Wall clock time and date at job start Tue Mar 31 2020 19:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47427 * 2 1 4 4 N 1.46502 * 109.47165 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99698 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00209 * 0.02562 * 5 4 3 7 7 C 1.38812 * 119.99679 * 179.97438 * 5 4 3 8 8 N 1.31619 * 120.00401 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99772 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47214 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46791 * 120.00610 * 9 7 5 12 12 H 1.48494 * 109.47114 * 240.00207 * 9 7 5 13 13 N 1.46499 * 109.47339 * 120.00414 * 2 1 3 14 14 C 1.34774 * 119.99940 * 298.23621 * 13 2 1 15 15 O 1.21287 * 120.00170 * 5.12760 * 14 13 2 16 16 C 1.50701 * 119.99983 * 185.12028 * 14 13 2 17 17 H 1.08997 * 109.50937 * 59.90890 * 16 14 13 18 18 C 1.53151 * 109.50867 * 180.02562 * 16 14 13 19 19 C 1.53258 * 109.50537 * 189.41160 * 18 16 14 20 20 N 1.46480 * 108.79981 * 309.65701 * 19 18 16 21 21 C 1.36316 * 127.77536 * 197.08121 * 20 19 18 22 22 C 1.34856 * 106.68540 * 179.97438 * 21 20 19 23 23 N 1.34290 * 108.07505 * 0.02562 * 22 21 20 24 24 C 1.30092 * 109.21035 * 0.02562 * 23 22 21 25 25 C 1.51039 * 127.38890 * 179.86831 * 24 23 22 26 26 C 1.53001 * 109.46914 * 240.00029 * 2 1 3 27 27 C 1.52999 * 117.49963 * 12.08879 * 26 2 1 28 28 C 1.53002 * 117.50162 * 303.42868 * 26 2 1 29 29 H 1.09004 * 109.47441 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46547 * 299.99540 * 1 2 3 31 31 H 1.08999 * 109.47214 * 59.99578 * 1 2 3 32 32 H 1.08999 * 109.47268 * 300.00389 * 3 2 1 33 33 H 1.09004 * 109.46707 * 60.00177 * 3 2 1 34 34 H 0.96998 * 119.99795 * 0.02562 * 4 3 2 35 35 H 0.96997 * 120.00140 * 179.97438 * 8 7 5 36 36 H 0.97005 * 120.00269 * 118.23769 * 13 2 1 37 37 H 1.09002 * 109.47110 * 309.42345 * 18 16 14 38 38 H 1.08999 * 109.46796 * 69.40142 * 18 16 14 39 39 H 1.08997 * 109.58132 * 69.45171 * 19 18 16 40 40 H 1.08999 * 109.58828 * 189.86665 * 19 18 16 41 41 H 1.07992 * 126.65527 * 359.93853 * 21 20 19 42 42 H 1.07997 * 125.96381 * 180.02562 * 22 21 20 43 43 H 1.09003 * 109.71983 * 76.40095 * 25 24 23 44 44 H 1.09006 * 109.72055 * 315.75201 * 25 24 23 45 45 H 1.09002 * 115.55037 * 157.75861 * 26 2 1 46 46 H 1.09003 * 117.49830 * 0.02562 * 27 26 2 47 47 H 1.09003 * 117.50082 * 145.01604 * 27 26 2 48 48 H 1.08996 * 117.50209 * 214.97581 * 28 26 2 49 49 H 1.08998 * 117.49464 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1897 2.6283 -0.0013 6 1 3.6498 3.5636 -0.0009 7 6 5.5779 2.6282 -0.0013 8 7 6.2360 1.4884 -0.0012 9 14 6.5119 4.2460 -0.0015 10 1 5.5470 5.3747 -0.0009 11 1 7.3658 4.3246 1.2110 12 1 7.3655 4.3246 -1.2140 13 7 2.0184 -0.6907 1.1961 14 6 1.7224 -0.2099 2.4199 15 8 0.9759 0.7391 2.5344 16 6 2.3189 -0.8517 3.6461 17 1 3.4061 -0.7932 3.5952 18 6 1.8248 -0.1204 4.8977 19 6 2.6057 -0.6141 6.1205 20 7 2.5790 -2.0786 6.1378 21 6 2.8591 -2.9066 7.1839 22 6 2.7027 -4.1676 6.7322 23 7 2.3366 -4.1055 5.4417 24 6 2.2611 -2.8589 5.0776 25 6 1.8884 -2.3220 3.7159 26 6 2.0399 -0.7213 -1.2493 27 6 1.0242 -1.0293 -2.3512 28 6 1.5705 -2.1598 -1.4756 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.9900 0.6023 -0.0013 35 1 7.2060 1.4884 -0.0017 36 1 2.5548 -1.4940 1.1073 37 1 1.9793 0.9519 4.7768 38 1 0.7628 -0.3204 5.0399 39 1 3.6375 -0.2682 6.0592 40 1 2.1428 -0.2297 7.0294 41 1 3.1504 -2.6102 8.1806 42 1 2.8466 -5.0699 7.3079 43 1 0.8102 -2.3957 3.5740 44 1 2.4017 -2.8932 2.9423 45 1 3.0548 -0.4688 -1.5565 46 1 -0.0072 -0.7177 -2.1864 47 1 1.3710 -0.9798 -3.3835 48 1 2.2764 -2.8536 -1.9322 49 1 0.8987 -2.5925 -0.7343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715110909.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:02 Heat of formation + Delta-G solvation = 42.598335 kcal Electronic energy + Delta-G solvation = -29799.815587 eV Core-core repulsion = 25956.072291 eV Total energy + Delta-G solvation = -3843.743297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.27119 -41.46380 -39.30272 -37.13326 -36.32835 -35.03656 -34.35523 -32.93169 -31.23175 -30.76238 -29.43965 -27.55920 -25.85636 -25.16758 -24.23718 -23.61784 -23.09001 -22.36150 -21.05292 -20.12573 -20.00132 -19.21024 -18.34843 -17.96788 -16.98166 -16.84560 -16.71478 -16.32584 -16.12644 -15.66933 -15.26370 -15.14576 -15.06410 -14.81740 -14.71839 -14.63739 -14.19162 -13.82539 -13.68002 -13.58900 -13.19068 -13.10265 -12.90221 -12.83280 -12.79682 -12.40362 -12.29661 -12.16544 -12.16081 -12.01635 -11.96052 -11.74785 -11.21793 -11.05928 -10.96200 -10.89897 -10.54039 -10.46385 -9.89884 -9.27825 -8.93384 -7.94905 -5.20689 1.12196 1.44402 1.45241 1.54990 1.69636 1.86409 2.15159 2.18512 2.55152 3.02252 3.24298 3.38447 3.51676 3.54995 3.61687 3.67147 3.90782 3.98336 4.06818 4.12408 4.15801 4.20406 4.25447 4.26642 4.47072 4.50204 4.56754 4.61188 4.65861 4.71991 4.81457 4.85914 4.90484 4.91233 4.95637 5.02557 5.05420 5.07123 5.15828 5.32314 5.34846 5.38204 5.46893 5.50931 5.72431 5.87298 6.21528 6.27665 6.69311 7.15101 7.35115 7.36407 8.10688 8.38814 9.28064 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.009551 B = 0.004027 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.976542 B = 6951.853233 C = 8709.039679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.211 3.789 3 C 0.146 3.854 4 N -0.729 5.729 5 C -0.240 4.240 6 H 0.064 0.936 7 C -0.067 4.067 8 N -0.963 5.963 9 Si 0.965 3.035 10 H -0.273 1.273 11 H -0.293 1.293 12 H -0.292 1.292 13 N -0.702 5.702 14 C 0.529 3.471 15 O -0.563 6.563 16 C -0.104 4.104 17 H 0.098 0.902 18 C -0.109 4.109 19 C 0.105 3.895 20 N -0.456 5.456 21 C -0.046 4.046 22 C -0.059 4.059 23 N -0.524 5.524 24 C 0.191 3.809 25 C -0.013 4.013 26 C -0.175 4.175 27 C -0.164 4.164 28 C -0.157 4.157 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.016 0.984 33 H 0.023 0.977 34 H 0.377 0.623 35 H 0.250 0.750 36 H 0.406 0.594 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.209 0.791 42 H 0.187 0.813 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.113 0.887 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.202 -10.431 9.463 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.125 3.875 3 C 0.018 3.982 4 N -0.372 5.372 5 C -0.372 4.372 6 H 0.082 0.918 7 C -0.260 4.260 8 N -0.614 5.614 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.220 1.220 12 H -0.219 1.219 13 N -0.353 5.353 14 C 0.315 3.685 15 O -0.442 6.442 16 C -0.126 4.126 17 H 0.116 0.884 18 C -0.147 4.147 19 C -0.016 4.016 20 N -0.139 5.139 21 C -0.180 4.180 22 C -0.206 4.206 23 N -0.243 5.243 24 C -0.071 4.071 25 C -0.052 4.052 26 C -0.194 4.194 27 C -0.201 4.201 28 C -0.194 4.194 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.034 0.966 33 H 0.041 0.959 34 H 0.211 0.789 35 H 0.059 0.941 36 H 0.242 0.758 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.140 0.860 41 H 0.226 0.774 42 H 0.204 0.796 43 H 0.116 0.884 44 H 0.125 0.875 45 H 0.103 0.897 46 H 0.131 0.869 47 H 0.115 0.885 48 H 0.120 0.880 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.874 -10.047 9.050 17.995 hybrid contribution 1.717 1.125 0.379 2.087 sum -10.157 -8.922 9.429 16.483 Atomic orbital electron populations 1.22203 0.92881 1.03019 1.03024 1.19828 0.94183 0.90292 0.83192 1.21085 0.84233 0.95252 0.97598 1.42315 1.00747 1.05043 1.89069 1.19567 0.89596 0.87192 1.40867 0.91849 1.25370 0.97051 0.99645 1.03915 1.69786 1.06482 1.25438 1.59715 0.85196 0.78542 0.80034 0.76755 1.19731 1.21988 1.21935 1.45926 1.54594 1.29980 1.04760 1.20420 0.80208 0.83045 0.84781 1.90621 1.37622 1.29063 1.86922 1.21356 1.02162 0.95546 0.93559 0.88387 1.21625 1.00603 1.01353 0.91080 1.22195 1.03048 0.75341 1.01018 1.45644 1.49919 1.08318 1.10041 1.23150 1.09150 0.90389 0.95278 1.22815 1.07890 0.98146 0.91798 1.69990 1.20955 1.18785 1.14598 1.23287 1.05254 0.86194 0.92401 1.20044 1.03041 0.92138 0.89969 1.22265 0.99752 1.00006 0.97365 1.23180 0.99016 1.02410 0.95518 1.23037 1.03414 0.89980 1.02933 0.90490 0.92084 0.90791 0.96589 0.95928 0.78939 0.94095 0.75812 0.89042 0.90191 0.88753 0.86019 0.77448 0.79589 0.88416 0.87549 0.89704 0.86898 0.88506 0.88004 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 7.06 71.98 0.51 -3.55 16 2 C 0.21 6.59 0.54 3.60 0.00 6.59 16 3 C 0.15 6.16 4.94 86.38 0.43 6.58 16 4 N -0.73 -36.68 5.03 -343.44 -1.73 -38.40 16 5 C -0.24 -13.61 9.99 84.03 0.84 -12.77 16 6 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 7 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 8 N -0.96 -57.64 13.06 21.65 0.28 -57.35 16 9 Si 0.96 46.44 29.55 68.60 2.03 48.47 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 12 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 13 N -0.70 -20.30 4.66 -422.92 -1.97 -22.27 16 14 C 0.53 16.11 6.54 87.66 0.57 16.68 16 15 O -0.56 -20.58 12.07 -3.05 -0.04 -20.61 16 16 C -0.10 -2.55 2.55 -11.37 -0.03 -2.58 16 17 H 0.10 2.61 8.12 -2.39 -0.02 2.59 16 18 C -0.11 -2.34 4.67 30.73 0.14 -2.19 16 19 C 0.11 1.78 6.98 86.47 0.60 2.38 16 20 N -0.46 -9.61 3.13 -513.82 -1.61 -11.22 16 21 C -0.05 -0.86 11.65 83.22 0.97 0.11 16 22 C -0.06 -1.33 11.87 83.54 0.99 -0.34 16 23 N -0.52 -14.67 11.24 -187.51 -2.11 -16.78 16 24 C 0.19 4.80 7.65 138.23 1.06 5.85 16 25 C -0.01 -0.28 5.44 30.08 0.16 -0.12 16 26 C -0.17 -5.04 4.86 -10.79 -0.05 -5.09 16 27 C -0.16 -3.67 9.63 30.62 0.29 -3.37 16 28 C -0.16 -3.26 9.72 30.62 0.30 -2.96 16 29 H 0.08 1.67 7.00 -2.39 -0.02 1.65 16 30 H 0.06 1.88 6.13 -2.39 -0.01 1.86 16 31 H 0.07 1.81 6.81 -2.39 -0.02 1.79 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.02 1.07 6.22 -2.39 -0.01 1.05 16 34 H 0.38 19.58 6.63 -92.71 -0.61 18.97 16 35 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 36 H 0.41 10.29 7.96 -92.70 -0.74 9.55 16 37 H 0.09 2.22 7.79 -2.39 -0.02 2.20 16 38 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.12 1.39 8.14 -2.39 -0.02 1.38 16 41 H 0.21 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.19 3.15 8.06 -2.91 -0.02 3.12 16 43 H 0.10 2.02 8.11 -2.39 -0.02 2.00 16 44 H 0.11 2.14 7.85 -2.38 -0.02 2.12 16 45 H 0.08 3.12 7.08 -2.39 -0.02 3.11 16 46 H 0.11 2.22 5.88 -2.39 -0.01 2.21 16 47 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.11 1.94 7.39 -2.39 -0.02 1.93 16 Total: -1.00 -73.61 383.70 1.74 -71.87 By element: Atomic # 1 Polarization: 44.83 SS G_CDS: -0.38 Total: 44.45 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 7.26 Total: 1.85 kcal Atomic # 7 Polarization: -138.90 SS G_CDS: -7.13 Total: -146.03 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.04 Total: -20.61 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -73.61 1.74 -71.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715110909.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.468 kcal (2) G-P(sol) polarization free energy of solvation -73.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds