.883 3 C 0.016 3.984 4 N -0.371 5.371 5 C -0.361 4.361 6 H 0.087 0.913 7 C -0.211 4.211 8 N -0.585 5.585 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.357 5.357 14 C 0.319 3.681 15 O -0.410 6.410 16 C -0.136 4.136 17 H 0.126 0.874 18 C -0.151 4.151 19 C -0.020 4.020 20 N -0.137 5.137 21 C -0.190 4.190 22 C -0.182 4.182 23 N -0.209 5.209 24 C -0.050 4.050 25 C -0.062 4.062 26 C -0.169 4.169 27 C -0.210 4.210 28 C -0.220 4.220 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.216 0.784 35 H 0.063 0.937 36 H 0.232 0.768 37 H 0.122 0.878 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.190 0.810 42 H 0.186 0.814 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.140 0.860 46 H 0.117 0.883 47 H 0.111 0.889 48 H 0.111 0.889 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.179 -9.343 8.315 16.775 hybrid contribution 1.524 0.891 0.609 1.867 sum -9.655 -8.452 8.923 15.630 Atomic orbital electron populations 1.22291 0.94761 1.01604 1.03461 1.20035 0.93041 0.93118 0.82145 1.21052 0.86426 0.91687 0.99257 1.42258 0.99193 1.06188 1.89426 1.19279 0.89001 0.86245 1.41589 0.91335 1.24668 0.96295 0.96633 1.03484 1.69653 1.06588 1.23721 1.58570 0.86160 0.79935 0.83306 0.77107 1.20622 1.22047 1.21973 1.45923 1.54769 1.29915 1.05069 1.19923 0.80715 0.83440 0.83987 1.90635 1.36204 1.27738 1.86427 1.21452 1.03150 0.94703 0.94310 0.87393 1.21696 1.00302 1.02279 0.90813 1.22107 1.02789 0.76336 1.00811 1.45474 1.50386 1.07660 1.10138 1.22565 1.11055 0.91036 0.94345 1.22342 1.07174 0.96515 0.92191 1.70048 1.19918 1.17842 1.13090 1.23126 1.04265 0.86015 0.91611 1.20118 1.02736 0.93242 0.90081 1.22575 1.00779 0.96909 0.96625 1.23056 0.99169 1.02894 0.95913 1.22956 1.04001 0.91546 1.03479 0.92945 0.90271 0.91720 0.95861 0.93713 0.78386 0.93750 0.76803 0.87767 0.90193 0.89232 0.88854 0.80958 0.81438 0.88921 0.88181 0.86021 0.88276 0.88941 0.88913 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 7.06 37.16 0.26 -2.00 16 2 C 0.20 3.16 0.54 -131.82 -0.07 3.09 16 3 C 0.14 2.95 4.94 -4.04 -0.02 2.93 16 4 N -0.73 -17.74 5.03 -59.91 -0.30 -18.04 16 5 C -0.23 -6.38 9.99 -15.06 -0.15 -6.53 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 8 N -0.94 -27.58 13.06 55.49 0.72 -26.86 16 9 Si 0.90 22.40 29.55 -169.99 -5.02 17.37 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 N -0.71 -10.20 4.66 -47.61 -0.22 -10.43 16 14 C 0.53 8.04 6.54 -10.99 -0.07 7.97 16 15 O -0.53 -9.53 12.07 5.55 0.07 -9.46 16 16 C -0.11 -1.40 2.55 -91.51 -0.23 -1.63 16 17 H 0.11 1.41 8.12 -51.93 -0.42 0.99 16 18 C -0.11 -1.24 4.67 -26.52 -0.12 -1.36 16 19 C 0.10 0.95 6.98 -3.92 -0.03 0.92 16 20 N -0.45 -5.16 3.13 -113.76 -0.36 -5.52 16 21 C -0.06 -0.59 11.65 -16.76 -0.20 -0.79 16 22 C -0.03 -0.41 11.87 -17.68 -0.21 -0.62 16 23 N -0.49 -7.05 11.24 -10.62 -0.12 -7.17 16 24 C 0.21 2.76 7.65 -155.24 -1.19 1.57 16 25 C -0.02 -0.25 5.44 -27.53 -0.15 -0.40 16 26 C -0.15 -2.20 4.86 -90.62 -0.44 -2.64 16 27 C -0.17 -2.11 9.63 -26.69 -0.26 -2.37 16 28 C -0.18 -2.11 9.72 -26.69 -0.26 -2.37 16 29 H 0.05 0.64 7.00 -51.93 -0.36 0.27 16 30 H 0.08 1.23 6.13 -51.93 -0.32 0.92 16 31 H 0.06 0.84 6.81 -51.93 -0.35 0.49 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.05 1.02 6.22 -51.93 -0.32 0.69 16 34 H 0.38 9.59 6.63 -40.82 -0.27 9.32 16 35 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.40 5.09 7.96 -40.82 -0.32 4.76 16 37 H 0.10 1.25 7.79 -51.93 -0.40 0.84 16 38 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 42 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.09 0.99 8.11 -51.93 -0.42 0.57 16 44 H 0.10 1.03 7.85 -51.93 -0.41 0.63 16 45 H 0.12 2.17 7.08 -51.93 -0.37 1.81 16 46 H 0.10 1.12 5.88 -51.93 -0.31 0.82 16 47 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.09 0.98 7.39 -51.93 -0.38 0.60 16 LS Contribution 383.70 15.07 5.78 5.78 Total: -1.00 -33.57 383.70 -10.27 -43.84 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -7.59 Total: 15.24 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -3.23 Total: -4.76 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -0.27 Total: -68.01 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.07 Total: -9.46 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.57 -10.27 -43.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715110909.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.230 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds